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The map label for this gene is rfbE [H]

Identifier: 13476284

GI number: 13476284

Start: 6249210

End: 6249911

Strand: Reverse

Name: rfbE [H]

Synonym: mll7564

Alternate gene names: 13476284

Gene position: 6249911-6249210 (Counterclockwise)

Preceding gene: 13476285

Following gene: 13476283

Centisome position: 88.83

GC content: 58.83

Gene sequence:

>702_bases
ATGACCTCCATCACACTGAACAATGTCAGCCTGGTCTATCGCCTGTTTGAAAAGTTGACGCTTTCGGCGCCCGGCCGGCG
TCGGAGCGCTCTCGGCGGCAATATAGCCAAGTCGGGCACCAAACAGGTCGTGCAGGCGCTCGACGGTGTCAGCTTCGAGC
TCAAGGCGGGCGACCGGTTAGGGCTTGTCGGCCCGAATGGCGCCGGCAAGACCACCCTGCTCAAGGTTCTATACGGAATC
TACCAGCCATCGGGTGGCACGATATCGATCACCGGCAAGGTCGATGCCCTGTTCAACATCCACATAGGGTTTCGTCCCGA
GGCCACCGGGCGCAGGAACATCGTGCTGAGGGGGTTGATCAGCGGTTGGACGGCAGCCGAGATCGAAGAGAAGATGGAAG
AAATAATCGATTTCAGCGAACTGGGCGACTTCATCGACCTGCCGTTCAAGGCGTACAGCCAAGGCATGGCGGCACGTTTG
GCATTTGCTGCAGCGACCACTCTCGAGCCTGAAATTCTTCTGATGGATGAATGGATTGGGGCCGGCGACGCGTCGTTCCA
GGAGAAAGCCAAACGACGCATGGACGAACTGGCGGAAAAGGCCGGCATCATCGTGTTGGCCAGCCACGACGATGCGCTCA
TCCGACGCGTCTGCACGAAAAAACTCACACTTCGAGCTGGGCGGGTGGAGTCGCTGGCTTAA

Upstream 100 bases:

>100_bases
CTTTGGCGGTGACAGGCTATTTCTGCCTCGGCCTCTGGGCACTTGCGCTGCTGCTGCTGGGCCTTTATCGCAAGCGCATC
GTTTTCCTGATCTGAGTTCC

Downstream 100 bases:

>100_bases
AGCGTTTCGCGATATCGAGGTCGAGCCAGGGCTCGATAGATCGTAGCATCATCCTCTTCCGCACGCCCTCAACGGTCCAA
ACCCACTCTCGAGGTCAAGG

Product: ABC transporter ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 233; Mature: 232

Protein sequence:

>233_residues
MTSITLNNVSLVYRLFEKLTLSAPGRRRSALGGNIAKSGTKQVVQALDGVSFELKAGDRLGLVGPNGAGKTTLLKVLYGI
YQPSGGTISITGKVDALFNIHIGFRPEATGRRNIVLRGLISGWTAAEIEEKMEEIIDFSELGDFIDLPFKAYSQGMAARL
AFAAATTLEPEILLMDEWIGAGDASFQEKAKRRMDELAEKAGIIVLASHDDALIRRVCTKKLTLRAGRVESLA

Sequences:

>Translated_233_residues
MTSITLNNVSLVYRLFEKLTLSAPGRRRSALGGNIAKSGTKQVVQALDGVSFELKAGDRLGLVGPNGAGKTTLLKVLYGI
YQPSGGTISITGKVDALFNIHIGFRPEATGRRNIVLRGLISGWTAAEIEEKMEEIIDFSELGDFIDLPFKAYSQGMAARL
AFAAATTLEPEILLMDEWIGAGDASFQEKAKRRMDELAEKAGIIVLASHDDALIRRVCTKKLTLRAGRVESLA
>Mature_232_residues
TSITLNNVSLVYRLFEKLTLSAPGRRRSALGGNIAKSGTKQVVQALDGVSFELKAGDRLGLVGPNGAGKTTLLKVLYGIY
QPSGGTISITGKVDALFNIHIGFRPEATGRRNIVLRGLISGWTAAEIEEKMEEIIDFSELGDFIDLPFKAYSQGMAARLA
FAAATTLEPEILLMDEWIGAGDASFQEKAKRRMDELAEKAGIIVLASHDDALIRRVCTKKLTLRAGRVESLA

Specific function: May form an ATP-driven O-antigen export apparatus, in association with RfbD [H]

COG id: COG1134

COG function: function code GM; ABC-type polysaccharide/polyol phosphate transport system, ATPase component

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI27881501, Length=199, Percent_Identity=26.1306532663317, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI30795238, Length=199, Percent_Identity=26.1306532663317, Blast_Score=72, Evalue=6e-13,
Organism=Homo sapiens, GI27477115, Length=153, Percent_Identity=30.0653594771242, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI6005701, Length=220, Percent_Identity=26.3636363636364, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI27436953, Length=192, Percent_Identity=22.3958333333333, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI27262624, Length=158, Percent_Identity=28.4810126582279, Blast_Score=65, Evalue=4e-11,
Organism=Homo sapiens, GI27262626, Length=158, Percent_Identity=28.4810126582279, Blast_Score=65, Evalue=4e-11,
Organism=Escherichia coli, GI1787712, Length=201, Percent_Identity=29.3532338308458, Blast_Score=84, Evalue=8e-18,
Organism=Escherichia coli, GI1788761, Length=214, Percent_Identity=28.9719626168224, Blast_Score=81, Evalue=5e-17,
Organism=Escherichia coli, GI87081791, Length=189, Percent_Identity=28.5714285714286, Blast_Score=78, Evalue=4e-16,
Organism=Escherichia coli, GI1789873, Length=202, Percent_Identity=30.1980198019802, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1788225, Length=223, Percent_Identity=27.3542600896861, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1789891, Length=213, Percent_Identity=27.6995305164319, Blast_Score=71, Evalue=5e-14,
Organism=Escherichia coli, GI1787758, Length=204, Percent_Identity=27.9411764705882, Blast_Score=71, Evalue=5e-14,
Organism=Escherichia coli, GI1788165, Length=180, Percent_Identity=30, Blast_Score=70, Evalue=8e-14,
Organism=Escherichia coli, GI1787547, Length=206, Percent_Identity=27.1844660194175, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1786398, Length=206, Percent_Identity=25.7281553398058, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI87081709, Length=196, Percent_Identity=26.530612244898, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787089, Length=204, Percent_Identity=25.9803921568627, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1786703, Length=206, Percent_Identity=28.6407766990291, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI87081782, Length=148, Percent_Identity=31.0810810810811, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI87081834, Length=215, Percent_Identity=27.906976744186, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1790525, Length=207, Percent_Identity=28.0193236714976, Blast_Score=64, Evalue=6e-12,
Organism=Escherichia coli, GI1786319, Length=177, Percent_Identity=27.683615819209, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI48994943, Length=195, Percent_Identity=25.6410256410256, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1787041, Length=183, Percent_Identity=29.5081967213115, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1787029, Length=201, Percent_Identity=23.8805970149254, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1790467, Length=208, Percent_Identity=23.5576923076923, Blast_Score=61, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI115533608, Length=213, Percent_Identity=24.8826291079812, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI193202349, Length=206, Percent_Identity=26.2135922330097, Blast_Score=66, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17510237, Length=196, Percent_Identity=26.0204081632653, Blast_Score=65, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24666092, Length=220, Percent_Identity=26.3636363636364, Blast_Score=74, Evalue=7e-14,
Organism=Drosophila melanogaster, GI116007184, Length=184, Percent_Identity=27.1739130434783, Blast_Score=67, Evalue=8e-12,
Organism=Drosophila melanogaster, GI221500365, Length=184, Percent_Identity=27.1739130434783, Blast_Score=67, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 25181; Mature: 25050

Theoretical pI: Translated: 9.41; Mature: 9.41

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSITLNNVSLVYRLFEKLTLSAPGRRRSALGGNIAKSGTKQVVQALDGVSFELKAGDRL
CCEEEECHHHHHHHHHHHHHCCCCCCCHHHCCCCHHHHHHHHHHHHHCCCEEEEECCCEE
GLVGPNGAGKTTLLKVLYGIYQPSGGTISITGKVDALFNIHIGFRPEATGRRNIVLRGLI
EEECCCCCCHHHHHHHHHHHCCCCCCEEEEEEEEEEEEEEEEECCCCCCCCCCEEEEEHH
SGWTAAEIEEKMEEIIDFSELGDFIDLPFKAYSQGMAARLAFAAATTLEPEILLMDEWIG
CCCHHHHHHHHHHHHHCHHHCCHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
AGDASFQEKAKRRMDELAEKAGIIVLASHDDALIRRVCTKKLTLRAGRVESLA
CCCCHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHCCCCHHCCC
>Mature Secondary Structure 
TSITLNNVSLVYRLFEKLTLSAPGRRRSALGGNIAKSGTKQVVQALDGVSFELKAGDRL
CEEEECHHHHHHHHHHHHHCCCCCCCHHHCCCCHHHHHHHHHHHHHCCCEEEEECCCEE
GLVGPNGAGKTTLLKVLYGIYQPSGGTISITGKVDALFNIHIGFRPEATGRRNIVLRGLI
EEECCCCCCHHHHHHHHHHHCCCCCCEEEEEEEEEEEEEEEEECCCCCCCCCCEEEEEHH
SGWTAAEIEEKMEEIIDFSELGDFIDLPFKAYSQGMAARLAFAAATTLEPEILLMDEWIG
CCCHHHHHHHHHHHHHCHHHCCHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
AGDASFQEKAKRRMDELAEKAGIIVLASHDDALIRRVCTKKLTLRAGRVESLA
CCCCHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7692217 [H]