Click here to switch to the map view.

The map label for this gene is dppB [H]

Identifier: 134300292

GI number: 134300292

Start: 2667945

End: 2668949

Strand: Reverse

Name: dppB [H]

Synonym: Dred_2453

Alternate gene names: 134300292

Gene position: 2668949-2667945 (Counterclockwise)

Preceding gene: 134300293

Following gene: 134300291

Centisome position: 73.97

GC content: 47.16

Gene sequence:

>1005_bases
ATGCTCAGATATATAGCCAAAAGAATTATGCTGCTTGTTCCCGTTCTCTTTGGGGTCAGCCTTTTTGTTTTTTTAGTGCT
GCACCTTTTTACCACAGACCCTGCAGCCATGATGCTTGGGCAGCATGCCACCGCTGAACAAGTGGCGTCCCTGAGGGAAG
AATTGGGTTTCAACAAGCCATTGTATGTACAGTTTGGTGTTTTTATTAGCCAAATTATTCAGGGGGACTTTGGGATGTCT
TTAATGACCCGGTCTCCTGTCACAGATGAATTGCTCGCTCGTTTTCCGGCCACTGTGGAATTGGCCTTTGCTGCAATGCT
GATTGCCACCCTTATTGGAGTTACTGTTGGTGTAATCTCTGCAGTAAAACAGTATTCGATCTTTGATTATTTGAGCATGG
TGGGTGCGCTGTTGGGTGTTTCCATGCCCATCTTCTGGCTGGGTTTAATGCTGATTATTTTATTTTCCGTTACACTGGGC
TGGTTGCCTGTGTCCGGCCGCATCGAGGTGGGTATGGAACCGGCCACTATCACTCACTTCTACCTGATTGACAGCCTTTT
ATCCGGCAACTGGGAAGCCTTCAAATCATCTGTTAGTCACCTTGCTTTACCTGCCATTGCCCTATCTTCCTACTCAATGG
CCATTATTGCAAGGATGACTCGCTCTACCATGCTGGAGGTTATCCGTCAGGACTACATTCGTACGGCACGTTCCAAGGGA
CTGGTGGAAAGGGTGGTTGTGTTTAAACACGCCCTGCGGAATGCCTTAATTCCAGTCATCACGGTTATTGGTTTGCAAAT
GGGTTCCCTGCTGGGTGGTGCTGTCTTAACTGAAACGGTATTTTCCTGGCCTGGTATCGGTAGTTTTATTGTTAACGCTA
TCCTGGCCGGTGATTTTCCGGTAGTTCAGGGGGGCGTCATCATGGTTGCCACCGTCTTTGTTGTGGTGAACTTGATCGTG
GATATTCTTTATGCTTACCTAGATCCTAGAATTAAGTATTCCTAG

Upstream 100 bases:

>100_bases
CACGAATATGGCCCATGCCATATTCGTGTTTCAATGTTTTACGGTCAATAGGAAGAATTTAGTATTTTTATTACCCCTTG
CGAGGGAAAGAGGGAGATAA

Downstream 100 bases:

>100_bases
AATAGCCATGGGCCGTGAGCCATGAGCTAAAACCTAAAACCCAAGGCCCAAGGCCTACTCCAAAGAAATACCCATAAGAA
AGGAATTTGCGTATGCCGCA

Product: binding-protein-dependent transport systems inner membrane component

Products: ADP; phosphate; dipeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 334; Mature: 334

Protein sequence:

>334_residues
MLRYIAKRIMLLVPVLFGVSLFVFLVLHLFTTDPAAMMLGQHATAEQVASLREELGFNKPLYVQFGVFISQIIQGDFGMS
LMTRSPVTDELLARFPATVELAFAAMLIATLIGVTVGVISAVKQYSIFDYLSMVGALLGVSMPIFWLGLMLIILFSVTLG
WLPVSGRIEVGMEPATITHFYLIDSLLSGNWEAFKSSVSHLALPAIALSSYSMAIIARMTRSTMLEVIRQDYIRTARSKG
LVERVVVFKHALRNALIPVITVIGLQMGSLLGGAVLTETVFSWPGIGSFIVNAILAGDFPVVQGGVIMVATVFVVVNLIV
DILYAYLDPRIKYS

Sequences:

>Translated_334_residues
MLRYIAKRIMLLVPVLFGVSLFVFLVLHLFTTDPAAMMLGQHATAEQVASLREELGFNKPLYVQFGVFISQIIQGDFGMS
LMTRSPVTDELLARFPATVELAFAAMLIATLIGVTVGVISAVKQYSIFDYLSMVGALLGVSMPIFWLGLMLIILFSVTLG
WLPVSGRIEVGMEPATITHFYLIDSLLSGNWEAFKSSVSHLALPAIALSSYSMAIIARMTRSTMLEVIRQDYIRTARSKG
LVERVVVFKHALRNALIPVITVIGLQMGSLLGGAVLTETVFSWPGIGSFIVNAILAGDFPVVQGGVIMVATVFVVVNLIV
DILYAYLDPRIKYS
>Mature_334_residues
MLRYIAKRIMLLVPVLFGVSLFVFLVLHLFTTDPAAMMLGQHATAEQVASLREELGFNKPLYVQFGVFISQIIQGDFGMS
LMTRSPVTDELLARFPATVELAFAAMLIATLIGVTVGVISAVKQYSIFDYLSMVGALLGVSMPIFWLGLMLIILFSVTLG
WLPVSGRIEVGMEPATITHFYLIDSLLSGNWEAFKSSVSHLALPAIALSSYSMAIIARMTRSTMLEVIRQDYIRTARSKG
LVERVVVFKHALRNALIPVITVIGLQMGSLLGGAVLTETVFSWPGIGSFIVNAILAGDFPVVQGGVIMVATVFVVVNLIV
DILYAYLDPRIKYS

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789965, Length=338, Percent_Identity=47.6331360946746, Blast_Score=322, Evalue=2e-89,
Organism=Escherichia coli, GI1787053, Length=334, Percent_Identity=41.3173652694611, Blast_Score=278, Evalue=4e-76,
Organism=Escherichia coli, GI1787761, Length=326, Percent_Identity=48.159509202454, Blast_Score=261, Evalue=6e-71,
Organism=Escherichia coli, GI1789888, Length=335, Percent_Identity=40, Blast_Score=247, Evalue=8e-67,
Organism=Escherichia coli, GI1787550, Length=272, Percent_Identity=39.3382352941176, Blast_Score=199, Evalue=2e-52,
Organism=Escherichia coli, GI1787497, Length=335, Percent_Identity=32.8358208955224, Blast_Score=189, Evalue=2e-49,
Organism=Escherichia coli, GI1788504, Length=298, Percent_Identity=26.8456375838926, Blast_Score=118, Evalue=4e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 36487; Mature: 36487

Theoretical pI: Translated: 8.72; Mature: 8.72

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRYIAKRIMLLVPVLFGVSLFVFLVLHLFTTDPAAMMLGQHATAEQVASLREELGFNKP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHCCCCC
LYVQFGVFISQIIQGDFGMSLMTRSPVTDELLARFPATVELAFAAMLIATLIGVTVGVIS
HHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
AVKQYSIFDYLSMVGALLGVSMPIFWLGLMLIILFSVTLGWLPVSGRIEVGMEPATITHF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCHHHHHH
YLIDSLLSGNWEAFKSSVSHLALPAIALSSYSMAIIARMTRSTMLEVIRQDYIRTARSKG
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVERVVVFKHALRNALIPVITVIGLQMGSLLGGAVLTETVFSWPGIGSFIVNAILAGDFP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCC
VVQGGVIMVATVFVVVNLIVDILYAYLDPRIKYS
HHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MLRYIAKRIMLLVPVLFGVSLFVFLVLHLFTTDPAAMMLGQHATAEQVASLREELGFNKP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHCCCCC
LYVQFGVFISQIIQGDFGMSLMTRSPVTDELLARFPATVELAFAAMLIATLIGVTVGVIS
HHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
AVKQYSIFDYLSMVGALLGVSMPIFWLGLMLIILFSVTLGWLPVSGRIEVGMEPATITHF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCHHHHHH
YLIDSLLSGNWEAFKSSVSHLALPAIALSSYSMAIIARMTRSTMLEVIRQDYIRTARSKG
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVERVVVFKHALRNALIPVITVIGLQMGSLLGGAVLTETVFSWPGIGSFIVNAILAGDFP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCC
VVQGGVIMVATVFVVVNLIVDILYAYLDPRIKYS
HHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; dipeptides [Periplasm]; H2O [C]

Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9680333 [H]