Click here to switch to the map view.

The map label for this gene is rocC [H]

Identifier: 134302225

GI number: 134302225

Start: 1231363

End: 1232757

Strand: Direct

Name: rocC [H]

Synonym: FTW_1299

Alternate gene names: 134302225

Gene position: 1231363-1232757 (Clockwise)

Preceding gene: 134302223

Following gene: 134302228

Centisome position: 64.86

GC content: 35.84

Gene sequence:

>1395_bases
ATGGCACTTGCTAAAACTCTAAAACCTCGCCACATAGAGCTAATAGCTCTAGGCGGTATAATTGGCTCTTGTTTCTTCTT
AGGTACAGGTTACGTATTAGCAGAAGTTGGACCTGCTGCTATTTTAGCCTATATTCTAGCTGGAATTATCGTATACGCGG
TGACTCTGTGTTTAGCCGAGCTAACAGCCAATTCCCCAAATTCTGGATCATTTATATACTACACTGCCAAATATGTATCA
CCAGCGATAGCATGCGGCATGGGCTGGTCATATTGGCTTAATTGGATAATCTATATCCCTTCAGAATGTATAGCTGGTGG
GATAATCATGCATACTTTTCTACCTGCAGTACCTACCTATATGTGGGCTACTTTGTTTGGCTTATTTATAACTATCATAA
ATCTTACTAAAGTAAAAATTTTTGGTGAGATTGAGTTTTGGTTAGCACTAGTAAAAATTATAGCTCTTGGTCTATTTAGC
GTAATTGCGATACTGATATTTTTTGACATTATCCAAAATAATACTGGTGGCGTACTAGGTGGAACCTATATAGTTAGCGA
TGGTGGTTTTTTTCCAAAGGGTAAGCTTATCCTGATAACAACCATGGTTATACTACTAGTAAATTTCCAAGGTTCAGAAA
TTATCGGACTAGCTGCAAGCGAATCTAATAATGCCGAAAAACAAATGCCAAGAATCGCTAAGCACGTTGCAATCAGAATA
GTTGGTCTGTATGTAATACCAGTTTTTTTACTCGCAACAATCTTCCCATGGCAAAAAATGAGCTTAAGTGATTCTGTTTT
TGCTACAGCTTTACAATATTATCATCTAGATAAATTTGCTGCGGTATTTGCATTTGTAGTTCTTGTAGCCGCATTTTCTT
GTGCTAATAGTGGTTTTTATGCAGCTGTTCGCTCATTATATGGCTTATCTAGAGCAAGAATGGCTCCGAGCATATTTAGA
AAGCTAAACTCATCAGCAATACCACACTTTGCAGTTTATATAAGCATAATAGCTGTGTGGACATTTCTGATACTTTCATT
TAAATTATCCGCTTCTGCAGCTTTTACAAACCTATTAGCAATGTCAGGGTTTACTGCAACAATTTGTTGGATCTGTATAT
GCTGGTCGCAATACAACTTTAGAAAACAGCTTATACGACGAAATGCTACTGATAAGATTCTATTTAAAGCGCCTCTATTC
CCTTATATCTCATTATTTGGTATATGGATACAAGTTTTATGCTTAGTGTTAACATTATTTAATGATGAGCTAAGAGGTGC
TTTCTACTTTGGTGCCCCTGCAATGATTATTCCTTGTTGTATATATTTCTTTGTTTCTAAAAAGAAAAATACTAAAATCG
TGCAAAGAACTATTTCTTTGAAAAAGGTATTTTAA

Upstream 100 bases:

>100_bases
AAATATTTATTAAATTCAAGTAGGCAAAAAGTGCATTTTTTGTTGACAAAGCTAAAACCAAGTCTATAATTCGCTTACCC
TAGCTGCTTTGGAGTAAATT

Downstream 100 bases:

>100_bases
GCATACTGATAAGATTTTGTGTCTGCTTAGGATCTGTATACTCACTTAAGCCGATGTCCATATCAATATGACCTTTCTTT
GGCTGTGCCAGATAAGTCCC

Product: amino acid permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 464; Mature: 463

Protein sequence:

>464_residues
MALAKTLKPRHIELIALGGIIGSCFFLGTGYVLAEVGPAAILAYILAGIIVYAVTLCLAELTANSPNSGSFIYYTAKYVS
PAIACGMGWSYWLNWIIYIPSECIAGGIIMHTFLPAVPTYMWATLFGLFITIINLTKVKIFGEIEFWLALVKIIALGLFS
VIAILIFFDIIQNNTGGVLGGTYIVSDGGFFPKGKLILITTMVILLVNFQGSEIIGLAASESNNAEKQMPRIAKHVAIRI
VGLYVIPVFLLATIFPWQKMSLSDSVFATALQYYHLDKFAAVFAFVVLVAAFSCANSGFYAAVRSLYGLSRARMAPSIFR
KLNSSAIPHFAVYISIIAVWTFLILSFKLSASAAFTNLLAMSGFTATICWICICWSQYNFRKQLIRRNATDKILFKAPLF
PYISLFGIWIQVLCLVLTLFNDELRGAFYFGAPAMIIPCCIYFFVSKKKNTKIVQRTISLKKVF

Sequences:

>Translated_464_residues
MALAKTLKPRHIELIALGGIIGSCFFLGTGYVLAEVGPAAILAYILAGIIVYAVTLCLAELTANSPNSGSFIYYTAKYVS
PAIACGMGWSYWLNWIIYIPSECIAGGIIMHTFLPAVPTYMWATLFGLFITIINLTKVKIFGEIEFWLALVKIIALGLFS
VIAILIFFDIIQNNTGGVLGGTYIVSDGGFFPKGKLILITTMVILLVNFQGSEIIGLAASESNNAEKQMPRIAKHVAIRI
VGLYVIPVFLLATIFPWQKMSLSDSVFATALQYYHLDKFAAVFAFVVLVAAFSCANSGFYAAVRSLYGLSRARMAPSIFR
KLNSSAIPHFAVYISIIAVWTFLILSFKLSASAAFTNLLAMSGFTATICWICICWSQYNFRKQLIRRNATDKILFKAPLF
PYISLFGIWIQVLCLVLTLFNDELRGAFYFGAPAMIIPCCIYFFVSKKKNTKIVQRTISLKKVF
>Mature_463_residues
ALAKTLKPRHIELIALGGIIGSCFFLGTGYVLAEVGPAAILAYILAGIIVYAVTLCLAELTANSPNSGSFIYYTAKYVSP
AIACGMGWSYWLNWIIYIPSECIAGGIIMHTFLPAVPTYMWATLFGLFITIINLTKVKIFGEIEFWLALVKIIALGLFSV
IAILIFFDIIQNNTGGVLGGTYIVSDGGFFPKGKLILITTMVILLVNFQGSEIIGLAASESNNAEKQMPRIAKHVAIRIV
GLYVIPVFLLATIFPWQKMSLSDSVFATALQYYHLDKFAAVFAFVVLVAAFSCANSGFYAAVRSLYGLSRARMAPSIFRK
LNSSAIPHFAVYISIIAVWTFLILSFKLSASAAFTNLLAMSGFTATICWICICWSQYNFRKQLIRRNATDKILFKAPLFP
YISLFGIWIQVLCLVLTLFNDELRGAFYFGAPAMIIPCCIYFFVSKKKNTKIVQRTISLKKVF

Specific function: Putative transport protein involved in arginine degradative pathway. Probably transports arginine or ornithine [H]

COG id: COG0833

COG function: function code E; Amino acid transporters

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the amino acid-polyamine-organocation (APC) superfamily [H]

Homologues:

Organism=Escherichia coli, GI87081708, Length=455, Percent_Identity=31.8681318681319, Blast_Score=255, Evalue=5e-69,
Organism=Escherichia coli, GI1786789, Length=451, Percent_Identity=32.1507760532151, Blast_Score=225, Evalue=4e-60,
Organism=Escherichia coli, GI1788480, Length=432, Percent_Identity=33.1018518518519, Blast_Score=225, Evalue=5e-60,
Organism=Escherichia coli, GI1789017, Length=423, Percent_Identity=32.387706855792, Blast_Score=221, Evalue=1e-58,
Organism=Escherichia coli, GI1786302, Length=461, Percent_Identity=31.6702819956616, Blast_Score=209, Evalue=2e-55,
Organism=Escherichia coli, GI48994972, Length=452, Percent_Identity=30.7522123893805, Blast_Score=207, Evalue=2e-54,
Organism=Escherichia coli, GI1790653, Length=453, Percent_Identity=28.6975717439294, Blast_Score=199, Evalue=4e-52,
Organism=Escherichia coli, GI1786602, Length=454, Percent_Identity=28.6343612334802, Blast_Score=184, Evalue=1e-47,
Organism=Escherichia coli, GI87081915, Length=402, Percent_Identity=29.8507462686567, Blast_Score=175, Evalue=7e-45,
Organism=Escherichia coli, GI87082023, Length=365, Percent_Identity=22.4657534246575, Blast_Score=63, Evalue=4e-11,
Organism=Saccharomyces cerevisiae, GI6324061, Length=419, Percent_Identity=30.3102625298329, Blast_Score=189, Evalue=1e-48,
Organism=Saccharomyces cerevisiae, GI6320772, Length=438, Percent_Identity=28.310502283105, Blast_Score=186, Evalue=6e-48,
Organism=Saccharomyces cerevisiae, GI6324059, Length=424, Percent_Identity=28.7735849056604, Blast_Score=170, Evalue=5e-43,
Organism=Saccharomyces cerevisiae, GI6324990, Length=493, Percent_Identity=29.8174442190669, Blast_Score=159, Evalue=7e-40,
Organism=Saccharomyces cerevisiae, GI6324924, Length=436, Percent_Identity=25.6880733944954, Blast_Score=159, Evalue=1e-39,
Organism=Saccharomyces cerevisiae, GI6322892, Length=435, Percent_Identity=29.8850574712644, Blast_Score=155, Evalue=1e-38,
Organism=Saccharomyces cerevisiae, GI6322967, Length=430, Percent_Identity=27.906976744186, Blast_Score=145, Evalue=2e-35,
Organism=Saccharomyces cerevisiae, GI6324553, Length=417, Percent_Identity=27.0983213429257, Blast_Score=142, Evalue=1e-34,
Organism=Saccharomyces cerevisiae, GI6319824, Length=431, Percent_Identity=26.6821345707657, Blast_Score=141, Evalue=3e-34,
Organism=Saccharomyces cerevisiae, GI6321629, Length=435, Percent_Identity=25.2873563218391, Blast_Score=139, Evalue=7e-34,
Organism=Saccharomyces cerevisiae, GI6321053, Length=437, Percent_Identity=27.9176201372998, Blast_Score=135, Evalue=2e-32,
Organism=Saccharomyces cerevisiae, GI6320717, Length=432, Percent_Identity=26.1574074074074, Blast_Score=133, Evalue=6e-32,
Organism=Saccharomyces cerevisiae, GI6324981, Length=423, Percent_Identity=30.7328605200946, Blast_Score=132, Evalue=1e-31,
Organism=Saccharomyces cerevisiae, GI6319608, Length=433, Percent_Identity=25.635103926097, Blast_Score=123, Evalue=8e-29,
Organism=Saccharomyces cerevisiae, GI6319542, Length=432, Percent_Identity=24.7685185185185, Blast_Score=119, Evalue=7e-28,
Organism=Saccharomyces cerevisiae, GI6320251, Length=427, Percent_Identity=23.6533957845433, Blast_Score=118, Evalue=2e-27,
Organism=Saccharomyces cerevisiae, GI6320364, Length=508, Percent_Identity=23.8188976377953, Blast_Score=107, Evalue=4e-24,
Organism=Saccharomyces cerevisiae, GI6319543, Length=436, Percent_Identity=25, Blast_Score=106, Evalue=9e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004841
- InterPro:   IPR002293
- InterPro:   IPR004840 [H]

Pfam domain/function: PF00324 AA_permease [H]

EC number: NA

Molecular weight: Translated: 51244; Mature: 51113

Theoretical pI: Translated: 9.72; Mature: 9.72

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALAKTLKPRHIELIALGGIIGSCFFLGTGYVLAEVGPAAILAYILAGIIVYAVTLCLAE
CCCCCCCCCCCEEEEEEHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
LTANSPNSGSFIYYTAKYVSPAIACGMGWSYWLNWIIYIPSECIAGGIIMHTFLPAVPTY
HHCCCCCCCCEEEEEHHHHCHHHHHCCCHHHHHHHHHEECHHHHHHHHHHHHHHHHHHHH
MWATLFGLFITIINLTKVKIFGEIEFWLALVKIIALGLFSVIAILIFFDIIQNNTGGVLG
HHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
GTYIVSDGGFFPKGKLILITTMVILLVNFQGSEIIGLAASESNNAEKQMPRIAKHVAIRI
CEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHH
VGLYVIPVFLLATIFPWQKMSLSDSVFATALQYYHLDKFAAVFAFVVLVAAFSCANSGFY
HHHHHHHHHHHHHHCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
AAVRSLYGLSRARMAPSIFRKLNSSAIPHFAVYISIIAVWTFLILSFKLSASAAFTNLLA
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MSGFTATICWICICWSQYNFRKQLIRRNATDKILFKAPLFPYISLFGIWIQVLCLVLTLF
HCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHH
NDELRGAFYFGAPAMIIPCCIYFFVSKKKNTKIVQRTISLKKVF
HHHHCCEEEECCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure 
ALAKTLKPRHIELIALGGIIGSCFFLGTGYVLAEVGPAAILAYILAGIIVYAVTLCLAE
CCCCCCCCCCEEEEEEHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
LTANSPNSGSFIYYTAKYVSPAIACGMGWSYWLNWIIYIPSECIAGGIIMHTFLPAVPTY
HHCCCCCCCCEEEEEHHHHCHHHHHCCCHHHHHHHHHEECHHHHHHHHHHHHHHHHHHHH
MWATLFGLFITIINLTKVKIFGEIEFWLALVKIIALGLFSVIAILIFFDIIQNNTGGVLG
HHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
GTYIVSDGGFFPKGKLILITTMVILLVNFQGSEIIGLAASESNNAEKQMPRIAKHVAIRI
CEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHH
VGLYVIPVFLLATIFPWQKMSLSDSVFATALQYYHLDKFAAVFAFVVLVAAFSCANSGFY
HHHHHHHHHHHHHHCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
AAVRSLYGLSRARMAPSIFRKLNSSAIPHFAVYISIIAVWTFLILSFKLSASAAFTNLLA
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MSGFTATICWICICWSQYNFRKQLIRRNATDKILFKAPLFPYISLFGIWIQVLCLVLTLF
HCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHH
NDELRGAFYFGAPAMIIPCCIYFFVSKKKNTKIVQRTISLKKVF
HHHHCCEEEECCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377 [H]