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The map label for this gene is ydfH [C]

Identifier: 13473397

GI number: 13473397

Start: 3184928

End: 3185620

Strand: Direct

Name: ydfH [C]

Synonym: mlr3982

Alternate gene names: 13473397

Gene position: 3184928-3185620 (Clockwise)

Preceding gene: 13473384

Following gene: 13473400

Centisome position: 45.27

GC content: 67.97

Gene sequence:

>693_bases
ATGATATATTCGGGATATATCAGGAGATCGCCTTTGATATCCATGGAAGCAACCATGACGTCCGAGCCGGTGGCGGCCAG
GGCCTATCGCGTGCTCGAGCACATGATCGTCACGCTGGAACTGGCGCCCTCGAGCTTTGTCACCGAGGGGGCGCTTATCG
AAAAGCTGGACCTCGGCCGCACTCCAGTGCGCGAGGCGATCCAGCGGCTGGCATGGGAAGGGCTGCTGGACGTCAGACCG
CGCGCCGGCATCGCGATCGCGCCGCTGCATCCCGGCGACTGGCTGCGCGTGCTCGACGCCCGGCGCGGCGTCGAGGTGGT
GCTGGCCCGCTCGGCCGCCCGCTTCGTCACCCGCGAGGCCGCCGACCTGTTTCACGAGGCGGCGCTGGCCATGCAGAAGG
CGGTCATCTCGGGCAATGTGCTTGCCTTCATCCAGGCCGACAAGGCGCTCGACGAGGCACTGGCGCTGGCCGCCGACAAT
CCCTTCGCCGCGCGGCTGGCCGCGCCCCTGCAAACCCACAGCCGCCGCTTCTGGTTCCGCTACAAGGCCGATACGGGCCT
GGCCGAATCAGCCGAGCATCATGTCGCGCTGATCCGCTCGATCCTCGACGGCGACGAGGAGGCAGCCGCCAAGGATGCCA
AGCGGCTGATGGCGCTGCTGCGCAGCCATGCCGAGGTCGCCGCGACGCGCTGA

Upstream 100 bases:

>100_bases
TCGTAACGGCGGGGAAAACTCCGGTCCACATGGTCGCGTCTCCATCTGATATATCAGCCGTATATCTGTTAAGAAGCCCG
CTGTCAATGCAGAATCCGTT

Downstream 100 bases:

>100_bases
TCGGGCGATCAGATTCCTTGCTTGGTGGCGATGGCGGTATCCTCCCATCCCTCACCGGTCGCGAAGATGCAGCTTCGGCC
CTGCACGTCGGTCACCAGCA

Product: putative transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator GntR Family; Transcriptional Regulator; GntR Family Regulatory Protein; Transcriptional Regulator GntR; Transcriptional Regulator Protein GntR Family; Transcriptional Regulator Protein; Transcriptional Regulator GntR Family Protein; Regulatory Protein GntR HTH

Number of amino acids: Translated: 230; Mature: 230

Protein sequence:

>230_residues
MIYSGYIRRSPLISMEATMTSEPVAARAYRVLEHMIVTLELAPSSFVTEGALIEKLDLGRTPVREAIQRLAWEGLLDVRP
RAGIAIAPLHPGDWLRVLDARRGVEVVLARSAARFVTREAADLFHEAALAMQKAVISGNVLAFIQADKALDEALALAADN
PFAARLAAPLQTHSRRFWFRYKADTGLAESAEHHVALIRSILDGDEEAAAKDAKRLMALLRSHAEVAATR

Sequences:

>Translated_230_residues
MIYSGYIRRSPLISMEATMTSEPVAARAYRVLEHMIVTLELAPSSFVTEGALIEKLDLGRTPVREAIQRLAWEGLLDVRP
RAGIAIAPLHPGDWLRVLDARRGVEVVLARSAARFVTREAADLFHEAALAMQKAVISGNVLAFIQADKALDEALALAADN
PFAARLAAPLQTHSRRFWFRYKADTGLAESAEHHVALIRSILDGDEEAAAKDAKRLMALLRSHAEVAATR
>Mature_230_residues
MIYSGYIRRSPLISMEATMTSEPVAARAYRVLEHMIVTLELAPSSFVTEGALIEKLDLGRTPVREAIQRLAWEGLLDVRP
RAGIAIAPLHPGDWLRVLDARRGVEVVLARSAARFVTREAADLFHEAALAMQKAVISGNVLAFIQADKALDEALALAADN
PFAARLAAPLQTHSRRFWFRYKADTGLAESAEHHVALIRSILDGDEEAAAKDAKRLMALLRSHAEVAATR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25225; Mature: 25225

Theoretical pI: Translated: 7.98; Mature: 7.98

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIYSGYIRRSPLISMEATMTSEPVAARAYRVLEHMIVTLELAPSSFVTEGALIEKLDLGR
CCCCCCCCCCCCEEEEHHCCCCHHHHHHHHHHHHHHHHEEECCCHHHHCCHHHHHHCCCC
TPVREAIQRLAWEGLLDVRPRAGIAIAPLHPGDWLRVLDARRGVEVVLARSAARFVTREA
CHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHH
ADLFHEAALAMQKAVISGNVLAFIQADKALDEALALAADNPFAARLAAPLQTHSRRFWFR
HHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEEE
YKADTGLAESAEHHVALIRSILDGDEEAAAKDAKRLMALLRSHAEVAATR
EECCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIYSGYIRRSPLISMEATMTSEPVAARAYRVLEHMIVTLELAPSSFVTEGALIEKLDLGR
CCCCCCCCCCCCEEEEHHCCCCHHHHHHHHHHHHHHHHEEECCCHHHHCCHHHHHHCCCC
TPVREAIQRLAWEGLLDVRPRAGIAIAPLHPGDWLRVLDARRGVEVVLARSAARFVTREA
CHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHH
ADLFHEAALAMQKAVISGNVLAFIQADKALDEALALAADNPFAARLAAPLQTHSRRFWFR
HHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEEE
YKADTGLAESAEHHVALIRSILDGDEEAAAKDAKRLMALLRSHAEVAATR
EECCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA