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The map label for this gene is yddE [C]

Identifier: 13471426

GI number: 13471426

Start: 1166531

End: 1167439

Strand: Reverse

Name: yddE [C]

Synonym: mll1393

Alternate gene names: 13471426

Gene position: 1167439-1166531 (Counterclockwise)

Preceding gene: 13471431

Following gene: 13471425

Centisome position: 16.59

GC content: 64.14

Gene sequence:

>909_bases
ATGCAAACCCGGAATTACTTGCTTTACGATGTGTTTACGACCGAGCGACTGGCCGGCAACCCGCTGGCCGTGGTGCTGGA
TTGCAAAGGTCTGGACACGATAGCGATGCAGGCCATCGCGCGCGAATTCAACCTGTCCGAGACGGTCTTCGTGCTGCCGC
CGGACAACCCCAAGCATAAAAACCGCATCCGCATCTTCACGCCCGACTATGAAATGCCGTTCGCCGGCCATCCGACCGTG
GGTTCCGCAATCGCGCTGGCCGAACTGGCTGGCGAAAGCGGGGCCGGCATCTTCGTGCTGGAGGAAAACATCGGTCCGGT
GCGCTGCGCCGTCAGCAGGCATGACGGCGCAGCCTTCGCCGAGTTCGACCTGGCGAAATTGCCGGAGCCATTGCAGCTCG
AGGCTGATCCGCAGGCGATCGGTGCCGCCCTCGGCTTGGCGCCGCATGAGATCGGCTTCGAGAATCACCGCGTCGCCTTC
TGGTCGGCGGGCGTGCCCTATGTGACCATTCCGGTCGCCAATCTCGAAGCGGCGGGCCGCATCCGGCTGGACAACCAGGC
CTGGTCGGAACTGGCGCCGCGCAAGAGCGAGTGGGCCTTCGCCAGCCCCTATGTCTATTGCCGTGAGACGGTGAACCACG
AAAGCGCCTTCCATGTGCGCATGATCGTGCCGGGCACGCCTTCCTATGAAGATCCGGCGACCGGTTCGGCGGCGGCGGCC
TTTGCCGGCGCCATCATGCATTTCGATGCTCCGACGGATGGCATTTCGCAGCTGTGGATCGAGCAGGGGCTGGAGATGGG
CCGGCCGTCGCGCATCCGCCTGGAACTGACCGTGCAGGGCGGAAAACTGGCCTCTGCGCGCATTGGCGGCCATGCGGTCA
AGGTGGCGGACGGCAAGCTCTTCATCTGA

Upstream 100 bases:

>100_bases
TCGGACCCCTATGATGCGTAATGTCCCTATCTGTTCACAGATCAGGGTTACCGGTTCAAATATCAAATTAAATTTCGCCC
ATGTTGGGATTGAGGCAGGG

Downstream 100 bases:

>100_bases
TCGCGGAAAGCGTTTGTCGATTTGTCGGGAAATGATTCCGGCAGGGCTAGACATGACCGATGGTGGCGGCTATATGCCCG
CCAACGCCGGTTTTTGCCGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 302

Protein sequence:

>302_residues
MQTRNYLLYDVFTTERLAGNPLAVVLDCKGLDTIAMQAIAREFNLSETVFVLPPDNPKHKNRIRIFTPDYEMPFAGHPTV
GSAIALAELAGESGAGIFVLEENIGPVRCAVSRHDGAAFAEFDLAKLPEPLQLEADPQAIGAALGLAPHEIGFENHRVAF
WSAGVPYVTIPVANLEAAGRIRLDNQAWSELAPRKSEWAFASPYVYCRETVNHESAFHVRMIVPGTPSYEDPATGSAAAA
FAGAIMHFDAPTDGISQLWIEQGLEMGRPSRIRLELTVQGGKLASARIGGHAVKVADGKLFI

Sequences:

>Translated_302_residues
MQTRNYLLYDVFTTERLAGNPLAVVLDCKGLDTIAMQAIAREFNLSETVFVLPPDNPKHKNRIRIFTPDYEMPFAGHPTV
GSAIALAELAGESGAGIFVLEENIGPVRCAVSRHDGAAFAEFDLAKLPEPLQLEADPQAIGAALGLAPHEIGFENHRVAF
WSAGVPYVTIPVANLEAAGRIRLDNQAWSELAPRKSEWAFASPYVYCRETVNHESAFHVRMIVPGTPSYEDPATGSAAAA
FAGAIMHFDAPTDGISQLWIEQGLEMGRPSRIRLELTVQGGKLASARIGGHAVKVADGKLFI
>Mature_302_residues
MQTRNYLLYDVFTTERLAGNPLAVVLDCKGLDTIAMQAIAREFNLSETVFVLPPDNPKHKNRIRIFTPDYEMPFAGHPTV
GSAIALAELAGESGAGIFVLEENIGPVRCAVSRHDGAAFAEFDLAKLPEPLQLEADPQAIGAALGLAPHEIGFENHRVAF
WSAGVPYVTIPVANLEAAGRIRLDNQAWSELAPRKSEWAFASPYVYCRETVNHESAFHVRMIVPGTPSYEDPATGSAAAA
FAGAIMHFDAPTDGISQLWIEQGLEMGRPSRIRLELTVQGGKLASARIGGHAVKVADGKLFI

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family

Homologues:

Organism=Saccharomyces cerevisiae, GI6321818, Length=306, Percent_Identity=29.4117647058824, Blast_Score=100, Evalue=2e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1393_RHILO (Q98KN6)

Other databases:

- EMBL:   BA000012
- RefSeq:   NP_102992.1
- ProteinModelPortal:   Q98KN6
- GeneID:   1225655
- GenomeReviews:   BA000012_GR
- KEGG:   mlo:mll1393
- NMPDR:   fig|266835.1.peg.1097
- HOGENOM:   HBG563743
- OMA:   VLEENVG
- ProtClustDB:   CLSK2459065
- InterPro:   IPR003719
- PANTHER:   PTHR13774
- PIRSF:   PIRSF016184
- TIGRFAMs:   TIGR00654

Pfam domain/function: PF02567 PhzC-PhzF

EC number: NA

Molecular weight: Translated: 32644; Mature: 32644

Theoretical pI: Translated: 5.36; Mature: 5.36

Prosite motif: NA

Important sites: ACT_SITE 47-47

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTRNYLLYDVFTTERLAGNPLAVVLDCKGLDTIAMQAIAREFNLSETVFVLPPDNPKHK
CCCCCEEEEEEEEHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCC
NRIRIFTPDYEMPFAGHPTVGSAIALAELAGESGAGIFVLEENIGPVRCAVSRHDGAAFA
CEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEECCCCEEEEEEECCCCCEEE
EFDLAKLPEPLQLEADPQAIGAALGLAPHEIGFENHRVAFWSAGVPYVTIPVANLEAAGR
EEHHHHCCCCEEECCCHHHHHHHHCCCHHHCCCCCCEEEEEECCCCEEEEEEECCCCCCE
IRLDNQAWSELAPRKSEWAFASPYVYCRETVNHESAFHVRMIVPGTPSYEDPATGSAAAA
EEECCHHHHHHCCCCCCCEECCCEEEEEHHCCCCCEEEEEEEECCCCCCCCCCCCCHHHH
FAGAIMHFDAPTDGISQLWIEQGLEMGRPSRIRLELTVQGGKLASARIGGHAVKVADGKL
HHEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEEEECCCEEEEEEECCEEEEEECCEE
FI
EC
>Mature Secondary Structure
MQTRNYLLYDVFTTERLAGNPLAVVLDCKGLDTIAMQAIAREFNLSETVFVLPPDNPKHK
CCCCCEEEEEEEEHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCC
NRIRIFTPDYEMPFAGHPTVGSAIALAELAGESGAGIFVLEENIGPVRCAVSRHDGAAFA
CEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEECCCCEEEEEEECCCCCEEE
EFDLAKLPEPLQLEADPQAIGAALGLAPHEIGFENHRVAFWSAGVPYVTIPVANLEAAGR
EEHHHHCCCCEEECCCHHHHHHHHCCCHHHCCCCCCEEEEEECCCCEEEEEEECCCCCCE
IRLDNQAWSELAPRKSEWAFASPYVYCRETVNHESAFHVRMIVPGTPSYEDPATGSAAAA
EEECCHHHHHHCCCCCCCEECCCEEEEEHHCCCCCEEEEEEEECCCCCCCCCCCCCHHHH
FAGAIMHFDAPTDGISQLWIEQGLEMGRPSRIRLELTVQGGKLASARIGGHAVKVADGKL
HHEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEEEECCCEEEEEEECCEEEEEECCEE
FI
EC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11214968