BacMap

Definition	Mesorhizobium loti MAFF303099 chromosome, complete genome.
Accession	NC_002678
Length	7,036,071

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The map label for this gene is yjgI [H]

Identifier: 13470745

GI number: 13470745

Start: 394918

End: 395664

Strand: Reverse

Name: yjgI [H]

Synonym: mll0534

Alternate gene names: 13470745

Gene position: 395664-394918 (Counterclockwise)

Preceding gene: 13470748

Following gene: 13470744

Centisome position: 5.62

GC content: 65.33

Gene sequence:

>747_bases
ATGTCTTCCAGCAATTTGAACGGCAAGGCGGCACTCGTCACCGGCGGCAGCCGGGGCATTGGCGCGGCGATTGCGCGAAG
GCTCGCGGCAGATGGCGCCGATGTCGCGCTGACCTATGTGCATGGCGAGGAACAGGCCCGCTCGGTCGTCGCCGAGATTG
AAGCCAAGGGCGGCCGCGCCATCGCGATCAGGGCAGATAACCGCGATGCTGAGGCCATAGACAGGGCCGTTGACGAGACC
GCCGCCGCCTTCGGCCGGCTCGACATATTGGTCAACAGTGCCGGCATCTGGCGCGCGGCACCCATCGACACATTGTCGTT
AGCCGACTTCGACGAAACCATGTCGGTCAATCTCAGAGCCCCGTTCATCGCCTCGAAAGCGGCTGCGGCACATATGGGCG
AGGGTGGCCGAATCATCTCGATCGGCAGCAATCTCGCCGAACGCGTCACCGACACCAACCTCGGCGCCTATTCCGCCAGC
AAGGCGGCGCTGGTCGGCTTGACCAAGGCACTCGCACGCGACCTCGGTTCGCGCGGCATCACCGCCAATGTCGTCCATCC
CGGTTCGACCGACACCGACATGAACCCGGCGGATGGACCGCATGCCGAACACCAGCGCCAAAAGATGGCGACGCCGCGAT
TCGGCAAGGCCGATGACATCGCCGGCATGGTTGCCTGGCTCGCCGGTCCGGAAGGACGTTTCGTCACGGGCGCGGCGTTG
ACCATCGATGGCGGCGCCAACGCCTGA

Upstream 100 bases:

>100_bases
GTTCTTCTTTTCTGTGTTGATCGATACATAAATGAGTTGACGCGGTCGAGCAAGGCTGCCAGATATTTGTGTATCAATCG
CTACATAAATGGAGAAACCG

Downstream 100 bases:

>100_bases
ATTCTGCGGCATTCCCAGGGCCGGAGCGAAACACCCGCGCTCCAGCCGTCACTATCTTGTGAAACCGTTCTGCAACAGGC
TTTCCAAAATTTATGGAAGC

Product: short-chain dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 248; Mature: 247

Protein sequence:

>248_residues
MSSSNLNGKAALVTGGSRGIGAAIARRLAADGADVALTYVHGEEQARSVVAEIEAKGGRAIAIRADNRDAEAIDRAVDET
AAAFGRLDILVNSAGIWRAAPIDTLSLADFDETMSVNLRAPFIASKAAAAHMGEGGRIISIGSNLAERVTDTNLGAYSAS
KAALVGLTKALARDLGSRGITANVVHPGSTDTDMNPADGPHAEHQRQKMATPRFGKADDIAGMVAWLAGPEGRFVTGAAL
TIDGGANA

Sequences:

>Translated_248_residues
MSSSNLNGKAALVTGGSRGIGAAIARRLAADGADVALTYVHGEEQARSVVAEIEAKGGRAIAIRADNRDAEAIDRAVDET
AAAFGRLDILVNSAGIWRAAPIDTLSLADFDETMSVNLRAPFIASKAAAAHMGEGGRIISIGSNLAERVTDTNLGAYSAS
KAALVGLTKALARDLGSRGITANVVHPGSTDTDMNPADGPHAEHQRQKMATPRFGKADDIAGMVAWLAGPEGRFVTGAAL
TIDGGANA
>Mature_247_residues
SSSNLNGKAALVTGGSRGIGAAIARRLAADGADVALTYVHGEEQARSVVAEIEAKGGRAIAIRADNRDAEAIDRAVDETA
AAFGRLDILVNSAGIWRAAPIDTLSLADFDETMSVNLRAPFIASKAAAAHMGEGGRIISIGSNLAERVTDTNLGAYSASK
AALVGLTKALARDLGSRGITANVVHPGSTDTDMNPADGPHAEHQRQKMATPRFGKADDIAGMVAWLAGPEGRFVTGAALT
IDGGANA

Specific function: Unknown

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI32483357, Length=246, Percent_Identity=32.1138211382114, Blast_Score=110, Evalue=1e-24,
Organism=Homo sapiens, GI40254992, Length=239, Percent_Identity=32.2175732217573, Blast_Score=107, Evalue=8e-24,
Organism=Homo sapiens, GI15277342, Length=252, Percent_Identity=33.3333333333333, Blast_Score=102, Evalue=4e-22,
Organism=Homo sapiens, GI5031737, Length=251, Percent_Identity=31.0756972111554, Blast_Score=101, Evalue=6e-22,
Organism=Homo sapiens, GI19923817, Length=253, Percent_Identity=29.6442687747036, Blast_Score=101, Evalue=6e-22,
Organism=Homo sapiens, GI66933014, Length=251, Percent_Identity=32.6693227091633, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI10190704, Length=250, Percent_Identity=32.8, Blast_Score=93, Evalue=2e-19,
Organism=Homo sapiens, GI7705925, Length=246, Percent_Identity=30.0813008130081, Blast_Score=86, Evalue=4e-17,
Organism=Homo sapiens, GI31542939, Length=197, Percent_Identity=32.994923857868, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI33667109, Length=194, Percent_Identity=32.9896907216495, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI4503817, Length=194, Percent_Identity=30.4123711340206, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI4504505, Length=244, Percent_Identity=32.7868852459016, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI4758504, Length=262, Percent_Identity=29.0076335877863, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI126723750, Length=249, Percent_Identity=28.1124497991968, Blast_Score=79, Evalue=5e-15,
Organism=Homo sapiens, GI126723191, Length=187, Percent_Identity=33.6898395721925, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI40254986, Length=216, Percent_Identity=30.5555555555556, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI224922801, Length=183, Percent_Identity=31.6939890710383, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI83715985, Length=192, Percent_Identity=31.7708333333333, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI59889578, Length=220, Percent_Identity=29.5454545454545, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI109715829, Length=238, Percent_Identity=30.672268907563, Blast_Score=66, Evalue=3e-11,
Organism=Escherichia coli, GI2367365, Length=239, Percent_Identity=46.8619246861925, Blast_Score=191, Evalue=3e-50,
Organism=Escherichia coli, GI1787335, Length=249, Percent_Identity=38.9558232931727, Blast_Score=130, Evalue=6e-32,
Organism=Escherichia coli, GI1788459, Length=244, Percent_Identity=34.4262295081967, Blast_Score=124, Evalue=8e-30,
Organism=Escherichia coli, GI1789208, Length=254, Percent_Identity=32.6771653543307, Blast_Score=122, Evalue=2e-29,
Organism=Escherichia coli, GI87082100, Length=255, Percent_Identity=33.7254901960784, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI87082160, Length=251, Percent_Identity=34.6613545816733, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1787905, Length=245, Percent_Identity=35.5102040816327, Blast_Score=110, Evalue=8e-26,
Organism=Escherichia coli, GI2367175, Length=251, Percent_Identity=33.8645418326693, Blast_Score=109, Evalue=1e-25,
Organism=Escherichia coli, GI1789057, Length=258, Percent_Identity=32.9457364341085, Blast_Score=108, Evalue=5e-25,
Organism=Escherichia coli, GI1790717, Length=246, Percent_Identity=30.8943089430894, Blast_Score=107, Evalue=9e-25,
Organism=Escherichia coli, GI1789378, Length=250, Percent_Identity=33.2, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1786812, Length=256, Percent_Identity=31.25, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1787526, Length=244, Percent_Identity=29.9180327868852, Blast_Score=78, Evalue=6e-16,
Organism=Caenorhabditis elegans, GI17561402, Length=256, Percent_Identity=33.59375, Blast_Score=107, Evalue=6e-24,
Organism=Caenorhabditis elegans, GI71994604, Length=253, Percent_Identity=32.0158102766798, Blast_Score=106, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI17560676, Length=253, Percent_Identity=31.6205533596838, Blast_Score=104, Evalue=5e-23,
Organism=Caenorhabditis elegans, GI17555706, Length=246, Percent_Identity=30.8943089430894, Blast_Score=101, Evalue=4e-22,
Organism=Caenorhabditis elegans, GI115534694, Length=244, Percent_Identity=32.7868852459016, Blast_Score=101, Evalue=4e-22,
Organism=Caenorhabditis elegans, GI17562906, Length=263, Percent_Identity=30.0380228136882, Blast_Score=98, Evalue=5e-21,
Organism=Caenorhabditis elegans, GI17562910, Length=256, Percent_Identity=30.46875, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI25147288, Length=248, Percent_Identity=30.6451612903226, Blast_Score=95, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI71994600, Length=251, Percent_Identity=29.8804780876494, Blast_Score=95, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI17559104, Length=260, Percent_Identity=31.5384615384615, Blast_Score=92, Evalue=4e-19,
Organism=Caenorhabditis elegans, GI17562908, Length=264, Percent_Identity=29.9242424242424, Blast_Score=91, Evalue=4e-19,
Organism=Caenorhabditis elegans, GI193204405, Length=261, Percent_Identity=30.2681992337165, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17531453, Length=263, Percent_Identity=29.6577946768061, Blast_Score=88, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI17568967, Length=198, Percent_Identity=33.3333333333333, Blast_Score=86, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17560220, Length=264, Percent_Identity=32.1969696969697, Blast_Score=86, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI17544670, Length=272, Percent_Identity=24.6323529411765, Blast_Score=85, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI17562904, Length=263, Percent_Identity=28.5171102661597, Blast_Score=84, Evalue=7e-17,
Organism=Caenorhabditis elegans, GI17560332, Length=264, Percent_Identity=29.5454545454545, Blast_Score=81, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI17560150, Length=262, Percent_Identity=27.0992366412214, Blast_Score=81, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI17538182, Length=253, Percent_Identity=32.0158102766798, Blast_Score=81, Evalue=6e-16,
Organism=Caenorhabditis elegans, GI72000259, Length=262, Percent_Identity=29.3893129770992, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17563726, Length=259, Percent_Identity=28.5714285714286, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI71982365, Length=196, Percent_Identity=27.0408163265306, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17562990, Length=261, Percent_Identity=28.735632183908, Blast_Score=77, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI17565030, Length=256, Percent_Identity=27.34375, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17538486, Length=261, Percent_Identity=27.5862068965517, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17538480, Length=264, Percent_Identity=27.6515151515151, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17551412, Length=262, Percent_Identity=27.0992366412214, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI193203117, Length=194, Percent_Identity=30.4123711340206, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17508651, Length=254, Percent_Identity=29.9212598425197, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17564282, Length=201, Percent_Identity=29.3532338308458, Blast_Score=71, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI193203115, Length=195, Percent_Identity=30.2564102564103, Blast_Score=70, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI17536025, Length=259, Percent_Identity=28.957528957529, Blast_Score=70, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI17536651, Length=250, Percent_Identity=27.2, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17558006, Length=207, Percent_Identity=28.5024154589372, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17558628, Length=134, Percent_Identity=32.089552238806, Blast_Score=65, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6324126, Length=247, Percent_Identity=27.5303643724696, Blast_Score=77, Evalue=2e-15,
Organism=Saccharomyces cerevisiae, GI6322861, Length=191, Percent_Identity=30.3664921465969, Blast_Score=73, Evalue=5e-14,
Organism=Drosophila melanogaster, GI24639444, Length=252, Percent_Identity=33.7301587301587, Blast_Score=119, Evalue=1e-27,
Organism=Drosophila melanogaster, GI24644339, Length=253, Percent_Identity=34.3873517786561, Blast_Score=116, Evalue=1e-26,
Organism=Drosophila melanogaster, GI23397609, Length=254, Percent_Identity=37.007874015748, Blast_Score=116, Evalue=1e-26,
Organism=Drosophila melanogaster, GI28571526, Length=254, Percent_Identity=32.2834645669291, Blast_Score=110, Evalue=1e-24,
Organism=Drosophila melanogaster, GI21355319, Length=248, Percent_Identity=31.4516129032258, Blast_Score=103, Evalue=9e-23,
Organism=Drosophila melanogaster, GI21357041, Length=253, Percent_Identity=32.8063241106719, Blast_Score=101, Evalue=5e-22,
Organism=Drosophila melanogaster, GI24643142, Length=249, Percent_Identity=32.5301204819277, Blast_Score=99, Evalue=2e-21,
Organism=Drosophila melanogaster, GI24644337, Length=251, Percent_Identity=33.0677290836653, Blast_Score=98, Evalue=6e-21,
Organism=Drosophila melanogaster, GI17737361, Length=258, Percent_Identity=31.0077519379845, Blast_Score=82, Evalue=4e-16,
Organism=Drosophila melanogaster, GI21357673, Length=198, Percent_Identity=26.7676767676768, Blast_Score=75, Evalue=5e-14,
Organism=Drosophila melanogaster, GI18859837, Length=204, Percent_Identity=33.8235294117647, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24665243, Length=201, Percent_Identity=28.8557213930348, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI221331218, Length=197, Percent_Identity=29.4416243654822, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24665247, Length=202, Percent_Identity=28.7128712871287, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24656154, Length=211, Percent_Identity=27.9620853080569, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI19922628, Length=211, Percent_Identity=27.9620853080569, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI45554248, Length=211, Percent_Identity=28.9099526066351, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24640117, Length=211, Percent_Identity=28.9099526066351, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI21356301, Length=199, Percent_Identity=26.1306532663317, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI221331216, Length=198, Percent_Identity=29.2929292929293, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI281364892, Length=201, Percent_Identity=27.363184079602, Blast_Score=65, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 25327; Mature: 25195

Theoretical pI: Translated: 6.03; Mature: 6.03

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSSNLNGKAALVTGGSRGIGAAIARRLAADGADVALTYVHGEEQARSVVAEIEAKGGRA
CCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHCCCCEE
IAIRADNRDAEAIDRAVDETAAAFGRLDILVNSAGIWRAAPIDTLSLADFDETMSVNLRA
EEEEECCCCHHHHHHHHHHHHHHHHEEEEEEECCCCEEECCCCEEEECCCCCCEEEEEEC
PFIASKAAAAHMGEGGRIISIGSNLAERVTDTNLGAYSASKAALVGLTKALARDLGSRGI
CCHHHHHHHHHCCCCCEEEEECCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC
TANVVHPGSTDTDMNPADGPHAEHQRQKMATPRFGKADDIAGMVAWLAGPEGRFVTGAAL
EEEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEE
TIDGGANA
EECCCCCC
>Mature Secondary Structure 
SSSNLNGKAALVTGGSRGIGAAIARRLAADGADVALTYVHGEEQARSVVAEIEAKGGRA
CCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHCCCCEE
IAIRADNRDAEAIDRAVDETAAAFGRLDILVNSAGIWRAAPIDTLSLADFDETMSVNLRA
EEEEECCCCHHHHHHHHHHHHHHHHEEEEEEECCCCEEECCCCEEEECCCCCCEEEEEEC
PFIASKAAAAHMGEGGRIISIGSNLAERVTDTNLGAYSASKAALVGLTKALARDLGSRGI
CCHHHHHHHHHCCCCCEEEEECCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC
TANVVHPGSTDTDMNPADGPHAEHQRQKMATPRFGKADDIAGMVAWLAGPEGRFVTGAAL
EEEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEE
TIDGGANA
EECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]