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The map label for this gene is ycbB [H]

Identifier: 13470744

GI number: 13470744

Start: 392827

End: 394707

Strand: Reverse

Name: ycbB [H]

Synonym: mll0533

Alternate gene names: 13470744

Gene position: 394707-392827 (Counterclockwise)

Preceding gene: 13470745

Following gene: 13470739

Centisome position: 5.61

GC content: 63.26

Gene sequence:

>1881_bases
ATGAAATTCCTCGGTAAAAAAGCAACCGCGATGCCGCTTGTGGCGATCGCTGCAACGCTCGCTCTTGGCGCGCCTCAGGC
AGGCGCTCAGGGGCTCTTCGACATGCTGTTCGGCGGCGGCGTCAGGCATGAGCCGCAGGGGGAATTTCCGCCTCCGCCAA
AGCACAAACCCAAAGTCCCGGCCGGCGGCGGTGGCGGCGCGAAGATCAGCGGACCGTCCTATTACACCTACAAGGCTGAC
AAGCTTATTCGCGTCGACTTCTCGACGCTGTCCGCCGCGCCTCAGCCGGCGACGCCGCAGGACGCGGCGTTCGTTCCGTC
GGCAACGGGGGCTGCTTTCCACGACGCCATTGCTGGTCTCAGCGACTACGAACTCTATGCCGAGCCCGACATCGCGAAGG
CACTGATCGCCTATTACTCGGCCAATCCGGACTTCATCTGGGTGAACGGAACCAGCCCCAACAACCGCGCCCAGGATGCG
GTGCGGGTGCTGGGCGAGGCCGCGAGCTATGGCCTGACGCCCGCCGACTATACGGTCGATGTGCCGGCCACGACTTCGGC
CTCAACGGATGACGCGGCCAAGCTCAGGGAACTCGTGCGCTTCGAGATGGCGCTGTCGGCACGCGTCTTGCGCTACGCCC
ATGACGCCCAGAACGGCCGTGTCGAGCCCAACCGGATGACCGGTTACTATGATTTCCCGGCCAAGCCGCTCGACATGGTC
GGCGTGCTGAAGACGCTGGCGCATACGCAGGAAGTGCGCACCTATCTCGAATCACGGCATCCGCAGAATGCGGAATATCA
GGCGCTGCGCGTCGAACTGGAGGCCCTGCAGGCCAGTGCGGAAAATGAGATCGTCGTCGATCCCAAACTGCTGCTGAAGC
CCGGCGAGACCAGCCCCGAGCTGCCAAAACTGCTGTCGCTGATCGCGCGCAATCTCGATGACAATATGGGCGGCACCTAT
GGCGAGCTGCTGTCGCGGCTCGCGAGCAGCGAGGTTTATGTTCCCGAGCTGGTGCCGCTGATCAAGGCGGTGCAGGTGAA
GGAAGGCATGAAGGGCGACGGCGTCATCGGTCCGCGCACCGTCGCCTTGCTGGCCGGCACGTCGAAGGCCGACAGGCTGC
TCAAGGTGCAGGTGGCGCTTGAGGAACTGCGCTGGCTGCCTTCCGATCTCGGCAGCCCGCGTGTCTTCATCAACCAGCCG
GCGTTCACCGCGAGCTATATCGACAATGGCGAGGAGAAGCTGAAGACGCGCGTCGTCGTCGGCCGGGTGACCAACCAGAC
GGCTTTCTTCTACGACCAGATCAAGCAGGTCGACTTCCATCCCTATTGGGGCGTGCCGCAGTCGATCATCGTCAATGAGA
TGCTGCCCAGATTGCGCAGCGATCCCGGCTATCTCGACCGGGCCGGCTACGAAGTGACGGATTCGCGCGGCAAGCGCATT
CCCTCGTCGGCGGTCAATTGGGGCGCTTATGGCGCCAACATTCCCTACAGTGTGCGCCAGCAGCCGAGCGAGGCCAATGC
GCTGGGCGAACTGAAGATCCTGTTCCCCAACAAGCACGCGATCTACATGCACGACACGCCGCAGAAATCGTTCTTCAAGC
AGGACATGCGTGCGCTCAGCCATGGTTGCGTGCGCCTGCAGGATCCGCGCGGCATGGCGGCGGCGGTGCTCGGCACCTCG
GTCGACTATGTCGCCGAGAAGCTCAAGCACGGACATTCGACCGAGGATGTGACACGCAAGATTCCGGTCTATGTCGCCTA
TTTCACCGCCTGGCCCGACATGTCCGGCAAGGTCGAGTATTTCAGCGACGTTTATGACCGCGATTCGCGGCTGAAGCAGG
CCCTGGACGCCACCGAGGCCGTGCGCTCGCCGTCGAGCTGA

Upstream 100 bases:

>100_bases
CGGTATGAATCGGTATAGTCGCGCCTTACATCCGCCATGCGGTGAGCGAGACGGTTTAGCGTGCGGAACGGGAACCGGTT
GCGACCGGAGCGGGTGATCC

Downstream 100 bases:

>100_bases
TCGATTAGATTTGCGACAACGGGCGGCGGAAACCCGCCTCCCGCCCGGCGATCAGCCAGTAGATCAATCCGGCGACGAGG
CCGGCGGCTGCGATGATGCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 626; Mature: 626

Protein sequence:

>626_residues
MKFLGKKATAMPLVAIAATLALGAPQAGAQGLFDMLFGGGVRHEPQGEFPPPPKHKPKVPAGGGGGAKISGPSYYTYKAD
KLIRVDFSTLSAAPQPATPQDAAFVPSATGAAFHDAIAGLSDYELYAEPDIAKALIAYYSANPDFIWVNGTSPNNRAQDA
VRVLGEAASYGLTPADYTVDVPATTSASTDDAAKLRELVRFEMALSARVLRYAHDAQNGRVEPNRMTGYYDFPAKPLDMV
GVLKTLAHTQEVRTYLESRHPQNAEYQALRVELEALQASAENEIVVDPKLLLKPGETSPELPKLLSLIARNLDDNMGGTY
GELLSRLASSEVYVPELVPLIKAVQVKEGMKGDGVIGPRTVALLAGTSKADRLLKVQVALEELRWLPSDLGSPRVFINQP
AFTASYIDNGEEKLKTRVVVGRVTNQTAFFYDQIKQVDFHPYWGVPQSIIVNEMLPRLRSDPGYLDRAGYEVTDSRGKRI
PSSAVNWGAYGANIPYSVRQQPSEANALGELKILFPNKHAIYMHDTPQKSFFKQDMRALSHGCVRLQDPRGMAAAVLGTS
VDYVAEKLKHGHSTEDVTRKIPVYVAYFTAWPDMSGKVEYFSDVYDRDSRLKQALDATEAVRSPSS

Sequences:

>Translated_626_residues
MKFLGKKATAMPLVAIAATLALGAPQAGAQGLFDMLFGGGVRHEPQGEFPPPPKHKPKVPAGGGGGAKISGPSYYTYKAD
KLIRVDFSTLSAAPQPATPQDAAFVPSATGAAFHDAIAGLSDYELYAEPDIAKALIAYYSANPDFIWVNGTSPNNRAQDA
VRVLGEAASYGLTPADYTVDVPATTSASTDDAAKLRELVRFEMALSARVLRYAHDAQNGRVEPNRMTGYYDFPAKPLDMV
GVLKTLAHTQEVRTYLESRHPQNAEYQALRVELEALQASAENEIVVDPKLLLKPGETSPELPKLLSLIARNLDDNMGGTY
GELLSRLASSEVYVPELVPLIKAVQVKEGMKGDGVIGPRTVALLAGTSKADRLLKVQVALEELRWLPSDLGSPRVFINQP
AFTASYIDNGEEKLKTRVVVGRVTNQTAFFYDQIKQVDFHPYWGVPQSIIVNEMLPRLRSDPGYLDRAGYEVTDSRGKRI
PSSAVNWGAYGANIPYSVRQQPSEANALGELKILFPNKHAIYMHDTPQKSFFKQDMRALSHGCVRLQDPRGMAAAVLGTS
VDYVAEKLKHGHSTEDVTRKIPVYVAYFTAWPDMSGKVEYFSDVYDRDSRLKQALDATEAVRSPSS
>Mature_626_residues
MKFLGKKATAMPLVAIAATLALGAPQAGAQGLFDMLFGGGVRHEPQGEFPPPPKHKPKVPAGGGGGAKISGPSYYTYKAD
KLIRVDFSTLSAAPQPATPQDAAFVPSATGAAFHDAIAGLSDYELYAEPDIAKALIAYYSANPDFIWVNGTSPNNRAQDA
VRVLGEAASYGLTPADYTVDVPATTSASTDDAAKLRELVRFEMALSARVLRYAHDAQNGRVEPNRMTGYYDFPAKPLDMV
GVLKTLAHTQEVRTYLESRHPQNAEYQALRVELEALQASAENEIVVDPKLLLKPGETSPELPKLLSLIARNLDDNMGGTY
GELLSRLASSEVYVPELVPLIKAVQVKEGMKGDGVIGPRTVALLAGTSKADRLLKVQVALEELRWLPSDLGSPRVFINQP
AFTASYIDNGEEKLKTRVVVGRVTNQTAFFYDQIKQVDFHPYWGVPQSIIVNEMLPRLRSDPGYLDRAGYEVTDSRGKRI
PSSAVNWGAYGANIPYSVRQQPSEANALGELKILFPNKHAIYMHDTPQKSFFKQDMRALSHGCVRLQDPRGMAAAVLGTS
VDYVAEKLKHGHSTEDVTRKIPVYVAYFTAWPDMSGKVEYFSDVYDRDSRLKQALDATEAVRSPSS

Specific function: Responsible, at least in part, for generating a meso- diaminopimelyl-3-a meso-diaminopimelyl-3 cross-link [H]

COG id: COG2989

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1787155, Length=450, Percent_Identity=29.3333333333333, Blast_Score=182, Evalue=8e-47,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002477
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01471 PG_binding_1; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 68277; Mature: 68277

Theoretical pI: Translated: 6.98; Mature: 6.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFLGKKATAMPLVAIAATLALGAPQAGAQGLFDMLFGGGVRHEPQGEFPPPPKHKPKVP
CCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
AGGGGGAKISGPSYYTYKADKLIRVDFSTLSAAPQPATPQDAAFVPSATGAAFHDAIAGL
CCCCCCCCCCCCEEEEEECCEEEEEEHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCC
SDYELYAEPDIAKALIAYYSANPDFIWVNGTSPNNRAQDAVRVLGEAASYGLTPADYTVD
CCCEEECCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCEEEE
VPATTSASTDDAAKLRELVRFEMALSARVLRYAHDAQNGRVEPNRMTGYYDFPAKPLDMV
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCHHHHH
GVLKTLAHTQEVRTYLESRHPQNAEYQALRVELEALQASAENEIVVDPKLLLKPGETSPE
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCH
LPKLLSLIARNLDDNMGGTYGELLSRLASSEVYVPELVPLIKAVQVKEGMKGDGVIGPRT
HHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCE
VALLAGTSKADRLLKVQVALEELRWLPSDLGSPRVFINQPAFTASYIDNGEEKLKTRVVV
EEEEECCCHHHHHHHHHHHHHHHHHCHHHCCCCEEEEECCCEEHHHHCCCHHHHHHEEEE
GRVTNQTAFFYDQIKQVDFHPYWGVPQSIIVNEMLPRLRSDPGYLDRAGYEVTDSRGKRI
EEECCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCC
PSSAVNWGAYGANIPYSVRQQPSEANALGELKILFPNKHAIYMHDTPQKSFFKQDMRALS
CCHHCCCCCCCCCCCHHHHCCCCCCCCCCEEEEEECCCEEEEEECCCHHHHHHHHHHHHH
HGCVRLQDPRGMAAAVLGTSVDYVAEKLKHGHSTEDVTRKIPVYVAYFTAWPDMSGKVEY
CCCEEEECCCCCCHHHHHCCHHHHHHHHHCCCCHHHHHHHCCEEEEEEEECCCCCCCHHH
FSDVYDRDSRLKQALDATEAVRSPSS
HHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MKFLGKKATAMPLVAIAATLALGAPQAGAQGLFDMLFGGGVRHEPQGEFPPPPKHKPKVP
CCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
AGGGGGAKISGPSYYTYKADKLIRVDFSTLSAAPQPATPQDAAFVPSATGAAFHDAIAGL
CCCCCCCCCCCCEEEEEECCEEEEEEHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCC
SDYELYAEPDIAKALIAYYSANPDFIWVNGTSPNNRAQDAVRVLGEAASYGLTPADYTVD
CCCEEECCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCEEEE
VPATTSASTDDAAKLRELVRFEMALSARVLRYAHDAQNGRVEPNRMTGYYDFPAKPLDMV
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCHHHHH
GVLKTLAHTQEVRTYLESRHPQNAEYQALRVELEALQASAENEIVVDPKLLLKPGETSPE
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCH
LPKLLSLIARNLDDNMGGTYGELLSRLASSEVYVPELVPLIKAVQVKEGMKGDGVIGPRT
HHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCE
VALLAGTSKADRLLKVQVALEELRWLPSDLGSPRVFINQPAFTASYIDNGEEKLKTRVVV
EEEEECCCHHHHHHHHHHHHHHHHHCHHHCCCCEEEEECCCEEHHHHCCCHHHHHHEEEE
GRVTNQTAFFYDQIKQVDFHPYWGVPQSIIVNEMLPRLRSDPGYLDRAGYEVTDSRGKRI
EEECCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCC
PSSAVNWGAYGANIPYSVRQQPSEANALGELKILFPNKHAIYMHDTPQKSFFKQDMRALS
CCHHCCCCCCCCCCCHHHHCCCCCCCCCCEEEEEECCCEEEEEECCCHHHHHHHHHHHHH
HGCVRLQDPRGMAAAVLGTSVDYVAEKLKHGHSTEDVTRKIPVYVAYFTAWPDMSGKVEY
CCCEEEECCCCCCHHHHHCCHHHHHHHHHCCCCHHHHHHHCCEEEEEEEECCCCCCCHHH
FSDVYDRDSRLKQALDATEAVRSPSS
HHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1989883 [H]