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The map label for this gene is rbsC [H]

Identifier: 13471645

GI number: 13471645

Start: 1404757

End: 1405707

Strand: Reverse

Name: rbsC [H]

Synonym: mll1678

Alternate gene names: 13471645

Gene position: 1405707-1404757 (Counterclockwise)

Preceding gene: 13471646

Following gene: 13471644

Centisome position: 19.98

GC content: 66.25

Gene sequence:

>951_bases
ATGCCGAAATTCATCCGCCGCGCCGATCCGGCGGTGCTGACCGCATTCGCCTGCATCGTGCTGTTGCTGTTCGTCGGCAG
CCTCTATTCCAGAAGCTTCCTGTCGCCTGAATATCTGTTGCAGCAATTGAAGGTGGCCTCGTTCCTCGGGGTCATCGCCA
CCGGCATGATGCTGGTTATCCTGCTCGGCCAGATCGACCTGTCGGTGCCGTGGTCGGTGGCGGCGGGCGCGATGATGGCC
TGCGCGGCGGCCGCCTACGGTCCGCTTGGGGTGGCGCTGGCCATACCGTTCGGCATCTTCTGCGGCGTGCTGATCGGCGT
CGTCAACGGCATCGGCGTCGCCTATCTGCGCATTCCCTCGATGATCATCACGCTTGCCACCAACGCCGTCGCACAGGGGC
TGATGGTGGTCTACACCGGCGGCTTCTCGCCTCAGGATTCGGCGACCGGCGCGATGCGCTTCCTCGCCACCGGCTTTGCC
ATTCCGGGCGTGCCCAACGCCGTCATCATCTGGGCGCTGATCGGGGCCGCGATGGTCTTCGTGCTGACCCGCACCGGCTT
TGGCCGGACCGTCTACGGCATCGGCAACCGCGAGCGTGCTGCCTATCTCTCCGGCATCGACACGAGGCGCGTGGTGATGA
TTGCCTTCGCCGTCTCCGGCGGGCTCTCGGCCTTTGGCGGCGTGCTGCTGGCCGGCTATGCCTCGAAGGCGGCGCAGTCG
ATGGGTGATGCGTATTTGCTGCCGTCGATCGCCGCGGTGGTGCTCGGCGGCACCTCGATCCTCGGCGGGCGCGGGTCCTA
TCTCGGCACCGTCGCCGGCGTCATCCTGATCACGCTTCTGCAGTCCATCCTGTCGGTCATGCAGATGCCGGAGGCGGGGC
GGCAGATCATCTATGGCGTCGTCATTGTCGCCATGCTGCTGCTCTACGGCCGCGCGCCGGCAAGCCGCTAG

Upstream 100 bases:

>100_bases
TGATCGCGGTCAGCCTCGGCGCCTTCGCCCTGTTTCGGGTCCGCAACCGGCTGGAGTGGTTCCTGTGAGCGAAACGACGC
TTGGCGGCATTGCCGGCCGC

Downstream 100 bases:

>100_bases
AGCCGAATGATTTCAGGTCGGATCGACCTGAAATCTGAATCCGCCTCTAAATCAAGGAGATAGAGCATGATGTCGTCCGA
AAACCGCTTCACACTTTTCG

Product: permease protein of ribose ABC transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 316; Mature: 315

Protein sequence:

>316_residues
MPKFIRRADPAVLTAFACIVLLLFVGSLYSRSFLSPEYLLQQLKVASFLGVIATGMMLVILLGQIDLSVPWSVAAGAMMA
CAAAAYGPLGVALAIPFGIFCGVLIGVVNGIGVAYLRIPSMIITLATNAVAQGLMVVYTGGFSPQDSATGAMRFLATGFA
IPGVPNAVIIWALIGAAMVFVLTRTGFGRTVYGIGNRERAAYLSGIDTRRVVMIAFAVSGGLSAFGGVLLAGYASKAAQS
MGDAYLLPSIAAVVLGGTSILGGRGSYLGTVAGVILITLLQSILSVMQMPEAGRQIIYGVVIVAMLLLYGRAPASR

Sequences:

>Translated_316_residues
MPKFIRRADPAVLTAFACIVLLLFVGSLYSRSFLSPEYLLQQLKVASFLGVIATGMMLVILLGQIDLSVPWSVAAGAMMA
CAAAAYGPLGVALAIPFGIFCGVLIGVVNGIGVAYLRIPSMIITLATNAVAQGLMVVYTGGFSPQDSATGAMRFLATGFA
IPGVPNAVIIWALIGAAMVFVLTRTGFGRTVYGIGNRERAAYLSGIDTRRVVMIAFAVSGGLSAFGGVLLAGYASKAAQS
MGDAYLLPSIAAVVLGGTSILGGRGSYLGTVAGVILITLLQSILSVMQMPEAGRQIIYGVVIVAMLLLYGRAPASR
>Mature_315_residues
PKFIRRADPAVLTAFACIVLLLFVGSLYSRSFLSPEYLLQQLKVASFLGVIATGMMLVILLGQIDLSVPWSVAAGAMMAC
AAAAYGPLGVALAIPFGIFCGVLIGVVNGIGVAYLRIPSMIITLATNAVAQGLMVVYTGGFSPQDSATGAMRFLATGFAI
PGVPNAVIIWALIGAAMVFVLTRTGFGRTVYGIGNRERAAYLSGIDTRRVVMIAFAVSGGLSAFGGVLLAGYASKAAQSM
GDAYLLPSIAAVVLGGTSILGGRGSYLGTVAGVILITLLQSILSVMQMPEAGRQIIYGVVIVAMLLLYGRAPASR

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788896, Length=316, Percent_Identity=31.3291139240506, Blast_Score=110, Evalue=9e-26,
Organism=Escherichia coli, GI1790191, Length=303, Percent_Identity=33.003300330033, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1790524, Length=297, Percent_Identity=27.9461279461279, Blast_Score=91, Evalue=7e-20,
Organism=Escherichia coli, GI145693152, Length=274, Percent_Identity=29.5620437956204, Blast_Score=91, Evalue=8e-20,
Organism=Escherichia coli, GI87082395, Length=290, Percent_Identity=32.4137931034483, Blast_Score=88, Evalue=9e-19,
Organism=Escherichia coli, GI1787793, Length=316, Percent_Identity=29.746835443038, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1789992, Length=125, Percent_Identity=37.6, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1787794, Length=201, Percent_Identity=31.8407960199005, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788471, Length=156, Percent_Identity=34.6153846153846, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI145693214, Length=261, Percent_Identity=33.7164750957854, Blast_Score=72, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 32583; Mature: 32451

Theoretical pI: Translated: 10.04; Mature: 10.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKFIRRADPAVLTAFACIVLLLFVGSLYSRSFLSPEYLLQQLKVASFLGVIATGMMLVI
CCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
LLGQIDLSVPWSVAAGAMMACAAAAYGPLGVALAIPFGIFCGVLIGVVNGIGVAYLRIPS
HHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MIITLATNAVAQGLMVVYTGGFSPQDSATGAMRFLATGFAIPGVPNAVIIWALIGAAMVF
HHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
VLTRTGFGRTVYGIGNRERAAYLSGIDTRRVVMIAFAVSGGLSAFGGVLLAGYASKAAQS
HHHHCCCCCEEEECCCCHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
MGDAYLLPSIAAVVLGGTSILGGRGSYLGTVAGVILITLLQSILSVMQMPEAGRQIIYGV
CCCHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
VIVAMLLLYGRAPASR
HHHHHHHHHCCCCCCC
>Mature Secondary Structure 
PKFIRRADPAVLTAFACIVLLLFVGSLYSRSFLSPEYLLQQLKVASFLGVIATGMMLVI
CCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
LLGQIDLSVPWSVAAGAMMACAAAAYGPLGVALAIPFGIFCGVLIGVVNGIGVAYLRIPS
HHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MIITLATNAVAQGLMVVYTGGFSPQDSATGAMRFLATGFAIPGVPNAVIIWALIGAAMVF
HHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
VLTRTGFGRTVYGIGNRERAAYLSGIDTRRVVMIAFAVSGGLSAFGGVLLAGYASKAAQS
HHHHCCCCCEEEECCCCHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
MGDAYLLPSIAAVVLGGTSILGGRGSYLGTVAGVILITLLQSILSVMQMPEAGRQIIYGV
CCCHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
VIVAMLLLYGRAPASR
HHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]