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The map label for this gene is rbsC [H]

Identifier: 13471646

GI number: 13471646

Start: 1405740

End: 1406720

Strand: Reverse

Name: rbsC [H]

Synonym: mll1679

Alternate gene names: 13471646

Gene position: 1406720-1405740 (Counterclockwise)

Preceding gene: 13471647

Following gene: 13471645

Centisome position: 19.99

GC content: 65.95

Gene sequence:

>981_bases
GTGAAGGATTGGCGCTACTGGCTGGCGGAGCAGCGCGGAACGCTGCTGGCGCTCGGCATCTTCATCGTCATGTTCATCAT
CTACACCTCGAACCACCCGGCCGGCTTCACCGCCAATGTGGTGCAGACGGCGGCGAACAAGGGCGTGCTGCTCGCCTTCG
TCGCCATGGCGCAGACGCTGGTGGTGATCACCGCCGGCATCGACCTGTCCGTCGGCATGATCTTTCTCCTGACCAACTGC
CTGGCCTCCTGGCTGGTGGTGGGCACACCCATGCAGACGGCGCTCGGCGTCATCGCCGTGCTGGCGGCCGGTCTTCTGTG
CGGCGCCATCAACGGCGCCATCGTCATCTACGGCCGGCTGCAGCCGATCGTCGCCACCATCGCCACCGGGGCCGTTTATT
ATGGCATCGGCCTTTTGTTGCGGCCCTTCCCGGGCGGTTCGGTCAATGAGGATCTGGCCGATGCGATGACCGGACGCGTC
TTCGACTTGGTGCCGGCGAGCCTCGTCGTGCTGTTCGCCATCGTGCTGTTGATCTGGGTGCCGTTCAGCCGCTCGGTGCT
TGGCCGCGCGGCCTACGCGGCGGGATCGTCGGAGACGGCGGCCTATATGTCGGGCGTTCCGATCAGGCGCGGCAAGTTCG
CCGCCTACACGCTGGCCGGACTGCTGGCGGCGATCGGCGGGCTGTTCCTGACCTTCTTCACCTATACGGGTGACGCTGCC
TATGCCAGCGGCAACGCCTACACGCTGTTCTCGATCGCCGCCGTGGTGCTGGGCGGCGTCTCGCTGTTCGGCGGCAAGGG
CAGCGCCATCGGCGCCATCTTCGGCGCGCTGGCCTTCCGCACCATTGGCGATCTGTTGTTCGTGTTCGATTTCGATCCGC
TCTGGCAGCCGCTGTTCCAGGGGGTTATCCTGCTGATCGCGGTCAGCCTCGGCGCCTTCGCCCTGTTTCGGGTCCGCAAC
CGGCTGGAGTGGTTCCTGTGA

Upstream 100 bases:

>100_bases
AGCGCGAACTGGTCGGCTCCGAGATCACCGAGCGGGCGCTGATAGCGAGCGCGCTCAACATCCATGGCGAGGAGAGCCCG
GTGGGCCTGGGAGCAAGTGC

Downstream 100 bases:

>100_bases
GCGAAACGACGCTTGGCGGCATTGCCGGCCGCATGCCGAAATTCATCCGCCGCGCCGATCCGGCGGTGCTGACCGCATTC
GCCTGCATCGTGCTGTTGCT

Product: permease protein of ribose ABC transporter

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 326; Mature: 326

Protein sequence:

>326_residues
MKDWRYWLAEQRGTLLALGIFIVMFIIYTSNHPAGFTANVVQTAANKGVLLAFVAMAQTLVVITAGIDLSVGMIFLLTNC
LASWLVVGTPMQTALGVIAVLAAGLLCGAINGAIVIYGRLQPIVATIATGAVYYGIGLLLRPFPGGSVNEDLADAMTGRV
FDLVPASLVVLFAIVLLIWVPFSRSVLGRAAYAAGSSETAAYMSGVPIRRGKFAAYTLAGLLAAIGGLFLTFFTYTGDAA
YASGNAYTLFSIAAVVLGGVSLFGGKGSAIGAIFGALAFRTIGDLLFVFDFDPLWQPLFQGVILLIAVSLGAFALFRVRN
RLEWFL

Sequences:

>Translated_326_residues
MKDWRYWLAEQRGTLLALGIFIVMFIIYTSNHPAGFTANVVQTAANKGVLLAFVAMAQTLVVITAGIDLSVGMIFLLTNC
LASWLVVGTPMQTALGVIAVLAAGLLCGAINGAIVIYGRLQPIVATIATGAVYYGIGLLLRPFPGGSVNEDLADAMTGRV
FDLVPASLVVLFAIVLLIWVPFSRSVLGRAAYAAGSSETAAYMSGVPIRRGKFAAYTLAGLLAAIGGLFLTFFTYTGDAA
YASGNAYTLFSIAAVVLGGVSLFGGKGSAIGAIFGALAFRTIGDLLFVFDFDPLWQPLFQGVILLIAVSLGAFALFRVRN
RLEWFL
>Mature_326_residues
MKDWRYWLAEQRGTLLALGIFIVMFIIYTSNHPAGFTANVVQTAANKGVLLAFVAMAQTLVVITAGIDLSVGMIFLLTNC
LASWLVVGTPMQTALGVIAVLAAGLLCGAINGAIVIYGRLQPIVATIATGAVYYGIGLLLRPFPGGSVNEDLADAMTGRV
FDLVPASLVVLFAIVLLIWVPFSRSVLGRAAYAAGSSETAAYMSGVPIRRGKFAAYTLAGLLAAIGGLFLTFFTYTGDAA
YASGNAYTLFSIAAVVLGGVSLFGGKGSAIGAIFGALAFRTIGDLLFVFDFDPLWQPLFQGVILLIAVSLGAFALFRVRN
RLEWFL

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=311, Percent_Identity=32.7974276527331, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1788896, Length=300, Percent_Identity=32.6666666666667, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1790524, Length=319, Percent_Identity=27.5862068965517, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1789992, Length=126, Percent_Identity=38.8888888888889, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1787794, Length=265, Percent_Identity=29.0566037735849, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI145693152, Length=309, Percent_Identity=28.1553398058252, Blast_Score=76, Evalue=4e-15,
Organism=Escherichia coli, GI87082395, Length=305, Percent_Identity=23.9344262295082, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI145693214, Length=250, Percent_Identity=30.4, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1788471, Length=278, Percent_Identity=30.5755395683453, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI1787793, Length=273, Percent_Identity=30.7692307692308, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 34345; Mature: 34345

Theoretical pI: Translated: 9.25; Mature: 9.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDWRYWLAEQRGTLLALGIFIVMFIIYTSNHPAGFTANVVQTAANKGVLLAFVAMAQTL
CCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHH
VVITAGIDLSVGMIFLLTNCLASWLVVGTPMQTALGVIAVLAAGLLCGAINGAIVIYGRL
HHHEECCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECH
QPIVATIATGAVYYGIGLLLRPFPGGSVNEDLADAMTGRVFDLVPASLVVLFAIVLLIWV
HHHHHHHHHHHHHHHHHHHEECCCCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHC
PFSRSVLGRAAYAAGSSETAAYMSGVPIRRGKFAAYTLAGLLAAIGGLFLTFFTYTGDAA
CCCHHHHHHHHHCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCE
YASGNAYTLFSIAAVVLGGVSLFGGKGSAIGAIFGALAFRTIGDLLFVFDFDPLWQPLFQ
EECCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHH
GVILLIAVSLGAFALFRVRNRLEWFL
HHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKDWRYWLAEQRGTLLALGIFIVMFIIYTSNHPAGFTANVVQTAANKGVLLAFVAMAQTL
CCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHH
VVITAGIDLSVGMIFLLTNCLASWLVVGTPMQTALGVIAVLAAGLLCGAINGAIVIYGRL
HHHEECCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECH
QPIVATIATGAVYYGIGLLLRPFPGGSVNEDLADAMTGRVFDLVPASLVVLFAIVLLIWV
HHHHHHHHHHHHHHHHHHHEECCCCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHC
PFSRSVLGRAAYAAGSSETAAYMSGVPIRRGKFAAYTLAGLLAAIGGLFLTFFTYTGDAA
CCCHHHHHHHHHCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCE
YASGNAYTLFSIAAVVLGGVSLFGGKGSAIGAIFGALAFRTIGDLLFVFDFDPLWQPLFQ
EECCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHH
GVILLIAVSLGAFALFRVRNRLEWFL
HHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]