Click here to switch to the map view.

The map label for this gene is yraN [C]

Identifier: 134302211

GI number: 134302211

Start: 1214084

End: 1214437

Strand: Direct

Name: yraN [C]

Synonym: FTW_1281

Alternate gene names: 134302211

Gene position: 1214084-1214437 (Clockwise)

Preceding gene: 134302210

Following gene: 134302219

Centisome position: 63.95

GC content: 32.2

Gene sequence:

>354_bases
ATGCAAACAATAGAAATAGGTAACAAAGCAGAACTACAAGCGTGTAAGTTTTTACACACTCAAGCATTAGAAATTCTAGC
TCATAACTTCAAAGCTTTACCATATGGTGAAATAGATATCATTGCTTTGGATAAAGATACTCTAGTCTTTATTGAAGTAA
AATATCGCAGTAAGACCAAATTTGCTCAAGCTGAGGAAATGCTGACCTATAGCAAGCAACAAAAACTTGTAAACAGTGCA
AGTATCTACTTACAACACAATCCTCAATACCAAGATTATCAGTGTCGTTTTGATTTAATTGCGATCAATGAAAGTAATAT
TAATTGGATAAAGAATGCTTTTGGAGTAATCTAA

Upstream 100 bases:

>100_bases
ACATAGTGGCATTAACTATAAGATTTACATTTAAGAAACTACCCTTCAAATTATTGAAACGGTGGCAACCAAAAACTGAC
AGGACAGCACAATAAAGAAA

Downstream 100 bases:

>100_bases
ATTTCTTCAGAAAGAGCAATTAATTTTTTAACTTGAAGTAGCTGATACTCATCAGTTTCATCATTTAAATTAAGGTTTAA
ATGACCTACTTTACGTCCCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 117; Mature: 117

Protein sequence:

>117_residues
MQTIEIGNKAELQACKFLHTQALEILAHNFKALPYGEIDIIALDKDTLVFIEVKYRSKTKFAQAEEMLTYSKQQKLVNSA
SIYLQHNPQYQDYQCRFDLIAINESNINWIKNAFGVI

Sequences:

>Translated_117_residues
MQTIEIGNKAELQACKFLHTQALEILAHNFKALPYGEIDIIALDKDTLVFIEVKYRSKTKFAQAEEMLTYSKQQKLVNSA
SIYLQHNPQYQDYQCRFDLIAINESNINWIKNAFGVI
>Mature_117_residues
MQTIEIGNKAELQACKFLHTQALEILAHNFKALPYGEIDIIALDKDTLVFIEVKYRSKTKFAQAEEMLTYSKQQKLVNSA
SIYLQHNPQYQDYQCRFDLIAINESNINWIKNAFGVI

Specific function: Unknown

COG id: COG0792

COG function: function code L; Predicted endonuclease distantly related to archaeal Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0102 family

Homologues:

Organism=Escherichia coli, GI1789538, Length=115, Percent_Identity=35.6521739130435, Blast_Score=86, Evalue=8e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1281_FRATW (A4IYQ8)

Other databases:

- EMBL:   CP000608
- RefSeq:   YP_001122180.1
- ProteinModelPortal:   A4IYQ8
- STRING:   A4IYQ8
- GeneID:   4960123
- GenomeReviews:   CP000608_GR
- KEGG:   ftw:FTW_1281
- eggNOG:   COG0792
- HOGENOM:   HBG710155
- OMA:   TEWIANA
- ProtClustDB:   PRK14682
- BioCyc:   FTUL418136:FTW_1281-MONOMER
- HAMAP:   MF_00048
- InterPro:   IPR011856
- InterPro:   IPR011335
- InterPro:   IPR003509
- Gene3D:   G3DSA:3.40.1350.10
- TIGRFAMs:   TIGR00252

Pfam domain/function: PF02021 UPF0102; SSF52980 Restrict_endonuc_II-like_core

EC number: NA

Molecular weight: Translated: 13544; Mature: 13544

Theoretical pI: Translated: 6.78; Mature: 6.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTIEIGNKAELQACKFLHTQALEILAHNFKALPYGEIDIIALDKDTLVFIEVKYRSKTK
CCEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCEEEEEEEEECCCCC
FAQAEEMLTYSKQQKLVNSASIYLQHNPQYQDYQCRFDLIAINESNINWIKNAFGVI
HHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCEEEEEEEEEEECCCCHHHHHHHCCC
>Mature Secondary Structure
MQTIEIGNKAELQACKFLHTQALEILAHNFKALPYGEIDIIALDKDTLVFIEVKYRSKTK
CCEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCEEEEEEEEECCCCC
FAQAEEMLTYSKQQKLVNSASIYLQHNPQYQDYQCRFDLIAINESNINWIKNAFGVI
HHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCEEEEEEEEEEECCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA