| Definition | Mesorhizobium loti MAFF303099 chromosome, complete genome. |
|---|---|
| Accession | NC_002678 |
| Length | 7,036,071 |
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The map label for this gene is phnL [H]
Identifier: 13472905
GI number: 13472905
Start: 2693374
End: 2694081
Strand: Direct
Name: phnL [H]
Synonym: mlr3349
Alternate gene names: 13472905
Gene position: 2693374-2694081 (Clockwise)
Preceding gene: 13472904
Following gene: 13472906
Centisome position: 38.28
GC content: 65.25
Gene sequence:
>708_bases ATGCCAACCCCGCTCGTTGTTTCCGACGTCGCCAAGAGCTTCACCATGCATCTGCGCGATGGCATCAAACTGCCTGTCGT CGCCGCTGTCTCGTTCTCGATCAAGGCGGGAGAATGCACCGTGCTCGGCGGCCCGTCCGGCGCCGGCAAGAGCTCGATCC TGAAGATGCTTTACGGCAACTATGCCGTCGACGAGGGCCAGATCATCGTCAGGCACGAGGACGGACTGATCGATCTTGCC AATGCCAGCCCGCGCACCGTGCTTGCCGTTCGCCGGCAAACGATCGGCTATGTCAGCCAGTTCCTGCGCACGGTGCCGCG CGTCTCGGCGCTCGACGTCGTCGCCGAACCGCTGGTCGAGCGCGGCGAGGAGCGCGAGGTTGCACGCGGCAAGGCACGCG CGCTGCTGGCGCAGCTTAACCTGCCGGAAAAACTCTGGGCGCTGCCGCCGGCGACCTTCTCCGGCGGCGAGCAGCAGCGC GTCAACATCGCGCGCGGCTTCATCACCGAGCACCCTATCCTGCTGCTCGACGAGCCAACCGCCTCGCTCGACGCCACCAA CCGCGACGTGGTGATAGAACTCATCGCCGCCAAGAAGGCGGCGGGCGTCGCCTTGCTCGGCATCTTCCACGATCATGATG TGCGCGAGGCGGTAGCCGACCGCATCATCGACGTCACCGCTTTTGCTCCAGGAAAACTCGCCGCATGA
Upstream 100 bases:
>100_bases ACGGCCGCGTCGTCGAAAGCGGCCTCACCGACCGCGTGCTCGACGACCCGCGCGCGCCCTATACGCAGCTTCTCGTTTCT TCCATTTTGCAGGTGTAACG
Downstream 100 bases:
>100_bases CCAGGAAATTGTCAGAGACGCCGCTGGTCCACCCGACGGCGGAGGTGCACAATTCGACGCTCGGCCGCTGGACCGAGATC GCCGACCGCAGCCGGGTTTC
Product: ATP-binding component of phosphonate transport, HisP-like nucleotide binding protein (phnL)
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 235; Mature: 234
Protein sequence:
>235_residues MPTPLVVSDVAKSFTMHLRDGIKLPVVAAVSFSIKAGECTVLGGPSGAGKSSILKMLYGNYAVDEGQIIVRHEDGLIDLA NASPRTVLAVRRQTIGYVSQFLRTVPRVSALDVVAEPLVERGEEREVARGKARALLAQLNLPEKLWALPPATFSGGEQQR VNIARGFITEHPILLLDEPTASLDATNRDVVIELIAAKKAAGVALLGIFHDHDVREAVADRIIDVTAFAPGKLAA
Sequences:
>Translated_235_residues MPTPLVVSDVAKSFTMHLRDGIKLPVVAAVSFSIKAGECTVLGGPSGAGKSSILKMLYGNYAVDEGQIIVRHEDGLIDLA NASPRTVLAVRRQTIGYVSQFLRTVPRVSALDVVAEPLVERGEEREVARGKARALLAQLNLPEKLWALPPATFSGGEQQR VNIARGFITEHPILLLDEPTASLDATNRDVVIELIAAKKAAGVALLGIFHDHDVREAVADRIIDVTAFAPGKLAA >Mature_234_residues PTPLVVSDVAKSFTMHLRDGIKLPVVAAVSFSIKAGECTVLGGPSGAGKSSILKMLYGNYAVDEGQIIVRHEDGLIDLAN ASPRTVLAVRRQTIGYVSQFLRTVPRVSALDVVAEPLVERGEEREVARGKARALLAQLNLPEKLWALPPATFSGGEQQRV NIARGFITEHPILLLDEPTASLDATNRDVVIELIAAKKAAGVALLGIFHDHDVREAVADRIIDVTAFAPGKLAA
Specific function: Part of the binding-protein-dependent transport system for alkylphosphonates. Probably responsible for energy coupling to the transport system [H]
COG id: COG4778
COG function: function code P; ABC-type phosphonate transport system, ATPase component
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI31657092, Length=226, Percent_Identity=30.5309734513274, Blast_Score=75, Evalue=4e-14, Organism=Homo sapiens, GI116734710, Length=225, Percent_Identity=25.7777777777778, Blast_Score=70, Evalue=1e-12, Organism=Escherichia coli, GI1790534, Length=216, Percent_Identity=56.4814814814815, Blast_Score=260, Evalue=6e-71, Organism=Escherichia coli, GI1786703, Length=190, Percent_Identity=34.7368421052632, Blast_Score=99, Evalue=2e-22, Organism=Escherichia coli, GI1787029, Length=199, Percent_Identity=34.6733668341709, Blast_Score=99, Evalue=3e-22, Organism=Escherichia coli, GI87081834, Length=197, Percent_Identity=31.9796954314721, Blast_Score=93, Evalue=1e-20, Organism=Escherichia coli, GI1789672, Length=202, Percent_Identity=31.1881188118812, Blast_Score=89, Evalue=3e-19, Organism=Escherichia coli, GI1788225, Length=201, Percent_Identity=31.8407960199005, Blast_Score=88, Evalue=4e-19, Organism=Escherichia coli, GI1787105, Length=210, Percent_Identity=30.4761904761905, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI1789873, Length=185, Percent_Identity=34.0540540540541, Blast_Score=84, Evalue=9e-18, Organism=Escherichia coli, GI1789962, Length=205, Percent_Identity=28.780487804878, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1786872, Length=181, Percent_Identity=32.0441988950276, Blast_Score=81, Evalue=6e-17, Organism=Escherichia coli, GI1787712, Length=197, Percent_Identity=29.9492385786802, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1786698, Length=207, Percent_Identity=29.4685990338164, Blast_Score=78, Evalue=4e-16, Organism=Escherichia coli, GI1787370, Length=201, Percent_Identity=29.8507462686567, Blast_Score=77, Evalue=9e-16, Organism=Escherichia coli, GI1788506, Length=206, Percent_Identity=31.0679611650485, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1789032, Length=205, Percent_Identity=33.1707317073171, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI48995001, Length=200, Percent_Identity=32, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI87081709, Length=202, Percent_Identity=30.6930693069307, Blast_Score=76, Evalue=1e-15, Organism=Escherichia coli, GI1787500, Length=204, Percent_Identity=27.9411764705882, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1790544, Length=233, Percent_Identity=30.0429184549356, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1790467, Length=195, Percent_Identity=29.2307692307692, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1787759, Length=209, Percent_Identity=33.4928229665072, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1786398, Length=215, Percent_Identity=29.7674418604651, Blast_Score=74, Evalue=7e-15, Organism=Escherichia coli, GI145693107, Length=218, Percent_Identity=28.4403669724771, Blast_Score=74, Evalue=8e-15, Organism=Escherichia coli, GI1787758, Length=200, Percent_Identity=28, Blast_Score=74, Evalue=9e-15, Organism=Escherichia coli, GI1788450, Length=201, Percent_Identity=29.3532338308458, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1789991, Length=231, Percent_Identity=26.8398268398268, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1787089, Length=195, Percent_Identity=28.7179487179487, Blast_Score=72, Evalue=3e-14, Organism=Escherichia coli, GI87081791, Length=222, Percent_Identity=29.7297297297297, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1789891, Length=203, Percent_Identity=31.0344827586207, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1788761, Length=223, Percent_Identity=29.5964125560538, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI48994997, Length=200, Percent_Identity=30.5, Blast_Score=71, Evalue=6e-14, Organism=Escherichia coli, GI1786253, Length=205, Percent_Identity=28.780487804878, Blast_Score=70, Evalue=9e-14, Organism=Escherichia coli, GI1788644, Length=230, Percent_Identity=28.2608695652174, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1789593, Length=198, Percent_Identity=31.8181818181818, Blast_Score=68, Evalue=7e-13, Organism=Escherichia coli, GI87082267, Length=222, Percent_Identity=28.8288288288288, Blast_Score=68, Evalue=7e-13, Organism=Escherichia coli, GI1786563, Length=199, Percent_Identity=32.6633165829146, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI1787164, Length=222, Percent_Identity=31.0810810810811, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI1787792, Length=204, Percent_Identity=29.4117647058824, Blast_Score=64, Evalue=6e-12, Organism=Escherichia coli, GI1790190, Length=215, Percent_Identity=27.906976744186, Blast_Score=64, Evalue=7e-12, Organism=Escherichia coli, GI1788210, Length=215, Percent_Identity=29.3023255813954, Blast_Score=64, Evalue=8e-12, Organism=Escherichia coli, GI1787112, Length=196, Percent_Identity=27.0408163265306, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI1788897, Length=244, Percent_Identity=23.7704918032787, Blast_Score=62, Evalue=4e-11, Organism=Caenorhabditis elegans, GI212646699, Length=188, Percent_Identity=31.3829787234043, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI71992290, Length=206, Percent_Identity=33.0097087378641, Blast_Score=71, Evalue=4e-13, Organism=Caenorhabditis elegans, GI25146777, Length=196, Percent_Identity=32.1428571428571, Blast_Score=69, Evalue=2e-12, Organism=Saccharomyces cerevisiae, GI6323217, Length=214, Percent_Identity=31.3084112149533, Blast_Score=79, Evalue=6e-16, Organism=Saccharomyces cerevisiae, GI6322640, Length=177, Percent_Identity=32.7683615819209, Blast_Score=70, Evalue=2e-13, Organism=Drosophila melanogaster, GI24666092, Length=210, Percent_Identity=29.0476190476191, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI221512771, Length=219, Percent_Identity=26.027397260274, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI85726357, Length=183, Percent_Identity=29.5081967213115, Blast_Score=67, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR012701 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 25098; Mature: 24967
Theoretical pI: Translated: 7.08; Mature: 7.08
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPTPLVVSDVAKSFTMHLRDGIKLPVVAAVSFSIKAGECTVLGGPSGAGKSSILKMLYGN CCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCC YAVDEGQIIVRHEDGLIDLANASPRTVLAVRRQTIGYVSQFLRTVPRVSALDVVAEPLVE EEECCCEEEEEECCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH RGEEREVARGKARALLAQLNLPEKLWALPPATFSGGEQQRVNIARGFITEHPILLLDEPT CCCHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCC ASLDATNRDVVIELIAAKKAAGVALLGIFHDHDVREAVADRIIDVTAFAPGKLAA CCCCCCCCCEEEEEEHHHCCCCEEEEEEECCCHHHHHHHHHHEEEEEECCCCCCC >Mature Secondary Structure PTPLVVSDVAKSFTMHLRDGIKLPVVAAVSFSIKAGECTVLGGPSGAGKSSILKMLYGN CCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCC YAVDEGQIIVRHEDGLIDLANASPRTVLAVRRQTIGYVSQFLRTVPRVSALDVVAEPLVE EEECCCEEEEEECCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH RGEEREVARGKARALLAQLNLPEKLWALPPATFSGGEQQRVNIARGFITEHPILLLDEPT CCCHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCC ASLDATNRDVVIELIAAKKAAGVALLGIFHDHDVREAVADRIIDVTAFAPGKLAA CCCCCCCCCEEEEEEHHHCCCCEEEEEEECCCHHHHHHHHHHEEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2155230; 1840580; 7610040; 9278503 [H]