Click here to switch to the map view.

The map label for this gene is yggS [C]

Identifier: 134302727

GI number: 134302727

Start: 1809911

End: 1810579

Strand: Direct

Name: yggS [C]

Synonym: FTW_1929

Alternate gene names: 134302727

Gene position: 1809911-1810579 (Clockwise)

Preceding gene: 134302726

Following gene: 134302730

Centisome position: 95.33

GC content: 33.63

Gene sequence:

>669_bases
ATGATTGATAAAGAATTTATCCAAAAATCATATACTAGTATTATGCAAAATATAGACTCAAAGGCTAGGCTTTTGGCTGT
TAGTAAATATCAGTCTATAGATAAAATAGAGTACTTAGCAGGCCTTGGTCAGTTAGATTTTGGTGAGAATTATTTTCAAG
AGTTAGAACAGAAAGCTCAAAAGTTACCTCATCTAAGATGGCATTTCATCGGTTCGCTACAGTCACGGAAGATAAAGCAT
ATTGTTAAATATGCTAGTTCAATTCAAAGTGTCGAAAACATAGAGCATCTCGAAAAAATTGATAAAGCAGCAGGACAAAT
AGCTAAAATAGTAGATGTTTTTTTACAGATAAATATAGATGACGATATTAATAAGTCTGGTTTTGAATCGACACAATTAG
AGGAAGTTGTCGCAAGTATAATGAAAGCTAAAAGTTTTATGAACCTCAAGATAGTTGGGCTAATGTGTATCCCTGCAAAA
ACTAACGCTCCAGAGAAGAGTTTCGCAAAGATGAAGCATTTTTTTGATACTGTCAACTCTAGATTAAATGATGATCTAAA
GCTATCGAGACTATCAATGGGGATGAGCGCTGATTATAGATTAGCTATACAATATGGTAGTACCGATGTTAGAGTAGGTA
GTAGTTTATTTGGTGCAAGAGCTACCTAA

Upstream 100 bases:

>100_bases
AGCGAAACTTAGAATCTTTGCATTTAAATATTGAGAAATATAGTATAAAAGTTCCTTTCTTAAATGCTGAGAGAAATCTT
ATTGTAATAAGGAAGAAATT

Downstream 100 bases:

>100_bases
CTATTCTTTTATTTATATAATTGGCAAATATCCTTTTATATATTTCATTTACTGTTAGTACAATTCCTACAGCTACTAGT
GTTTCTAGTGCTCTATCTAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MIDKEFIQKSYTSIMQNIDSKARLLAVSKYQSIDKIEYLAGLGQLDFGENYFQELEQKAQKLPHLRWHFIGSLQSRKIKH
IVKYASSIQSVENIEHLEKIDKAAGQIAKIVDVFLQINIDDDINKSGFESTQLEEVVASIMKAKSFMNLKIVGLMCIPAK
TNAPEKSFAKMKHFFDTVNSRLNDDLKLSRLSMGMSADYRLAIQYGSTDVRVGSSLFGARAT

Sequences:

>Translated_222_residues
MIDKEFIQKSYTSIMQNIDSKARLLAVSKYQSIDKIEYLAGLGQLDFGENYFQELEQKAQKLPHLRWHFIGSLQSRKIKH
IVKYASSIQSVENIEHLEKIDKAAGQIAKIVDVFLQINIDDDINKSGFESTQLEEVVASIMKAKSFMNLKIVGLMCIPAK
TNAPEKSFAKMKHFFDTVNSRLNDDLKLSRLSMGMSADYRLAIQYGSTDVRVGSSLFGARAT
>Mature_222_residues
MIDKEFIQKSYTSIMQNIDSKARLLAVSKYQSIDKIEYLAGLGQLDFGENYFQELEQKAQKLPHLRWHFIGSLQSRKIKH
IVKYASSIQSVENIEHLEKIDKAAGQIAKIVDVFLQINIDDDINKSGFESTQLEEVVASIMKAKSFMNLKIVGLMCIPAK
TNAPEKSFAKMKHFFDTVNSRLNDDLKLSRLSMGMSADYRLAIQYGSTDVRVGSSLFGARAT

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=215, Percent_Identity=33.0232558139535, Blast_Score=108, Evalue=5e-24,
Organism=Escherichia coli, GI1789321, Length=209, Percent_Identity=33.0143540669856, Blast_Score=104, Evalue=6e-24,
Organism=Caenorhabditis elegans, GI17533025, Length=238, Percent_Identity=35.7142857142857, Blast_Score=114, Evalue=5e-26,
Organism=Saccharomyces cerevisiae, GI6319435, Length=215, Percent_Identity=36.7441860465116, Blast_Score=108, Evalue=7e-25,
Organism=Drosophila melanogaster, GI45550861, Length=222, Percent_Identity=36.4864864864865, Blast_Score=106, Evalue=1e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 25106; Mature: 25106

Theoretical pI: Translated: 9.45; Mature: 9.45

Prosite motif: PS00589 PTS_HPR_SER ; PS01211 UPF0001

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDKEFIQKSYTSIMQNIDSKARLLAVSKYQSIDKIEYLAGLGQLDFGENYFQELEQKAQ
CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
KLPHLRWHFIGSLQSRKIKHIVKYASSIQSVENIEHLEKIDKAAGQIAKIVDVFLQINID
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
DDINKSGFESTQLEEVVASIMKAKSFMNLKIVGLMCIPAKTNAPEKSFAKMKHFFDTVNS
CCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHH
RLNDDLKLSRLSMGMSADYRLAIQYGSTDVRVGSSLFGARAT
HCCCCHHHHHHHCCCCCCEEEEEEECCCCHHHCHHHHCCCCC
>Mature Secondary Structure
MIDKEFIQKSYTSIMQNIDSKARLLAVSKYQSIDKIEYLAGLGQLDFGENYFQELEQKAQ
CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
KLPHLRWHFIGSLQSRKIKHIVKYASSIQSVENIEHLEKIDKAAGQIAKIVDVFLQINID
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
DDINKSGFESTQLEEVVASIMKAKSFMNLKIVGLMCIPAKTNAPEKSFAKMKHFFDTVNS
CCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHH
RLNDDLKLSRLSMGMSADYRLAIQYGSTDVRVGSSLFGARAT
HCCCCHHHHHHHCCCCCCEEEEEEECCCCHHHCHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11248100 [H]