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The map label for this gene is ybgF [C]

Identifier: 13473328

GI number: 13473328

Start: 3123331

End: 3124443

Strand: Reverse

Name: ybgF [C]

Synonym: mll3886

Alternate gene names: 13473328

Gene position: 3124443-3123331 (Counterclockwise)

Preceding gene: 13473329

Following gene: 13473327

Centisome position: 44.41

GC content: 64.69

Gene sequence:

>1113_bases
ATGCATTTGAGATCGGTTCTGAGCGGCACGCTTGCGGCGCTGCTCCTATCAGGCTTCACCGCCCTGGCAAGCGGCCCGGG
GGCAAGCGGCCCAGGGCAGTCAACCGACAGCGGCTTTTCCTTCCATCTGCCGAGCCTCGAACTGCCGAGCCTCTTCGGCG
ACAAGAAGAAACCCGACCAGGTCCAGTTCGCGCAGCAGTCGAACGGCGCCGGCGCCACCGGGCTCGAGGACCAGCTGCGC
CAGATGAACGGCAAGATCGAAGAGCTCAATTTCCAGATCCTGCAGATGCAGGAACAGATGCGCAAGCAGCAGGAAGACAA
CGAGTTCCGCTTCCAGCAGCTTGAAGGCGGCGCGCAAGGCGGACAGCCTCCGGCGCCGAAGAAATCCGACGCCACCACCA
ACACCAACACCGACGTGGCGGCGGCCCCGGCAACCCAGGCTCCGGCTGATGCCGGCGCCGCGCCTGGCGGCAATCAGTCC
GCGGGCGGCAAGACAGTCGAGGACGTCATCGTCGAATCGCCCGAAGGCGACCCCGGCAAGGTGATTCCCGGCACGGGAGC
TCCGGAAAAGACCTTCGGTTCCATCACTGTCGACAAGAACGGCAATGTGATCGATGCCGGCGGCAACACCCAGTCGACTG
CGCCGACGCAAGACGCGGCCCCAGCCACCAAGGCCCCGGCCAAGGCCGGCAAGTCCAACGGCACGATCGTCGCGGCGCTG
CCCTCCACCAACGACCCGGAAGAGCTTTACCGCAATTCCTATCAGTTCATCCTGTCGGGCGACTACGGCACCGCCGAACA
GGGTTTTCGCGATCATATCTCCCGCTTCCCGCGTGATGCGAAGGCGGCGGACGCCCATTACTGGCTGGGTGAATCGCTGC
TTGGCCAGCAGAAATACCGCGACGCGGCCGAGGTCTTCCTCGCCGCCAGCAAGGACTACCCGAAGGCCAAGAAGGCACCC
GACATGCTGTTGAAGCTCGGCGTGTCGCTGGTCGGCCTCAAGCAGCACGACGTCGCCTGCGCCACCTTCAGCGAAGTCGG
CAAGCGCTACCCCGACATCTCCAGTGCACTCAAGGAACGCGTCAAGCAGGAGAAGGCCCTGGCTGCGTGCTGA

Upstream 100 bases:

>100_bases
TTGGCCGAAGTCTCGCGTCCTGCTATGAGCCGAGGGCGCTTGGCTGGTCCCATCCTGATTGGAAGGCGCGAACAGACTAA
CGACACACGGCGAGAGGCAC

Downstream 100 bases:

>100_bases
TTTTTCCCAGGCATGTCTTTGTCCCAGGACCGCGACCACTTTCGGACGACATGCGTTGATGCTCGACACCGAGCCTGACC
TTTCGACCAGACTTTTTTCG

Product: hypothetical protein

Products: NA

Alternate protein names: L-Pal System YbgF; TPR Repeat-Containing Protein; TPR RepeatMolluscan Rhodopsin C-Terminal Domain Protein; TPR Repeat Protein; L System Periplasmic Component YbgF; Tetratricopeptide TPR2 Protein

Number of amino acids: Translated: 370; Mature: 370

Protein sequence:

>370_residues
MHLRSVLSGTLAALLLSGFTALASGPGASGPGQSTDSGFSFHLPSLELPSLFGDKKKPDQVQFAQQSNGAGATGLEDQLR
QMNGKIEELNFQILQMQEQMRKQQEDNEFRFQQLEGGAQGGQPPAPKKSDATTNTNTDVAAAPATQAPADAGAAPGGNQS
AGGKTVEDVIVESPEGDPGKVIPGTGAPEKTFGSITVDKNGNVIDAGGNTQSTAPTQDAAPATKAPAKAGKSNGTIVAAL
PSTNDPEELYRNSYQFILSGDYGTAEQGFRDHISRFPRDAKAADAHYWLGESLLGQQKYRDAAEVFLAASKDYPKAKKAP
DMLLKLGVSLVGLKQHDVACATFSEVGKRYPDISSALKERVKQEKALAAC

Sequences:

>Translated_370_residues
MHLRSVLSGTLAALLLSGFTALASGPGASGPGQSTDSGFSFHLPSLELPSLFGDKKKPDQVQFAQQSNGAGATGLEDQLR
QMNGKIEELNFQILQMQEQMRKQQEDNEFRFQQLEGGAQGGQPPAPKKSDATTNTNTDVAAAPATQAPADAGAAPGGNQS
AGGKTVEDVIVESPEGDPGKVIPGTGAPEKTFGSITVDKNGNVIDAGGNTQSTAPTQDAAPATKAPAKAGKSNGTIVAAL
PSTNDPEELYRNSYQFILSGDYGTAEQGFRDHISRFPRDAKAADAHYWLGESLLGQQKYRDAAEVFLAASKDYPKAKKAP
DMLLKLGVSLVGLKQHDVACATFSEVGKRYPDISSALKERVKQEKALAAC
>Mature_370_residues
MHLRSVLSGTLAALLLSGFTALASGPGASGPGQSTDSGFSFHLPSLELPSLFGDKKKPDQVQFAQQSNGAGATGLEDQLR
QMNGKIEELNFQILQMQEQMRKQQEDNEFRFQQLEGGAQGGQPPAPKKSDATTNTNTDVAAAPATQAPADAGAAPGGNQS
AGGKTVEDVIVESPEGDPGKVIPGTGAPEKTFGSITVDKNGNVIDAGGNTQSTAPTQDAAPATKAPAKAGKSNGTIVAAL
PSTNDPEELYRNSYQFILSGDYGTAEQGFRDHISRFPRDAKAADAHYWLGESLLGQQKYRDAAEVFLAASKDYPKAKKAP
DMLLKLGVSLVGLKQHDVACATFSEVGKRYPDISSALKERVKQEKALAAC

Specific function: Unknown

COG id: COG1729

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786963, Length=148, Percent_Identity=31.0810810810811, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 38803; Mature: 38803

Theoretical pI: Translated: 5.47; Mature: 5.47

Prosite motif: PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHLRSVLSGTLAALLLSGFTALASGPGASGPGQSTDSGFSFHLPSLELPSLFGDKKKPDQ
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCHHHHCCCCCCCH
VQFAQQSNGAGATGLEDQLRQMNGKIEELNFQILQMQEQMRKQQEDNEFRFQQLEGGAQG
HHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCC
GQPPAPKKSDATTNTNTDVAAAPATQAPADAGAAPGGNQSAGGKTVEDVIVESPEGDPGK
CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHEECCCCCCCC
VIPGTGAPEKTFGSITVDKNGNVIDAGGNTQSTAPTQDAAPATKAPAKAGKSNGTIVAAL
CCCCCCCCCCCCCEEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCHHCCCCCCEEEEEC
PSTNDPEELYRNSYQFILSGDYGTAEQGFRDHISRFPRDAKAADAHYWLGESLLGQQKYR
CCCCCHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCHHCCHHHHHHHHHHHHHHHH
DAAEVFLAASKDYPKAKKAPDMLLKLGVSLVGLKQHDVACATFSEVGKRYPDISSALKER
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHH
VKQEKALAAC
HHHHHHHHCC
>Mature Secondary Structure
MHLRSVLSGTLAALLLSGFTALASGPGASGPGQSTDSGFSFHLPSLELPSLFGDKKKPDQ
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCHHHHCCCCCCCH
VQFAQQSNGAGATGLEDQLRQMNGKIEELNFQILQMQEQMRKQQEDNEFRFQQLEGGAQG
HHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCC
GQPPAPKKSDATTNTNTDVAAAPATQAPADAGAAPGGNQSAGGKTVEDVIVESPEGDPGK
CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHEECCCCCCCC
VIPGTGAPEKTFGSITVDKNGNVIDAGGNTQSTAPTQDAAPATKAPAKAGKSNGTIVAAL
CCCCCCCCCCCCCEEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCHHCCCCCCEEEEEC
PSTNDPEELYRNSYQFILSGDYGTAEQGFRDHISRFPRDAKAADAHYWLGESLLGQQKYR
CCCCCHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCHHCCHHHHHHHHHHHHHHHH
DAAEVFLAASKDYPKAKKAPDMLLKLGVSLVGLKQHDVACATFSEVGKRYPDISSALKER
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHH
VKQEKALAAC
HHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA