| Definition | Mesorhizobium loti MAFF303099 chromosome, complete genome. |
|---|---|
| Accession | NC_002678 |
| Length | 7,036,071 |
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The map label for this gene is engD [H]
Identifier: 13472408
GI number: 13472408
Start: 2167531
End: 2168634
Strand: Direct
Name: engD [H]
Synonym: mlr2695
Alternate gene names: 13472408
Gene position: 2167531-2168634 (Clockwise)
Preceding gene: 13472407
Following gene: 13472409
Centisome position: 30.81
GC content: 64.67
Gene sequence:
>1104_bases ATGGGTTTCAAATGCGGCATCGTTGGCTTGCCCAACGTCGGCAAGTCGACGCTCTTCAACGCGCTGACCAGGACGGCGGC GGCGCAGGCCGCCAACTATCCGTTCTGCACCATCGAACCGAACACCGGCGAGGTGGCGGTGCCCGACCCGCGCTTGCAGA AGATCGCGGCCATCGGCAAGTCGAAGGAGATCATCCCGACCCGCATCTCCTTCGTCGACATCGCCGGCCTGGTGCGCGGC GCCTCGAAGGGCGAAGGGCTAGGCAACCAGTTCCTCGCCAACATCCGCGAGGTCGACGCCATCGTGCACGTGCTGCGCTG CTTCGAGGATGACGACATTACCCATGTCGAGGGCCGCATCGACCCCGTCGCCGACGCCGAGACGGTCGAGACCGAGCTGA TGCTCGCTGACCTCGACAGCCTGGAGCGCCGCATCGTCCAGATCCGCAAGCGCGCCGGCAGCAAGGACAAGGAAGCCACC ACTGTCCTGCCGATGATGGAGGCCGCGCTCGAATTGCTGCAGGCCGGCAAGCCGACCCGCGTCCTGCTCAAGGGCATCTC GGCCGAGGATCTGCGCATCCTGCAGGGCTTGAACTTGCTGACCTCGCACCCCGTGCTCTATGTCTGCAACGTTGGCGAAG CCGACGCCGCGACCGGCAACGAGCACACCAGGGCCGTGGAAAAGATGGCCGCTGCTCAGGGCGCCGGCACCGTGGTGATC TCGGCCGCGATCGAAGCCGAAGTCGCCCAGCTCTCCGACGAGGAAGAGATGGAATTCCTGTCCTCGCTCGGCCTCGACGA GCCGGGGCTCAACAAGGTCATCCGCGCCGGTTATGAGCTTTTGCATCTTATCACCTATTTCACCGTCGGGCCGAAGGAGA CGCGCGCCTGGACCATCCACAAGGGCGACAAGGCCCCGCAGGCGGCCGGCGTCATCCACACCGACTTCGAACGCGGCTTC ATCCGCGCCCAGACCATCGCCTATAACGACTTCGTCACGCTGGGCGGTGAAGTGGCGGCCAAGGAAGCCGGCAAGGCGCG CGACGAAGGCAAGGAATATGTCGTCCAGGACGGCGACATCATGCTGTTCAAGTTCAACACCTGA
Upstream 100 bases:
>100_bases ACTGAGCGGGCCCGCATGCGGCCCTACAGGGCTTGACGTAGATCACCCCTATCGCCCATAGCCCTCATCAAATTTCGCTT TTCCGACAGGACTGGACAAA
Downstream 100 bases:
>100_bases CGCTCCAAGCAGCAGACGATGTCCAGCCGTCCTGCGGAAACCGGCCTGCCGAACGGGTTGCGCCAGTTGGTTTCCGGCTA TCGCTGGCATCGGCAGACCA
Product: GTP-dependent nucleic acid-binding protein EngD
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 367; Mature: 366
Protein sequence:
>367_residues MGFKCGIVGLPNVGKSTLFNALTRTAAAQAANYPFCTIEPNTGEVAVPDPRLQKIAAIGKSKEIIPTRISFVDIAGLVRG ASKGEGLGNQFLANIREVDAIVHVLRCFEDDDITHVEGRIDPVADAETVETELMLADLDSLERRIVQIRKRAGSKDKEAT TVLPMMEAALELLQAGKPTRVLLKGISAEDLRILQGLNLLTSHPVLYVCNVGEADAATGNEHTRAVEKMAAAQGAGTVVI SAAIEAEVAQLSDEEEMEFLSSLGLDEPGLNKVIRAGYELLHLITYFTVGPKETRAWTIHKGDKAPQAAGVIHTDFERGF IRAQTIAYNDFVTLGGEVAAKEAGKARDEGKEYVVQDGDIMLFKFNT
Sequences:
>Translated_367_residues MGFKCGIVGLPNVGKSTLFNALTRTAAAQAANYPFCTIEPNTGEVAVPDPRLQKIAAIGKSKEIIPTRISFVDIAGLVRG ASKGEGLGNQFLANIREVDAIVHVLRCFEDDDITHVEGRIDPVADAETVETELMLADLDSLERRIVQIRKRAGSKDKEAT TVLPMMEAALELLQAGKPTRVLLKGISAEDLRILQGLNLLTSHPVLYVCNVGEADAATGNEHTRAVEKMAAAQGAGTVVI SAAIEAEVAQLSDEEEMEFLSSLGLDEPGLNKVIRAGYELLHLITYFTVGPKETRAWTIHKGDKAPQAAGVIHTDFERGF IRAQTIAYNDFVTLGGEVAAKEAGKARDEGKEYVVQDGDIMLFKFNT >Mature_366_residues GFKCGIVGLPNVGKSTLFNALTRTAAAQAANYPFCTIEPNTGEVAVPDPRLQKIAAIGKSKEIIPTRISFVDIAGLVRGA SKGEGLGNQFLANIREVDAIVHVLRCFEDDDITHVEGRIDPVADAETVETELMLADLDSLERRIVQIRKRAGSKDKEATT VLPMMEAALELLQAGKPTRVLLKGISAEDLRILQGLNLLTSHPVLYVCNVGEADAATGNEHTRAVEKMAAAQGAGTVVIS AAIEAEVAQLSDEEEMEFLSSLGLDEPGLNKVIRAGYELLHLITYFTVGPKETRAWTIHKGDKAPQAAGVIHTDFERGFI RAQTIAYNDFVTLGGEVAAKEAGKARDEGKEYVVQDGDIMLFKFNT
Specific function: GTP-dependent nucleic acid-binding protein which may act as a translation factor [H]
COG id: COG0012
COG function: function code J; Predicted GTPase, probable translation factor
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]
Homologues:
Organism=Homo sapiens, GI58761500, Length=374, Percent_Identity=44.3850267379679, Blast_Score=302, Evalue=3e-82, Organism=Homo sapiens, GI58761502, Length=233, Percent_Identity=39.0557939914163, Blast_Score=157, Evalue=1e-38, Organism=Escherichia coli, GI1787454, Length=366, Percent_Identity=58.4699453551913, Blast_Score=428, Evalue=1e-121, Organism=Escherichia coli, GI1789574, Length=130, Percent_Identity=33.0769230769231, Blast_Score=66, Evalue=4e-12, Organism=Caenorhabditis elegans, GI17509631, Length=373, Percent_Identity=41.2868632707775, Blast_Score=283, Evalue=1e-76, Organism=Saccharomyces cerevisiae, GI6319499, Length=375, Percent_Identity=40, Blast_Score=268, Evalue=9e-73, Organism=Saccharomyces cerevisiae, GI6321773, Length=379, Percent_Identity=36.4116094986807, Blast_Score=227, Evalue=3e-60, Organism=Saccharomyces cerevisiae, GI6321649, Length=296, Percent_Identity=32.0945945945946, Blast_Score=91, Evalue=3e-19, Organism=Drosophila melanogaster, GI24640873, Length=373, Percent_Identity=41.5549597855228, Blast_Score=286, Evalue=2e-77, Organism=Drosophila melanogaster, GI24640877, Length=373, Percent_Identity=41.5549597855228, Blast_Score=286, Evalue=2e-77, Organism=Drosophila melanogaster, GI24640875, Length=373, Percent_Identity=41.5549597855228, Blast_Score=286, Evalue=2e-77, Organism=Drosophila melanogaster, GI24640879, Length=333, Percent_Identity=39.039039039039, Blast_Score=232, Evalue=3e-61,
Paralogues:
None
Copy number: 120 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012675 - InterPro: IPR004396 - InterPro: IPR013029 - InterPro: IPR006073 - InterPro: IPR002917 - InterPro: IPR012676 - InterPro: IPR023192 [H]
Pfam domain/function: PF01926 MMR_HSR1; PF06071 YchF-GTPase_C [H]
EC number: NA
Molecular weight: Translated: 39556; Mature: 39424
Theoretical pI: Translated: 4.84; Mature: 4.84
Prosite motif: PS00443 GATASE_TYPE_II
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGFKCGIVGLPNVGKSTLFNALTRTAAAQAANYPFCTIEPNTGEVAVPDPRLQKIAAIGK CCEEECEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCEECCCHHHHHHHHHCC SKEIIPTRISFVDIAGLVRGASKGEGLGNQFLANIREVDAIVHVLRCFEDDDITHVEGRI CCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCC DPVADAETVETELMLADLDSLERRIVQIRKRAGSKDKEATTVLPMMEAALELLQAGKPTR CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCE VLLKGISAEDLRILQGLNLLTSHPVLYVCNVGEADAATGNEHTRAVEKMAAAQGAGTVVI EHHCCCCHHHHHHHHCCHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCEEEE SAAIEAEVAQLSDEEEMEFLSSLGLDEPGLNKVIRAGYELLHLITYFTVGPKETRAWTIH EHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE KGDKAPQAAGVIHTDFERGFIRAQTIAYNDFVTLGGEVAAKEAGKARDEGKEYVVQDGDI CCCCCCCCCCCEEECCCCCEEEEEEEEECCCEECCCHHHHHHHCCCHHCCCEEEEECCCE MLFKFNT EEEEECC >Mature Secondary Structure GFKCGIVGLPNVGKSTLFNALTRTAAAQAANYPFCTIEPNTGEVAVPDPRLQKIAAIGK CEEECEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCEECCCHHHHHHHHHCC SKEIIPTRISFVDIAGLVRGASKGEGLGNQFLANIREVDAIVHVLRCFEDDDITHVEGRI CCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCC DPVADAETVETELMLADLDSLERRIVQIRKRAGSKDKEATTVLPMMEAALELLQAGKPTR CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCE VLLKGISAEDLRILQGLNLLTSHPVLYVCNVGEADAATGNEHTRAVEKMAAAQGAGTVVI EHHCCCCHHHHHHHHCCHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCEEEE SAAIEAEVAQLSDEEEMEFLSSLGLDEPGLNKVIRAGYELLHLITYFTVGPKETRAWTIH EHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE KGDKAPQAAGVIHTDFERGFIRAQTIAYNDFVTLGGEVAAKEAGKARDEGKEYVVQDGDI CCCCCCCCCCCEEECCCCCEEEEEEEEECCCEECCCHHHHHHHCCCHHCCCEEEEECCCE MLFKFNT EEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA