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The map label for this gene is rfbD [H]

Identifier: 13476285

GI number: 13476285

Start: 6249917

End: 6250708

Strand: Reverse

Name: rfbD [H]

Synonym: mll7565

Alternate gene names: 13476285

Gene position: 6250708-6249917 (Counterclockwise)

Preceding gene: 13476287

Following gene: 13476284

Centisome position: 88.84

GC content: 54.55

Gene sequence:

>792_bases
ATGATTGCGGCACTAAACGGCGCTTTTGACGACATCTCAAAAGCCATGAGATTACACCGGGTCTGGATCGCGCTTGCCCA
TGAGGACATCGGCGACCAGCACAGACGCACGACGCTCGGCCCGCTTTGGATGCTGGTCAACTATTTCGCTTTCGTCGGCA
CATTTGCCTTTGTTTTCGTGACCAAGGACGCAAGCAACCCAAGCTATATAGCCTATGTGGCCATCGGCATGCTGGTGTGG
TTCTACCTCACCGAGACCATCACCATGAGCGTGTCTCTCTTCCAGCGCGAAGCGAGCTTCATTCAAGGCACGACGCTGCC
GTTGTTCGTATATGTGATGCGATTGACGATGCAATGCATCATTCGGGCTGGTTATTCGCTAGCGGGTTGCGTTCTTATTT
TGCTTTTGAGCGGTTACGGAATCAACACAAACTGGCTGCTGTCCGCGCTGGGCTTGTTGCTCCTGATCCTGGCAACCCCT
GCATTTGTGGTGGTTTTTGCGTTCCTGGGCGCATTCTTTCCCGACAGCGAATTCATCGTTGGCAACCTGATGCGGGTGGG
CATGTTCTTCACGCCGGTCTTCTGGGTCTATAGCGGGCAAGAGGGCATTCAAGCATACGCCTATCATTGGAACCCGTTCA
CCTATTTCCTGGAGAGCGTGCGAGACCCGATCACAACGGGCATATTTCCGGGGCATGCTTTGGCGGTGACAGGCTATTTC
TGCCTCGGCCTCTGGGCACTTGCGCTGCTGCTGCTGGGCCTTTATCGCAAGCGCATCGTTTTCCTGATCTGA

Upstream 100 bases:

>100_bases
CCATATGCCTGTCGAAATGGCTATTAGAGATGGGTTTGGTGGTTCGCCATGGCCAGCGAAAGACAATGCGCCAGAACAAC
GGATTGCGATACTCCCAACT

Downstream 100 bases:

>100_bases
GTTCCATGACCTCCATCACACTGAACAATGTCAGCCTGGTCTATCGCCTGTTTGAAAAGTTGACGCTTTCGGCGCCCGGC
CGGCGTCGGAGCGCTCTCGG

Product: ABC transporter permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 263; Mature: 263

Protein sequence:

>263_residues
MIAALNGAFDDISKAMRLHRVWIALAHEDIGDQHRRTTLGPLWMLVNYFAFVGTFAFVFVTKDASNPSYIAYVAIGMLVW
FYLTETITMSVSLFQREASFIQGTTLPLFVYVMRLTMQCIIRAGYSLAGCVLILLLSGYGINTNWLLSALGLLLLILATP
AFVVVFAFLGAFFPDSEFIVGNLMRVGMFFTPVFWVYSGQEGIQAYAYHWNPFTYFLESVRDPITTGIFPGHALAVTGYF
CLGLWALALLLLGLYRKRIVFLI

Sequences:

>Translated_263_residues
MIAALNGAFDDISKAMRLHRVWIALAHEDIGDQHRRTTLGPLWMLVNYFAFVGTFAFVFVTKDASNPSYIAYVAIGMLVW
FYLTETITMSVSLFQREASFIQGTTLPLFVYVMRLTMQCIIRAGYSLAGCVLILLLSGYGINTNWLLSALGLLLLILATP
AFVVVFAFLGAFFPDSEFIVGNLMRVGMFFTPVFWVYSGQEGIQAYAYHWNPFTYFLESVRDPITTGIFPGHALAVTGYF
CLGLWALALLLLGLYRKRIVFLI
>Mature_263_residues
MIAALNGAFDDISKAMRLHRVWIALAHEDIGDQHRRTTLGPLWMLVNYFAFVGTFAFVFVTKDASNPSYIAYVAIGMLVW
FYLTETITMSVSLFQREASFIQGTTLPLFVYVMRLTMQCIIRAGYSLAGCVLILLLSGYGINTNWLLSALGLLLLILATP
AFVVVFAFLGAFFPDSEFIVGNLMRVGMFFTPVFWVYSGQEGIQAYAYHWNPFTYFLESVRDPITTGIFPGHALAVTGYF
CLGLWALALLLLGLYRKRIVFLI

Specific function: May form an ATP-driven O-antigen export apparatus, in association with rfbE [H]

COG id: COG1682

COG function: function code GM; ABC-type polysaccharide/polyol phosphate export systems, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 29546; Mature: 29546

Theoretical pI: Translated: 8.05; Mature: 8.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIAALNGAFDDISKAMRLHRVWIALAHEDIGDQHRRTTLGPLWMLVNYFAFVGTFAFVFV
CCEECCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEE
TKDASNPSYIAYVAIGMLVWFYLTETITMSVSLFQREASFIQGTTLPLFVYVMRLTMQCI
EECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
IRAGYSLAGCVLILLLSGYGINTNWLLSALGLLLLILATPAFVVVFAFLGAFFPDSEFIV
HHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
GNLMRVGMFFTPVFWVYSGQEGIQAYAYHWNPFTYFLESVRDPITTGIFPGHALAVTGYF
HHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHCHHHHCCCCCHHHHHHHHH
CLGLWALALLLLGLYRKRIVFLI
HHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MIAALNGAFDDISKAMRLHRVWIALAHEDIGDQHRRTTLGPLWMLVNYFAFVGTFAFVFV
CCEECCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEE
TKDASNPSYIAYVAIGMLVWFYLTETITMSVSLFQREASFIQGTTLPLFVYVMRLTMQCI
EECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
IRAGYSLAGCVLILLLSGYGINTNWLLSALGLLLLILATPAFVVVFAFLGAFFPDSEFIV
HHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
GNLMRVGMFFTPVFWVYSGQEGIQAYAYHWNPFTYFLESVRDPITTGIFPGHALAVTGYF
HHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHCHHHHCCCCCHHHHHHHHH
CLGLWALALLLLGLYRKRIVFLI
HHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7692217 [H]