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The map label for this gene is abfA [H]

Identifier: 13473100

GI number: 13473100

Start: 2895244

End: 2896749

Strand: Reverse

Name: abfA [H]

Synonym: mll3591

Alternate gene names: 13473100

Gene position: 2896749-2895244 (Counterclockwise)

Preceding gene: 13473101

Following gene: 13473099

Centisome position: 41.17

GC content: 62.95

Gene sequence:

>1506_bases
ATGAAGGCCAGAGTCACGGCGAACGCGGCCTATGCCATCGCGGATATCGACAAACGTCTCTACGGCTCGTTTCTCGAGCA
CCTTGGCCGGGCGGTCTACACGGGCATCTACGAGCCCGGACATCCGCAAGCGGACGCAGAGGGGATGCGCAAGGACGTGA
TCGAGCTGGTGCGTGCGCTCGACACACCGATCTGCCGTTACCCGGGTGGCAACTTCGTGTCCGCCTACAATTGGGAGGAC
GGCATAGGCCCAAAGGAGAACCGCCCGCGGCGGCTCGATCTTGCCTGGCGCACCACGGAGCCGAACCTGGTTGGAATCCA
CGAATTCGCCGACTGGGCCGAAAAAGCCGGCACCGAGATGATGCTTGCGGTCAATCTCGGTTCCCGCGGCCTCGACGAGG
CGCGGGCCTTCGTCGAATACGTCAACCACCCGGGCGGCAGCTACTGGTCCGACCTCAGGGCCACGAACGGACGCGCGCAA
CCCTGGAACTGCCGCCTCTGGTGTCTCGGCAATGAAATGGACGGTCCCTGGCAGGTCGGCCACAAGTCGGCGAGCGAATA
CGGCCATCTCGCCAACGAGACCGCCAAGGCGCTGCGCGGTCTCGACCCGACGGTGGAACTGGTCGTCTGCGGCTCGTCGC
ATTCCAATATGCCGACCTATCCGCAGTGGGAAGCGACCGTGCTGGAGGCGACCTACGAGCAGGTCGACTACATCTCCCTG
CACATGTATTTCGAGAATTACGAGAAGAATACGTCCGAATATCTCGCTCTTCCGGCCAAGCTCGACCGCTACATTGGCAC
GGTCGCGGGTATCATCGACTATGTGAAGGCAAAGACCCGCTCAAAGCGGGACGTGAAGATCTCCTTCGATGAGTGGAACG
TCTGGTACCATCAGCGCAAGCAGGACGCCGAGCGCATGCGCGGCTGGGACTGGCCGGAAGCGCCCAGGCTTTTGGAAGAC
ATCTACAATTTCGAGGACGTGCTGCAGGTCGGCTGCATCATCAACACCTTCATCCGCCGGTCGGACGTTGTTCGCATCGC
CTGCATTGCGCAGCTGGTGAACGTTATCGCGCCGATCATGACCGATCCCGGCGGCGGCGCCTGGCGGCAGACGATCTACT
GGCCTTTCATGCTGGCCTCCAGGCACGGCCGCGGCACCGCGCTGCAGCTCGCGGTCGAGGTGCCTACTTATGACGCGGCC
GCGGCCGACAAGGTGCCATGGCTCGACATCGCAGGTGTGCACGATTCGAATGCCGGCACGCTGACCTTCTTCGCCATCAA
CCGGCATGGGGCCGAGACGATAGAGGCCGATGTCGCCCTCGAGCGGTTCGCCGCCAAGTCCATCGAGCATACGATCATCC
GTCATGACGATCTCGGGGCCTGCAACACCAAGGACGCGCCGGACACCGTATCGCCGGTCAAGGGCAACGGGGCAGCGCTC
AGCAGCAAGGGAATGACGCTGAACTTGCCGCCGCACTCCTACTCGATGGTGCGCGTGACGCTCTGA

Upstream 100 bases:

>100_bases
GTGTTAGGCCCTTGACGGGCGGATGAACTCCGCTCTTAATTGATCCATGACCCGGATATAAATCGGATAGTCGGATTTAT
AATCCGCAGAGGGAGGGATC

Downstream 100 bases:

>100_bases
GTTAATATCCGACTATCTGATATATACCGTAAAATCCGTTGCAGGCGGTTTGGTTTGGTGTAGCATTGAAACGTTCAAGG
CGGATCTAACCGCCGTACTC

Product: alpha-L-arabinofuranosidase

Products: NA

Alternate protein names: Arabinosidase [H]

Number of amino acids: Translated: 501; Mature: 501

Protein sequence:

>501_residues
MKARVTANAAYAIADIDKRLYGSFLEHLGRAVYTGIYEPGHPQADAEGMRKDVIELVRALDTPICRYPGGNFVSAYNWED
GIGPKENRPRRLDLAWRTTEPNLVGIHEFADWAEKAGTEMMLAVNLGSRGLDEARAFVEYVNHPGGSYWSDLRATNGRAQ
PWNCRLWCLGNEMDGPWQVGHKSASEYGHLANETAKALRGLDPTVELVVCGSSHSNMPTYPQWEATVLEATYEQVDYISL
HMYFENYEKNTSEYLALPAKLDRYIGTVAGIIDYVKAKTRSKRDVKISFDEWNVWYHQRKQDAERMRGWDWPEAPRLLED
IYNFEDVLQVGCIINTFIRRSDVVRIACIAQLVNVIAPIMTDPGGGAWRQTIYWPFMLASRHGRGTALQLAVEVPTYDAA
AADKVPWLDIAGVHDSNAGTLTFFAINRHGAETIEADVALERFAAKSIEHTIIRHDDLGACNTKDAPDTVSPVKGNGAAL
SSKGMTLNLPPHSYSMVRVTL

Sequences:

>Translated_501_residues
MKARVTANAAYAIADIDKRLYGSFLEHLGRAVYTGIYEPGHPQADAEGMRKDVIELVRALDTPICRYPGGNFVSAYNWED
GIGPKENRPRRLDLAWRTTEPNLVGIHEFADWAEKAGTEMMLAVNLGSRGLDEARAFVEYVNHPGGSYWSDLRATNGRAQ
PWNCRLWCLGNEMDGPWQVGHKSASEYGHLANETAKALRGLDPTVELVVCGSSHSNMPTYPQWEATVLEATYEQVDYISL
HMYFENYEKNTSEYLALPAKLDRYIGTVAGIIDYVKAKTRSKRDVKISFDEWNVWYHQRKQDAERMRGWDWPEAPRLLED
IYNFEDVLQVGCIINTFIRRSDVVRIACIAQLVNVIAPIMTDPGGGAWRQTIYWPFMLASRHGRGTALQLAVEVPTYDAA
AADKVPWLDIAGVHDSNAGTLTFFAINRHGAETIEADVALERFAAKSIEHTIIRHDDLGACNTKDAPDTVSPVKGNGAAL
SSKGMTLNLPPHSYSMVRVTL
>Mature_501_residues
MKARVTANAAYAIADIDKRLYGSFLEHLGRAVYTGIYEPGHPQADAEGMRKDVIELVRALDTPICRYPGGNFVSAYNWED
GIGPKENRPRRLDLAWRTTEPNLVGIHEFADWAEKAGTEMMLAVNLGSRGLDEARAFVEYVNHPGGSYWSDLRATNGRAQ
PWNCRLWCLGNEMDGPWQVGHKSASEYGHLANETAKALRGLDPTVELVVCGSSHSNMPTYPQWEATVLEATYEQVDYISL
HMYFENYEKNTSEYLALPAKLDRYIGTVAGIIDYVKAKTRSKRDVKISFDEWNVWYHQRKQDAERMRGWDWPEAPRLLED
IYNFEDVLQVGCIINTFIRRSDVVRIACIAQLVNVIAPIMTDPGGGAWRQTIYWPFMLASRHGRGTALQLAVEVPTYDAA
AADKVPWLDIAGVHDSNAGTLTFFAINRHGAETIEADVALERFAAKSIEHTIIRHDDLGACNTKDAPDTVSPVKGNGAAL
SSKGMTLNLPPHSYSMVRVTL

Specific function: Unknown

COG id: COG3534

COG function: function code G; Alpha-L-arabinofuranosidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 51 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010720
- InterPro:   IPR017853
- InterPro:   IPR013781 [H]

Pfam domain/function: PF06964 Alpha-L-AF_C [H]

EC number: =3.2.1.55 [H]

Molecular weight: Translated: 56024; Mature: 56024

Theoretical pI: Translated: 6.00; Mature: 6.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKARVTANAAYAIADIDKRLYGSFLEHLGRAVYTGIYEPGHPQADAEGMRKDVIELVRAL
CCCEEECCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
DTPICRYPGGNFVSAYNWEDGIGPKENRPRRLDLAWRTTEPNLVGIHEFADWAEKAGTEM
CCCEEECCCCCEEEEECCCCCCCCCCCCCCEEEEEEECCCCCEEEHHHHHHHHHHCCCEE
MLAVNLGSRGLDEARAFVEYVNHPGGSYWSDLRATNGRAQPWNCRLWCLGNEMDGPWQVG
EEEEECCCCCHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCEEEEEEECCCCCCCHHHC
HKSASEYGHLANETAKALRGLDPTVELVVCGSSHSNMPTYPQWEATVLEATYEQVDYISL
CCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCEEEE
HMYFENYEKNTSEYLALPAKLDRYIGTVAGIIDYVKAKTRSKRDVKISFDEWNVWYHQRK
EEEEHHHCCCCHHEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHH
QDAERMRGWDWPEAPRLLEDIYNFEDVLQVGCIINTFIRRSDVVRIACIAQLVNVIAPIM
HHHHHHCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
TDPGGGAWRQTIYWPFMLASRHGRGTALQLAVEVPTYDAAAADKVPWLDIAGVHDSNAGT
CCCCCCCHHHHEEEHHHEECCCCCCEEEEEEEECCCCCCCCCCCCCCEEEECCCCCCCCE
LTFFAINRHGAETIEADVALERFAAKSIEHTIIRHDDLGACNTKDAPDTVSPVKGNGAAL
EEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCCCCEE
SSKGMTLNLPPHSYSMVRVTL
ECCCCEEECCCCCCEEEEEEC
>Mature Secondary Structure
MKARVTANAAYAIADIDKRLYGSFLEHLGRAVYTGIYEPGHPQADAEGMRKDVIELVRAL
CCCEEECCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
DTPICRYPGGNFVSAYNWEDGIGPKENRPRRLDLAWRTTEPNLVGIHEFADWAEKAGTEM
CCCEEECCCCCEEEEECCCCCCCCCCCCCCEEEEEEECCCCCEEEHHHHHHHHHHCCCEE
MLAVNLGSRGLDEARAFVEYVNHPGGSYWSDLRATNGRAQPWNCRLWCLGNEMDGPWQVG
EEEEECCCCCHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCEEEEEEECCCCCCCHHHC
HKSASEYGHLANETAKALRGLDPTVELVVCGSSHSNMPTYPQWEATVLEATYEQVDYISL
CCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCEEEE
HMYFENYEKNTSEYLALPAKLDRYIGTVAGIIDYVKAKTRSKRDVKISFDEWNVWYHQRK
EEEEHHHCCCCHHEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHH
QDAERMRGWDWPEAPRLLEDIYNFEDVLQVGCIINTFIRRSDVVRIACIAQLVNVIAPIM
HHHHHHCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
TDPGGGAWRQTIYWPFMLASRHGRGTALQLAVEVPTYDAAAADKVPWLDIAGVHDSNAGT
CCCCCCCHHHHEEEHHHEECCCCCCEEEEEEEECCCCCCCCCCCCCCEEEECCCCCCCCE
LTFFAINRHGAETIEADVALERFAAKSIEHTIIRHDDLGACNTKDAPDTVSPVKGNGAAL
EEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCCCCEE
SSKGMTLNLPPHSYSMVRVTL
ECCCCEEECCCCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7887599 [H]