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The map label for this gene is yfdE [H]

Identifier: 13475090

GI number: 13475090

Start: 4932707

End: 4933870

Strand: Direct

Name: yfdE [H]

Synonym: mlr6096

Alternate gene names: 13475090

Gene position: 4932707-4933870 (Clockwise)

Preceding gene: 13475089

Following gene: 13475091

Centisome position: 70.11

GC content: 58.85

Gene sequence:

>1164_bases
ATGCAGAACTCTCTTGAGGGGATCACTGTCGTAGCCGTGGAGCAGGCGGTGGCCGCGCCTTACGCATCGTCGCGCCTTGC
GGACGCCGGCGCCCGGGTCATCAAGGTTGAGAGGCCCGAAGGGGATTTTGCCCGAAACTACGACAAGTTGGTGCGTGGGC
AAAGCGCCTATTTCGTCTGGCTTAATCGGGGTAAGGAGTCGGTCTGTCTGGACCTGAGGTTGGAGGCGGATCGCGCCGTC
CTGGACACGCTCATTGCCAGTGCTGACGTCTTTATCCAGAATCTGAAGCCGGGCAGTATCCAAAAACTGGGTTTCGCGTC
TGCGGATCTGCGTCGACGTTTTCCGCGGCTGATCACCTGCGACATTTCTGGTTTCGGGGACATAGGGCCGTATTCCCATT
TGAAAGCCTATGATCTCATCGTCCAGGCCGAAACAGGTCTATGCGCGATCACCGGCAACCAACAGGGTCCCGCGCGTGTA
GGGGTCTCGGTTTGCGACATTTCGGCGGGCATGACGGCACATAGCGCCATTCTTCAGGCACTGTACCACCGCGAGGTTAC
CGGAGAAGGAACAGGCATCCAGGTGTCACTGTTCGATGCCGTCGCCGACTGGATGAATGTTCCGGTTTTGCAAAACGACT
ATAGCAGCTACCACACGGTACGCGCCGGCGTGAAACACCCGTCGCTTGCTCCATACGGCGCCTATCGTTGCGCCGACGGC
AAAGAGGTCATCTTTTCGGTTCAGAACGACCGCGAATGGGTGAATTTTTGCGAGAAGTTCCTGAAGCAGCCCGGGCTGAC
CCGCGCATCTGGCTTCGCCGATAATATGGAGCGTCTCGGTCACCGAGCACAACTTGATGAGATCATTGAACGGCGGTTTT
CCGAACTATCCTGCCACCAAGCGATGCAGGAGCTTGAGACGGCCGGCCTTGCATACGGCCGACTGAACGAAGTGGTGGAT
GTTTCAAATCATCCACACATTCGCAGGGTTGAGGTAAGCACACCCGAAGGAACCGTCGCGACGATAGCGCCGGCAGCGAT
TTTCAACTCGGAGCACCCCGCGCTGCGCCCAGTTCCGGCTCTTGGCGCCCATACTGAGGCGGTCCGCGAGGAGGTTCTGG
CGCTTTTGCGCGAAAGAGCCGCGTCAGCGGGAGACCGCGTCTGA

Upstream 100 bases:

>100_bases
GGCATTCTCAATTGTTGGGAACGAACAGAACCGCTTGCTGGCGATGCTGAACCGTCGTCGGACCCAAAACGAAAAAATTT
GATGACAAGCACGGTGTTGT

Downstream 100 bases:

>100_bases
GTAGGGGGAGTGCGCTCGCGGTTTGCGAAAAGCCTGTTTGCCCGGATCATCTCAGCGTGTAGACCATTCAGCAAGCCTCC
TGCCGTCACGTTCGCTAACA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 387; Mature: 387

Protein sequence:

>387_residues
MQNSLEGITVVAVEQAVAAPYASSRLADAGARVIKVERPEGDFARNYDKLVRGQSAYFVWLNRGKESVCLDLRLEADRAV
LDTLIASADVFIQNLKPGSIQKLGFASADLRRRFPRLITCDISGFGDIGPYSHLKAYDLIVQAETGLCAITGNQQGPARV
GVSVCDISAGMTAHSAILQALYHREVTGEGTGIQVSLFDAVADWMNVPVLQNDYSSYHTVRAGVKHPSLAPYGAYRCADG
KEVIFSVQNDREWVNFCEKFLKQPGLTRASGFADNMERLGHRAQLDEIIERRFSELSCHQAMQELETAGLAYGRLNEVVD
VSNHPHIRRVEVSTPEGTVATIAPAAIFNSEHPALRPVPALGAHTEAVREEVLALLRERAASAGDRV

Sequences:

>Translated_387_residues
MQNSLEGITVVAVEQAVAAPYASSRLADAGARVIKVERPEGDFARNYDKLVRGQSAYFVWLNRGKESVCLDLRLEADRAV
LDTLIASADVFIQNLKPGSIQKLGFASADLRRRFPRLITCDISGFGDIGPYSHLKAYDLIVQAETGLCAITGNQQGPARV
GVSVCDISAGMTAHSAILQALYHREVTGEGTGIQVSLFDAVADWMNVPVLQNDYSSYHTVRAGVKHPSLAPYGAYRCADG
KEVIFSVQNDREWVNFCEKFLKQPGLTRASGFADNMERLGHRAQLDEIIERRFSELSCHQAMQELETAGLAYGRLNEVVD
VSNHPHIRRVEVSTPEGTVATIAPAAIFNSEHPALRPVPALGAHTEAVREEVLALLRERAASAGDRV
>Mature_387_residues
MQNSLEGITVVAVEQAVAAPYASSRLADAGARVIKVERPEGDFARNYDKLVRGQSAYFVWLNRGKESVCLDLRLEADRAV
LDTLIASADVFIQNLKPGSIQKLGFASADLRRRFPRLITCDISGFGDIGPYSHLKAYDLIVQAETGLCAITGNQQGPARV
GVSVCDISAGMTAHSAILQALYHREVTGEGTGIQVSLFDAVADWMNVPVLQNDYSSYHTVRAGVKHPSLAPYGAYRCADG
KEVIFSVQNDREWVNFCEKFLKQPGLTRASGFADNMERLGHRAQLDEIIERRFSELSCHQAMQELETAGLAYGRLNEVVD
VSNHPHIRRVEVSTPEGTVATIAPAAIFNSEHPALRPVPALGAHTEAVREEVLALLRERAASAGDRV

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=378, Percent_Identity=30.6878306878307, Blast_Score=192, Evalue=5e-49,
Organism=Homo sapiens, GI300863124, Length=404, Percent_Identity=28.7128712871287, Blast_Score=182, Evalue=6e-46,
Organism=Homo sapiens, GI300863126, Length=377, Percent_Identity=27.3209549071618, Blast_Score=149, Evalue=4e-36,
Organism=Homo sapiens, GI13376042, Length=404, Percent_Identity=26.2376237623762, Blast_Score=143, Evalue=3e-34,
Organism=Homo sapiens, GI266456254, Length=377, Percent_Identity=26.525198938992, Blast_Score=100, Evalue=4e-21,
Organism=Homo sapiens, GI42794625, Length=377, Percent_Identity=26.525198938992, Blast_Score=100, Evalue=4e-21,
Organism=Homo sapiens, GI266458397, Length=244, Percent_Identity=30.327868852459, Blast_Score=94, Evalue=3e-19,
Organism=Homo sapiens, GI266458393, Length=244, Percent_Identity=30.327868852459, Blast_Score=93, Evalue=3e-19,
Organism=Homo sapiens, GI266458395, Length=143, Percent_Identity=34.965034965035, Blast_Score=79, Evalue=7e-15,
Organism=Homo sapiens, GI42822893, Length=143, Percent_Identity=35.6643356643357, Blast_Score=79, Evalue=1e-14,
Organism=Escherichia coli, GI87082093, Length=374, Percent_Identity=31.283422459893, Blast_Score=191, Evalue=1e-49,
Organism=Escherichia coli, GI1788717, Length=401, Percent_Identity=28.428927680798, Blast_Score=135, Evalue=6e-33,
Organism=Escherichia coli, GI1786222, Length=244, Percent_Identity=27.0491803278689, Blast_Score=74, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI32564160, Length=206, Percent_Identity=28.6407766990291, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24648431, Length=392, Percent_Identity=32.6530612244898, Blast_Score=198, Evalue=5e-51,
Organism=Drosophila melanogaster, GI24585488, Length=206, Percent_Identity=26.2135922330097, Blast_Score=74, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 42227; Mature: 42227

Theoretical pI: Translated: 6.29; Mature: 6.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQNSLEGITVVAVEQAVAAPYASSRLADAGARVIKVERPEGDFARNYDKLVRGQSAYFVW
CCCCCCCEEEEEEHHHHHCCCHHHHHHHCCCEEEEEECCCCHHHHHHHHHHCCCCEEEEE
LNRGKESVCLDLRLEADRAVLDTLIASADVFIQNLKPGSIQKLGFASADLRRRFPRLITC
EECCCCEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCHHHHHCCCCEEEE
DISGFGDIGPYSHLKAYDLIVQAETGLCAITGNQQGPARVGVSVCDISAGMTAHSAILQA
ECCCCCCCCCCHHHHHEEEEEEECCCEEEEECCCCCCHHHCEEEEECCCCCHHHHHHHHH
LYHREVTGEGTGIQVSLFDAVADWMNVPVLQNDYSSYHTVRAGVKHPSLAPYGAYRCADG
HHHHHCCCCCCCEEEEHHHHHHHHHCCCCEECCCHHHHHHHHCCCCCCCCCCCCEEECCC
KEVIFSVQNDREWVNFCEKFLKQPGLTRASGFADNMERLGHRAQLDEIIERRFSELSCHQ
CEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHH
AMQELETAGLAYGRLNEVVDVSNHPHIRRVEVSTPEGTVATIAPAAIFNSEHPALRPVPA
HHHHHHHHCCHHHHHHHHHCCCCCCCEEEEEECCCCCCEEEECHHHHCCCCCCCCCCCCC
LGAHTEAVREEVLALLRERAASAGDRV
CCCHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MQNSLEGITVVAVEQAVAAPYASSRLADAGARVIKVERPEGDFARNYDKLVRGQSAYFVW
CCCCCCCEEEEEEHHHHHCCCHHHHHHHCCCEEEEEECCCCHHHHHHHHHHCCCCEEEEE
LNRGKESVCLDLRLEADRAVLDTLIASADVFIQNLKPGSIQKLGFASADLRRRFPRLITC
EECCCCEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCHHHHHCCCCEEEE
DISGFGDIGPYSHLKAYDLIVQAETGLCAITGNQQGPARVGVSVCDISAGMTAHSAILQA
ECCCCCCCCCCHHHHHEEEEEEECCCEEEEECCCCCCHHHCEEEEECCCCCHHHHHHHHH
LYHREVTGEGTGIQVSLFDAVADWMNVPVLQNDYSSYHTVRAGVKHPSLAPYGAYRCADG
HHHHHCCCCCCCEEEEHHHHHHHHHCCCCEECCCHHHHHHHHCCCCCCCCCCCCEEECCC
KEVIFSVQNDREWVNFCEKFLKQPGLTRASGFADNMERLGHRAQLDEIIERRFSELSCHQ
CEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHH
AMQELETAGLAYGRLNEVVDVSNHPHIRRVEVSTPEGTVATIAPAAIFNSEHPALRPVPA
HHHHHHHHCCHHHHHHHHHCCCCCCCEEEEEECCCCCCEEEECHHHHCCCCCCCCCCCCC
LGAHTEAVREEVLALLRERAASAGDRV
CCCHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]