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The map label for this gene is phnF [C]

Identifier: 13472898

GI number: 13472898

Start: 2687952

End: 2688701

Strand: Reverse

Name: phnF [C]

Synonym: mll3341

Alternate gene names: 13472898

Gene position: 2688701-2687952 (Counterclockwise)

Preceding gene: 13472913

Following gene: 13472891

Centisome position: 38.21

GC content: 67.6

Gene sequence:

>750_bases
ATGATCGGGCAACAGGAAGCCGACAGCATCGAGCGGCGCAGCGGTGTCTCCCTGTGGCGGCAGATCGCCGACAGAATCCT
GCAGGCGATCGCCACTGGCGATTTCGCCGAGAATGCCGCGCTGCCGCCGGAGGTGGCGCTGGCCGAGCGCTATGGCGTCA
ATCGCCACACGGTGCGCAGCGCCATATCCGCGCTTGTGCAGGAAGGGGTGCTGCGGGCCGAGCAGGGGCGGGGCACCTTC
GTCCTGTCGCGCAAGCGGTTGTCCTATCCGATCGGCGCGCGCACACGCTTTTCGACCGGCCTGCAAGGGCAGACCTCGGA
ACGGCATATCGTGCTGCTCTCCTCGTCGGTCGAGCCGGCCAGCCAGCGCGTCGCCGAGGGGCTTGGCCTGACCAGGGGCG
CCGAGGTGATCCGGCTGGAGACACGCGGTGAGGCCGACGGGCGGCCTGTGTCGCGCGCTGCCGGCTGGTTCGATGCCAGG
CGCTTTGCCGGCATCGACAAGGCGATGGCTGAGACTGGCTCGATCACTGCATCGCTGGCCCGCTTCGGTATAGACGATTA
TCTCAGGCAATCGACCGTGCTGTCGGCGCGCCATGCCGATGCGGCCGATCTCGCCGACCTCGACCTGCAGCCAGGCGCCA
TCGTGCTGGTCACGGTGGCCGTCAACATCACGCCGGACGGCCAGCCGATCCAGTTTTCGGAGTCGCGCTTTCCGGCGGAA
CGGGTGGAGTTGAAATTGTCGGCGCTGTGA

Upstream 100 bases:

>100_bases
AAATTTGTCTATTGATATAGACAATTATACAAATTATACATATTACCTAACGCGAGTCCATGACGGGTGGATGACAGGGG
CGGAAAGCCGGGGGCAATTC

Downstream 100 bases:

>100_bases
GCCGGATTCTGCCGACTATCCGATCTCGATCACGGCCTTGATCAGGCCGGATTTCTCGTGCGCCCAGCGGGCGAGATCGC
TCGGCGTATCGGCAAGCGTG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 249; Mature: 249

Protein sequence:

>249_residues
MIGQQEADSIERRSGVSLWRQIADRILQAIATGDFAENAALPPEVALAERYGVNRHTVRSAISALVQEGVLRAEQGRGTF
VLSRKRLSYPIGARTRFSTGLQGQTSERHIVLLSSSVEPASQRVAEGLGLTRGAEVIRLETRGEADGRPVSRAAGWFDAR
RFAGIDKAMAETGSITASLARFGIDDYLRQSTVLSARHADAADLADLDLQPGAIVLVTVAVNITPDGQPIQFSESRFPAE
RVELKLSAL

Sequences:

>Translated_249_residues
MIGQQEADSIERRSGVSLWRQIADRILQAIATGDFAENAALPPEVALAERYGVNRHTVRSAISALVQEGVLRAEQGRGTF
VLSRKRLSYPIGARTRFSTGLQGQTSERHIVLLSSSVEPASQRVAEGLGLTRGAEVIRLETRGEADGRPVSRAAGWFDAR
RFAGIDKAMAETGSITASLARFGIDDYLRQSTVLSARHADAADLADLDLQPGAIVLVTVAVNITPDGQPIQFSESRFPAE
RVELKLSAL
>Mature_249_residues
MIGQQEADSIERRSGVSLWRQIADRILQAIATGDFAENAALPPEVALAERYGVNRHTVRSAISALVQEGVLRAEQGRGTF
VLSRKRLSYPIGARTRFSTGLQGQTSERHIVLLSSSVEPASQRVAEGLGLTRGAEVIRLETRGEADGRPVSRAAGWFDAR
RFAGIDKAMAETGSITASLARFGIDDYLRQSTVLSARHADAADLADLDLQPGAIVLVTVAVNITPDGQPIQFSESRFPAE
RVELKLSAL

Specific function: Belongs To An Operon Involved In Alkylphosphonate Uptake And C-P Lyase. Exact Function Not Known. By Similarity Could Be A Transcriptional Regulator. [C]

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790540, Length=240, Percent_Identity=32.0833333333333, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1786950, Length=157, Percent_Identity=31.8471337579618, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI87082252, Length=171, Percent_Identity=31.5789473684211, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012702
- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 26862; Mature: 26862

Theoretical pI: Translated: 7.79; Mature: 7.79

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIGQQEADSIERRSGVSLWRQIADRILQAIATGDFAENAALPPEVALAERYGVNRHTVRS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHH
AISALVQEGVLRAEQGRGTFVLSRKRLSYPIGARTRFSTGLQGQTSERHIVLLSSSVEPA
HHHHHHHHHHHHHCCCCCEEEEECCHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHH
SQRVAEGLGLTRGAEVIRLETRGEADGRPVSRAAGWFDARRFAGIDKAMAETGSITASLA
HHHHHHHCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
RFGIDDYLRQSTVLSARHADAADLADLDLQPGAIVLVTVAVNITPDGQPIQFSESRFPAE
HHCHHHHHHHHHHHHHCCCCCHHHHCCCCCCCEEEEEEEEEEECCCCCCEEECCCCCCHH
RVELKLSAL
HHEEEEECC
>Mature Secondary Structure
MIGQQEADSIERRSGVSLWRQIADRILQAIATGDFAENAALPPEVALAERYGVNRHTVRS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHH
AISALVQEGVLRAEQGRGTFVLSRKRLSYPIGARTRFSTGLQGQTSERHIVLLSSSVEPA
HHHHHHHHHHHHHCCCCCEEEEECCHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHH
SQRVAEGLGLTRGAEVIRLETRGEADGRPVSRAAGWFDARRFAGIDKAMAETGSITASLA
HHHHHHHCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
RFGIDDYLRQSTVLSARHADAADLADLDLQPGAIVLVTVAVNITPDGQPIQFSESRFPAE
HHCHHHHHHHHHHHHHCCCCCHHHHCCCCCCCEEEEEEEEEEECCCCCCEEECCCCCCHH
RVELKLSAL
HHEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481431; 9889346 [H]