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The map label for this gene is xylF [H]

Identifier: 13473195

GI number: 13473195

Start: 2991822

End: 2992862

Strand: Reverse

Name: xylF [H]

Synonym: mll3713

Alternate gene names: 13473195

Gene position: 2992862-2991822 (Counterclockwise)

Preceding gene: 13473197

Following gene: 13473194

Centisome position: 42.54

GC content: 63.98

Gene sequence:

>1041_bases
ATGAAGAGATTCACAGCCGCCATCCTGGCGGGTGTCGCCATGTCGCTGACGCTGGCGTCGGTCGCGCAGGCGAAGGACAA
GGTCATCGGCGTTTCGTGGTCCAACTTCCAGGAAGAGCGCTGGAAGACCGACGAGGCCGCCATGAAGAAGGCCATCGAGG
CCGCCGGCGACAAGTACATTTCCGCCGACGCGCAGTCCAATCCTGGCAAGCAGCTTACCGATGTCGAGAGCCTGATCTCG
CAGGGCGCCAATTCGCTGATCATCCTGGCGCAGGATGCCTCGGCCATCGGCCCGGCCGTGCAGAAGGCGCTGGACGAAGG
CATTCCGGTCGTCGGCTATGACCGCCTGATCGAGAACAAGGACGTCTTCTACCTGACCTTCGACAACAAGGAAGTCGGCC
GCTTGCAGGCCAGCGCGGTGTTCAAGGCCAAGCCGGAAGGCAACTATGTCTTCATCAAGGGCTCGGGCGCCGATCCGAAT
GCCGACTTCCTGTTCGCGGGCTCGATGGAAGTGCTCAAGGCTGCCATCGACAGCGGCAAGATCAAGAATGTCGGCGAGGC
CTATACGGACGGCTGGCTGCCCGCCAACGCCCAGAAGAACATGGAGCAGTTCCTGACCGCCAACGACAACAAGGTCGACG
CGGTCGTCGCTGCCAATGACGGCACCGCCGGCGGCGTCGTCGCGGCGCTGACGGCGCAGGGTCTTGCCGGCACCGTGCCG
GTCTCGGGTCAGGACGGCGACCATGCCGCGCTGAACCGCATCGCGCTCGGCACCCAGACCGTGTCGGTGTGGAAGGACGC
GCGCGAACTCGGCAAGAACGCCGCCGAGATCGCCTCGCAGCTGGCCGACGGCAAGAAGATGGCTGACATCGCCGGTGTAA
AGGACTTCACGACGCCTGGCGGCAACACCGTCAAGTCGCTGTTCCTGACCCCGGTCGCCATCACCAAGGACAATCTCAAC
GTCGTCATCGACGCCGGTTGGATCAAGAAGGACGAAGTCTGCGCGGGTGTCGCCGCCGGCAGCGTCGCAGCCTGCAAGTA
A

Upstream 100 bases:

>100_bases
GTGTTGGATCAGTGTTTTTTCGAGGCTCGAAAAAATAGAGCCTCTGTGCCGGCCTTCGGGCCAGTTTGGTCGCGCCATAC
GCGGCGCAGGGAGGAATATC

Downstream 100 bases:

>100_bases
ACGGCGCAATACCGTTCGATATCGACGCCGCGGCCCAAAAGCCGCGGCGTTTCTCAAGGGGCTTCCCGCTTCAAATGACC
GCGGAAAGCAAATAGCATCC

Product: xylose binding protein transport system, xylF

Products: ADP; phosphate; xylose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 346; Mature: 346

Protein sequence:

>346_residues
MKRFTAAILAGVAMSLTLASVAQAKDKVIGVSWSNFQEERWKTDEAAMKKAIEAAGDKYISADAQSNPGKQLTDVESLIS
QGANSLIILAQDASAIGPAVQKALDEGIPVVGYDRLIENKDVFYLTFDNKEVGRLQASAVFKAKPEGNYVFIKGSGADPN
ADFLFAGSMEVLKAAIDSGKIKNVGEAYTDGWLPANAQKNMEQFLTANDNKVDAVVAANDGTAGGVVAALTAQGLAGTVP
VSGQDGDHAALNRIALGTQTVSVWKDARELGKNAAEIASQLADGKKMADIAGVKDFTTPGGNTVKSLFLTPVAITKDNLN
VVIDAGWIKKDEVCAGVAAGSVAACK

Sequences:

>Translated_346_residues
MKRFTAAILAGVAMSLTLASVAQAKDKVIGVSWSNFQEERWKTDEAAMKKAIEAAGDKYISADAQSNPGKQLTDVESLIS
QGANSLIILAQDASAIGPAVQKALDEGIPVVGYDRLIENKDVFYLTFDNKEVGRLQASAVFKAKPEGNYVFIKGSGADPN
ADFLFAGSMEVLKAAIDSGKIKNVGEAYTDGWLPANAQKNMEQFLTANDNKVDAVVAANDGTAGGVVAALTAQGLAGTVP
VSGQDGDHAALNRIALGTQTVSVWKDARELGKNAAEIASQLADGKKMADIAGVKDFTTPGGNTVKSLFLTPVAITKDNLN
VVIDAGWIKKDEVCAGVAAGSVAACK
>Mature_346_residues
MKRFTAAILAGVAMSLTLASVAQAKDKVIGVSWSNFQEERWKTDEAAMKKAIEAAGDKYISADAQSNPGKQLTDVESLIS
QGANSLIILAQDASAIGPAVQKALDEGIPVVGYDRLIENKDVFYLTFDNKEVGRLQASAVFKAKPEGNYVFIKGSGADPN
ADFLFAGSMEVLKAAIDSGKIKNVGEAYTDGWLPANAQKNMEQFLTANDNKVDAVVAANDGTAGGVVAALTAQGLAGTVP
VSGQDGDHAALNRIALGTQTVSVWKDARELGKNAAEIASQLADGKKMADIAGVKDFTTPGGNTVKSLFLTPVAITKDNLN
VVIDAGWIKKDEVCAGVAAGSVAACK

Specific function: Involved in the high-affinity D-xylose membrane transport system. Binds with high affinity to xylose [H]

COG id: COG4213

COG function: function code G; ABC-type xylose transport system, periplasmic component

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1789990, Length=318, Percent_Identity=44.3396226415094, Blast_Score=250, Evalue=1e-67,
Organism=Escherichia coli, GI1788473, Length=300, Percent_Identity=29, Blast_Score=92, Evalue=6e-20,
Organism=Escherichia coli, GI1790192, Length=292, Percent_Identity=27.0547945205479, Blast_Score=61, Evalue=1e-10,

Paralogues:

None

Copy number: 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 100 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001761
- InterPro:   IPR013456 [H]

Pfam domain/function: PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 36009; Mature: 36009

Theoretical pI: Translated: 4.84; Mature: 4.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRFTAAILAGVAMSLTLASVAQAKDKVIGVSWSNFQEERWKTDEAAMKKAIEAAGDKYI
CCHHHHHHHHHHHHHHHHHHHHHHHHCEEECCHHCHHHHHCCCHHHHHHHHHHHCCCCEE
SADAQSNPGKQLTDVESLISQGANSLIILAQDASAIGPAVQKALDEGIPVVGYDRLIENK
ECCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHCCCCEEEHHHHHCCC
DVFYLTFDNKEVGRLQASAVFKAKPEGNYVFIKGSGADPNADFLFAGSMEVLKAAIDSGK
CEEEEEECCCCCCCEEEEEEEEECCCCCEEEEECCCCCCCCCEEEECCHHHHHHHHCCCC
IKNVGEAYTDGWLPANAQKNMEQFLTANDNKVDAVVAANDGTAGGVVAALTAQGLAGTVP
CCCCCHHHCCCCCCCCHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHEEEHHCCCCCCCC
VSGQDGDHAALNRIALGTQTVSVWKDARELGKNAAEIASQLADGKKMADIAGVKDFTTPG
CCCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHCCCCCCCCCC
GNTVKSLFLTPVAITKDNLNVVIDAGWIKKDEVCAGVAAGSVAACK
CCHHHHHHCCEEEEEECCCEEEEECCCCCCHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MKRFTAAILAGVAMSLTLASVAQAKDKVIGVSWSNFQEERWKTDEAAMKKAIEAAGDKYI
CCHHHHHHHHHHHHHHHHHHHHHHHHCEEECCHHCHHHHHCCCHHHHHHHHHHHCCCCEE
SADAQSNPGKQLTDVESLISQGANSLIILAQDASAIGPAVQKALDEGIPVVGYDRLIENK
ECCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHCCCCEEEHHHHHCCC
DVFYLTFDNKEVGRLQASAVFKAKPEGNYVFIKGSGADPNADFLFAGSMEVLKAAIDSGK
CEEEEEECCCCCCCEEEEEEEEECCCCCEEEEECCCCCCCCCEEEECCHHHHHHHHCCCC
IKNVGEAYTDGWLPANAQKNMEQFLTANDNKVDAVVAANDGTAGGVVAALTAQGLAGTVP
CCCCCHHHCCCCCCCCHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHEEEHHCCCCCCCC
VSGQDGDHAALNRIALGTQTVSVWKDARELGKNAAEIASQLADGKKMADIAGVKDFTTPG
CCCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHCCCCCCCCCC
GNTVKSLFLTPVAITKDNLNVVIDAGWIKKDEVCAGVAAGSVAACK
CCHHHHHHCCEEEEEECCCEEEEECCCCCCHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; xylose [Periplasm]; H2O [C]

Specific reaction: ATP + xylose [Periplasm] + H2O = ADP + phosphate + xylose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 8581399; 9298646 [H]