Click here to switch to the map view.

The map label for this gene is yncB [H]

Identifier: 13475704

GI number: 13475704

Start: 5633131

End: 5634150

Strand: Direct

Name: yncB [H]

Synonym: mlr6843

Alternate gene names: 13475704

Gene position: 5633131-5634150 (Clockwise)

Preceding gene: 13475703

Following gene: 13475706

Centisome position: 80.06

GC content: 64.9

Gene sequence:

>1020_bases
ATGTCGACTGAGACGAACATTCGCATCGTGCTTGCGGCGCGACCGCAAGGCCGGCCGAAGCCGAGCGATTTCCGCATCGA
GTCCGTTGGGATCGCCGAACCGGGCGAAGGCGAACTGTTGCTGCAGATCCTCTATCTGTCGCTAGACCCCTATATGCGCG
GCCGCATGAACGCCACCAAATCCTATGCCAAGCCGGTCGAGATCGACGGCGTGATGGAGGGCGGCACCGTTGCGCGCGTC
GTCAAATCCCGCCATGCCGGCTTCGCCGAGGGCGATATCGTGCTGTCGCACTCGGGATGGCAGGGCTTCGCCCTGTCCGA
CGGTGTCGGGTTGCGCAAGCTCGATCCCGCGGCGGCACCCGTCACCACCGCACTCGGCGTGCTGGGCATGCCGGGCTTTA
CCGCCTATGCCGGCCTGCTCACAATCGGGCAGCCAAAGGCCGGCGAGACGGTGGTCGTGGCGGCGGCCAGCGGGGCGGTC
GGCTCGGCTGTCGGCCAGATCGCACGCATCAAGGGCGCGCGCGCCGTTGGCATCGCTGGCGGCGCCGACAAATGCGCCTT
CGTGCGGCGGGAGCTCGGTTTCGATGCGGTCGTCGACCACCGGGCCGACAATTTCGCCGAGCAGTTAAAGGCGGCCTGTC
CCGATGGCATCGACGTCTATTTCGAGAATGTCGGCGGTCCTGTCTGGGATGCGGTGTTTCCGCTGCTCAACGAGTTCGCG
CGTGTGCCTGTCTGCGGGCTGATCGCACAATACAACACCGTCGCGGCTTCCGCCGACGACCGGCTGCCGACGCTGATGCA
ACAAGTGCTCCACCGCAGCCTGACGATCAGGGGCTTCATCCAGCGCGAATTTGTCGACCAGCGCCCCGCCTTTTATCGTG
ACATGGCCGGGTGGATCGCGTCCGGCCAGGTCCGCTACAGGGAAGATATAGTGGATGGTCTGGAGAACGCGCCGCAGGCT
TTCATGGGCCTTCTCGAAGGCAAGAACTTCGGCAAACTCATCGTGCGGGTGGCGCAATAA

Upstream 100 bases:

>100_bases
GCATTCAGACGACAGTATAAGGGGTCGACGCCGCACGAGAATCCCGGCCTTTTAGCGCCACCGGTTCTTCGCGTGGAACG
TTGTTCGAAGGGAGCAGCCA

Downstream 100 bases:

>100_bases
CTGCGTCTCGCCACCACCCGCAATCGCGAACTGGACGGATCAGTCGGGCTGACGGTCCGCGGCCGGACGGCGCCCGTCGA
TCCACAGGGCAAGCAACGTG

Product: quinone oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 339; Mature: 338

Protein sequence:

>339_residues
MSTETNIRIVLAARPQGRPKPSDFRIESVGIAEPGEGELLLQILYLSLDPYMRGRMNATKSYAKPVEIDGVMEGGTVARV
VKSRHAGFAEGDIVLSHSGWQGFALSDGVGLRKLDPAAAPVTTALGVLGMPGFTAYAGLLTIGQPKAGETVVVAAASGAV
GSAVGQIARIKGARAVGIAGGADKCAFVRRELGFDAVVDHRADNFAEQLKAACPDGIDVYFENVGGPVWDAVFPLLNEFA
RVPVCGLIAQYNTVAASADDRLPTLMQQVLHRSLTIRGFIQREFVDQRPAFYRDMAGWIASGQVRYREDIVDGLENAPQA
FMGLLEGKNFGKLIVRVAQ

Sequences:

>Translated_339_residues
MSTETNIRIVLAARPQGRPKPSDFRIESVGIAEPGEGELLLQILYLSLDPYMRGRMNATKSYAKPVEIDGVMEGGTVARV
VKSRHAGFAEGDIVLSHSGWQGFALSDGVGLRKLDPAAAPVTTALGVLGMPGFTAYAGLLTIGQPKAGETVVVAAASGAV
GSAVGQIARIKGARAVGIAGGADKCAFVRRELGFDAVVDHRADNFAEQLKAACPDGIDVYFENVGGPVWDAVFPLLNEFA
RVPVCGLIAQYNTVAASADDRLPTLMQQVLHRSLTIRGFIQREFVDQRPAFYRDMAGWIASGQVRYREDIVDGLENAPQA
FMGLLEGKNFGKLIVRVAQ
>Mature_338_residues
STETNIRIVLAARPQGRPKPSDFRIESVGIAEPGEGELLLQILYLSLDPYMRGRMNATKSYAKPVEIDGVMEGGTVARVV
KSRHAGFAEGDIVLSHSGWQGFALSDGVGLRKLDPAAAPVTTALGVLGMPGFTAYAGLLTIGQPKAGETVVVAAASGAVG
SAVGQIARIKGARAVGIAGGADKCAFVRRELGFDAVVDHRADNFAEQLKAACPDGIDVYFENVGGPVWDAVFPLLNEFAR
VPVCGLIAQYNTVAASADDRLPTLMQQVLHRSLTIRGFIQREFVDQRPAFYRDMAGWIASGQVRYREDIVDGLENAPQAF
MGLLEGKNFGKLIVRVAQ

Specific function: Unknown

COG id: COG2130

COG function: function code R; Putative NADP-dependent oxidoreductases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the NADP-dependent oxidoreductase L4BD family [H]

Homologues:

Organism=Homo sapiens, GI226059159, Length=325, Percent_Identity=40.6153846153846, Blast_Score=241, Evalue=8e-64,
Organism=Homo sapiens, GI226059133, Length=325, Percent_Identity=40.6153846153846, Blast_Score=241, Evalue=8e-64,
Organism=Homo sapiens, GI226246682, Length=343, Percent_Identity=37.0262390670554, Blast_Score=233, Evalue=2e-61,
Organism=Homo sapiens, GI226246680, Length=343, Percent_Identity=37.0262390670554, Blast_Score=233, Evalue=2e-61,
Organism=Homo sapiens, GI22748929, Length=343, Percent_Identity=37.0262390670554, Blast_Score=233, Evalue=2e-61,
Organism=Homo sapiens, GI226056130, Length=298, Percent_Identity=38.5906040268456, Blast_Score=198, Evalue=7e-51,
Organism=Homo sapiens, GI28557745, Length=216, Percent_Identity=27.7777777777778, Blast_Score=91, Evalue=2e-18,
Organism=Homo sapiens, GI194239674, Length=238, Percent_Identity=28.5714285714286, Blast_Score=69, Evalue=9e-12,
Organism=Homo sapiens, GI13236495, Length=238, Percent_Identity=28.5714285714286, Blast_Score=69, Evalue=9e-12,
Organism=Escherichia coli, GI226510941, Length=337, Percent_Identity=56.6765578635015, Blast_Score=390, Evalue=1e-110,
Organism=Caenorhabditis elegans, GI133901712, Length=361, Percent_Identity=32.6869806094183, Blast_Score=167, Evalue=1e-41,
Organism=Caenorhabditis elegans, GI133901710, Length=361, Percent_Identity=32.6869806094183, Blast_Score=166, Evalue=1e-41,
Organism=Caenorhabditis elegans, GI17507255, Length=119, Percent_Identity=36.1344537815126, Blast_Score=67, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6323504, Length=323, Percent_Identity=29.7213622291022, Blast_Score=119, Evalue=8e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013149
- InterPro:   IPR002085
- InterPro:   IPR011032
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00107 ADH_zinc_N [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 36157; Mature: 36026

Theoretical pI: Translated: 6.94; Mature: 6.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTETNIRIVLAARPQGRPKPSDFRIESVGIAEPGEGELLLQILYLSLDPYMRGRMNATK
CCCCCCEEEEEEECCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCHHHHCCCCHHH
SYAKPVEIDGVMEGGTVARVVKSRHAGFAEGDIVLSHSGWQGFALSDGVGLRKLDPAAAP
HHCCCCEECCEECCCHHHHHHHHHCCCCCCCCEEEEECCCCCEEECCCCCCCCCCCCHHH
VTTALGVLGMPGFTAYAGLLTIGQPKAGETVVVAAASGAVGSAVGQIARIKGARAVGIAG
HHHHHHHHCCCCHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCEEEECC
GADKCAFVRRELGFDAVVDHRADNFAEQLKAACPDGIDVYFENVGGPVWDAVFPLLNEFA
CCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCEEHHHHCCCHHHHHHHHHHHHHH
RVPVCGLIAQYNTVAASADDRLPTLMQQVLHRSLTIRGFIQREFVDQRPAFYRDMAGWIA
HCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
SGQVRYREDIVDGLENAPQAFMGLLEGKNFGKLIVRVAQ
CCCCHHHHHHHHHHHCCHHHHHHHHCCCCCCEEEEEECC
>Mature Secondary Structure 
STETNIRIVLAARPQGRPKPSDFRIESVGIAEPGEGELLLQILYLSLDPYMRGRMNATK
CCCCCEEEEEEECCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCHHHHCCCCHHH
SYAKPVEIDGVMEGGTVARVVKSRHAGFAEGDIVLSHSGWQGFALSDGVGLRKLDPAAAP
HHCCCCEECCEECCCHHHHHHHHHCCCCCCCCEEEEECCCCCEEECCCCCCCCCCCCHHH
VTTALGVLGMPGFTAYAGLLTIGQPKAGETVVVAAASGAVGSAVGQIARIKGARAVGIAG
HHHHHHHHCCCCHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCEEEECC
GADKCAFVRRELGFDAVVDHRADNFAEQLKAACPDGIDVYFENVGGPVWDAVFPLLNEFA
CCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCEEHHHHCCCHHHHHHHHHHHHHH
RVPVCGLIAQYNTVAASADDRLPTLMQQVLHRSLTIRGFIQREFVDQRPAFYRDMAGWIA
HCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
SGQVRYREDIVDGLENAPQAFMGLLEGKNFGKLIVRVAQ
CCCCHHHHHHHHHHHCCHHHHHHHHCCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]