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The map label for this gene is rnk [C]

Identifier: 13473408

GI number: 13473408

Start: 3195045

End: 3195467

Strand: Reverse

Name: rnk [C]

Synonym: mll3994

Alternate gene names: 13473408

Gene position: 3195467-3195045 (Counterclockwise)

Preceding gene: 13473409

Following gene: 13473407

Centisome position: 45.42

GC content: 68.09

Gene sequence:

>423_bases
ATGCAACATGCAACAGGACCGCGTCCATCGAGCCGGATTCTGATCAGCGACACCGACCATGACAGGTTGACCGGCCTGGC
GAGAGCCTTGCTCGACCGTGCCCCCGAGACGGCCGAGGAGCTGCTCTTCGAAATGGACCGCGCCGTCGTCACGGACGCGG
CGGCGATGCCGGCCGACGTGGTGCGTATGGGATCGGCCGTGACGGTCCGCGGCGAAGGCGGGGCGACCCAGCGCATCATG
CTGGTCTATCCCGGCGAAGCCGACATTGCCGAAAACAGGATCTCGGTGCTGACGCCGATGGGAACGGCGCTCATCGGAGC
GTCGATCGGGCAGGCGGTGTGCTGGAGCAGTCGTGGCGGCCGTGAGCTGTCGGTGACCGTCGAAGCCGTCGACACGCCGG
TCTCCGGCGCGCAGCGGCGCTGA

Upstream 100 bases:

>100_bases
AGCCGTATAGCCCTTCGCGGCTGCCGGCTTTTTCATCACGCCGCCGTCAGTGCGGTGGCAAGCGCGCATCCATTCGATGC
GCCGATCCATGAGGTTTGCC

Downstream 100 bases:

>100_bases
TCGTGGAGGCGGTGATGAAGAGTACGAATTGCTGTCTGACGACGAAGGACCGTGCCGTCCTCGAAGTCATGCTGGAGCGC
CGGCGGGCATTCGCGGATCC

Product: nucleoside diphosphate kinase regulator

Products: NA

Alternate protein names: Nucleoside Diphosphate Kinase Regulator; Regulator Of Nucleoside Diphosphate Kinase; Transcription Elongation Factor GreA/GreB Region; Transcription Elongation Factor; Transcription Elongation Factor GreA/GreB Family; Regulatory Protein

Number of amino acids: Translated: 140; Mature: 140

Protein sequence:

>140_residues
MQHATGPRPSSRILISDTDHDRLTGLARALLDRAPETAEELLFEMDRAVVTDAAAMPADVVRMGSAVTVRGEGGATQRIM
LVYPGEADIAENRISVLTPMGTALIGASIGQAVCWSSRGGRELSVTVEAVDTPVSGAQRR

Sequences:

>Translated_140_residues
MQHATGPRPSSRILISDTDHDRLTGLARALLDRAPETAEELLFEMDRAVVTDAAAMPADVVRMGSAVTVRGEGGATQRIM
LVYPGEADIAENRISVLTPMGTALIGASIGQAVCWSSRGGRELSVTVEAVDTPVSGAQRR
>Mature_140_residues
MQHATGPRPSSRILISDTDHDRLTGLARALLDRAPETAEELLFEMDRAVVTDAAAMPADVVRMGSAVTVRGEGGATQRIM
LVYPGEADIAENRISVLTPMGTALIGASIGQAVCWSSRGGRELSVTVEAVDTPVSGAQRR

Specific function: Rnk And Sspa Can Functionally Replace P.Aeruginosa Alginate Regulatory Gene Algr2. [C]

COG id: COG0782

COG function: function code K; Transcription elongation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786827, Length=114, Percent_Identity=34.2105263157895, Blast_Score=60, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 14771; Mature: 14771

Theoretical pI: Translated: 4.91; Mature: 4.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQHATGPRPSSRILISDTDHDRLTGLARALLDRAPETAEELLFEMDRAVVTDAAAMPADV
CCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHH
VRMGSAVTVRGEGGATQRIMLVYPGEADIAENRISVLTPMGTALIGASIGQAVCWSSRGG
HHCCCEEEEECCCCCCEEEEEEECCCCCCCCCCEEEECCCCHHHHHHHHCHHEEECCCCC
RELSVTVEAVDTPVSGAQRR
CEEEEEEEEECCCCCCCCCC
>Mature Secondary Structure
MQHATGPRPSSRILISDTDHDRLTGLARALLDRAPETAEELLFEMDRAVVTDAAAMPADV
CCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHH
VRMGSAVTVRGEGGATQRIMLVYPGEADIAENRISVLTPMGTALIGASIGQAVCWSSRGG
HHCCCEEEEECCCCCCEEEEEEECCCCCCCCCCEEEECCCCHHHHHHHHCHHEEECCCCC
RELSVTVEAVDTPVSGAQRR
CEEEEEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA