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The map label for this gene is ybiR [C]

Identifier: 134299834

GI number: 134299834

Start: 2182597

End: 2183880

Strand: Reverse

Name: ybiR [C]

Synonym: Dred_1987

Alternate gene names: 134299834

Gene position: 2183880-2182597 (Counterclockwise)

Preceding gene: 134299835

Following gene: 134299833

Centisome position: 60.53

GC content: 43.15

Gene sequence:

>1284_bases
ATGGAAGGAAACAGTCAAGTCATTTTTGCTACGACCGTCTTTCTCGTTGCTTACGCAATTATTATTTCTGAAAAGATTCA
TCGGACGGTCGTTGCGTTGTTTGGCGCGATGATCTTAATCATTGCTGGCGTCTTACATCAGGAGAGGGCCGTTGAAGCCA
TTGACTTCAACACCATTGGTCTTTTGGTGGGGATGATGATTATTGTGGGTATTACTAGGCGCTCAGGTGTTTTTGAGTAT
CTTGCCGTGAAGGCGGCCAAACAAAGTAAAGGTGAACCCTTAGCCATATTAGTAGCCTTGTCTGTAATTACTGCCGTTTT
ATCAGCCCTATTGGACAATGTTACTACCGTGCTTTTGATTGTTCCCGTTACTTTCTCCATTGCCAGAGCCTTGGAAATTA
ACCCTATGCCAATCTTAATATCAGAAGTTTTATCTTCTAATATTGGGGGTACAGCTACTCTGATTGGCGACCCGCCAAAT
ATTATGATTGGTTCTGCCGTTGGTCTTGGTTTTATGGATTTTGTGGTTAATCTAGCACCTGTAGTAATAGTTATTATGGT
TGTTACCATTTATCTTTTGAAATGGATTTACCGTAAGGAATTTGTGGTTCGGGAAGAGTTAAAGCAAAACATTTTAGCCA
TGAATGAAAATGATGAAATTAAGGATGCTAAACTTCTTAAAAAGGCTTTGTTTGTTCTGGCATTAACCATTGGCGGATTC
CTACTGCACCAGTATGCGCATCTAGAATCGGCTACCATTGCGCTGGCTGGTGCAGCCCTGCTGTTGCTATTAACTGGTGA
GGAACCAGAACATGCCTTGGAGGCTGTGGAATGGCCTGTCATCTTCTTCTTTGCTGGATTGTTCATTCTGGTTGGCGGTC
TGGAAGAGGTTGGTGTCATTGAATGGATTGCCGCAAAGGCATTGGAAATAACCGGTGGGGAATTGCTTACCACAGGTATG
TTAATCCTTTGGCTGTCTGCCATAGCCTCAGCCTTTGTGGATAATATCCCCTTTGTGGCTACCATGATTCCGTTGATTCA
AGATATGGGACGTTTAGGCGGTATGACTAACCTTGACCCCCTCTGGTGGTCTTTGGCCCTAGGGGCCTGTCTGGGCGGCA
ATGGAACAATTATTGGTGCTTCTGCTAACGTGGTGGTGGTTGGAATGGCCGAGAAACAAGGAATGAAATTTACTTTCCTT
GGCTTTATGAAAGTGGCCTTTCCCTTAATGATAGTATCCATCATCATTTCTTCTACTTATCTATATTTCTTCTACTTAAC
ATAA

Upstream 100 bases:

>100_bases
CGACAACATTCTTGTAAAGGGATATTGATAGGATTATAATATTCATGGCAGTGTATAAGGGACTGATGGTCACACCAAAT
ACTAGGAGAGGGGATATATT

Downstream 100 bases:

>100_bases
AATTCTTTTTATAGCCCGGCATCTTTGCCGGGCTATAATTTTTTTAAAGATGGGGACAAAATATAAAAAGTGAAGGGAGG
CGTAAAGGTGAGCACTATAT

Product: citrate transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 427; Mature: 427

Protein sequence:

>427_residues
MEGNSQVIFATTVFLVAYAIIISEKIHRTVVALFGAMILIIAGVLHQERAVEAIDFNTIGLLVGMMIIVGITRRSGVFEY
LAVKAAKQSKGEPLAILVALSVITAVLSALLDNVTTVLLIVPVTFSIARALEINPMPILISEVLSSNIGGTATLIGDPPN
IMIGSAVGLGFMDFVVNLAPVVIVIMVVTIYLLKWIYRKEFVVREELKQNILAMNENDEIKDAKLLKKALFVLALTIGGF
LLHQYAHLESATIALAGAALLLLLTGEEPEHALEAVEWPVIFFFAGLFILVGGLEEVGVIEWIAAKALEITGGELLTTGM
LILWLSAIASAFVDNIPFVATMIPLIQDMGRLGGMTNLDPLWWSLALGACLGGNGTIIGASANVVVVGMAEKQGMKFTFL
GFMKVAFPLMIVSIIISSTYLYFFYLT

Sequences:

>Translated_427_residues
MEGNSQVIFATTVFLVAYAIIISEKIHRTVVALFGAMILIIAGVLHQERAVEAIDFNTIGLLVGMMIIVGITRRSGVFEY
LAVKAAKQSKGEPLAILVALSVITAVLSALLDNVTTVLLIVPVTFSIARALEINPMPILISEVLSSNIGGTATLIGDPPN
IMIGSAVGLGFMDFVVNLAPVVIVIMVVTIYLLKWIYRKEFVVREELKQNILAMNENDEIKDAKLLKKALFVLALTIGGF
LLHQYAHLESATIALAGAALLLLLTGEEPEHALEAVEWPVIFFFAGLFILVGGLEEVGVIEWIAAKALEITGGELLTTGM
LILWLSAIASAFVDNIPFVATMIPLIQDMGRLGGMTNLDPLWWSLALGACLGGNGTIIGASANVVVVGMAEKQGMKFTFL
GFMKVAFPLMIVSIIISSTYLYFFYLT
>Mature_427_residues
MEGNSQVIFATTVFLVAYAIIISEKIHRTVVALFGAMILIIAGVLHQERAVEAIDFNTIGLLVGMMIIVGITRRSGVFEY
LAVKAAKQSKGEPLAILVALSVITAVLSALLDNVTTVLLIVPVTFSIARALEINPMPILISEVLSSNIGGTATLIGDPPN
IMIGSAVGLGFMDFVVNLAPVVIVIMVVTIYLLKWIYRKEFVVREELKQNILAMNENDEIKDAKLLKKALFVLALTIGGF
LLHQYAHLESATIALAGAALLLLLTGEEPEHALEAVEWPVIFFFAGLFILVGGLEEVGVIEWIAAKALEITGGELLTTGM
LILWLSAIASAFVDNIPFVATMIPLIQDMGRLGGMTNLDPLWWSLALGACLGGNGTIIGASANVVVVGMAEKQGMKFTFL
GFMKVAFPLMIVSIIISSTYLYFFYLT

Specific function: Unknown

COG id: COG1055

COG function: function code P; Na+/H+ antiporter NhaD and related arsenite permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CitM (TC 2.A.11) transporter family [H]

Homologues:

Organism=Homo sapiens, GI157266326, Length=501, Percent_Identity=36.3273453093812, Blast_Score=259, Evalue=4e-69,
Organism=Escherichia coli, GI1787039, Length=355, Percent_Identity=25.0704225352113, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI87082277, Length=319, Percent_Identity=24.4514106583072, Blast_Score=69, Evalue=7e-13,
Organism=Drosophila melanogaster, GI28574683, Length=495, Percent_Identity=37.979797979798, Blast_Score=269, Evalue=3e-72,
Organism=Drosophila melanogaster, GI28574681, Length=495, Percent_Identity=37.979797979798, Blast_Score=269, Evalue=3e-72,
Organism=Drosophila melanogaster, GI28574685, Length=495, Percent_Identity=37.979797979798, Blast_Score=269, Evalue=3e-72,
Organism=Drosophila melanogaster, GI28574678, Length=495, Percent_Identity=37.979797979798, Blast_Score=269, Evalue=3e-72,
Organism=Drosophila melanogaster, GI24581759, Length=495, Percent_Identity=37.979797979798, Blast_Score=269, Evalue=3e-72,
Organism=Drosophila melanogaster, GI19920704, Length=495, Percent_Identity=37.979797979798, Blast_Score=268, Evalue=4e-72,
Organism=Drosophila melanogaster, GI45550608, Length=478, Percent_Identity=33.0543933054393, Blast_Score=201, Evalue=1e-51,
Organism=Drosophila melanogaster, GI221472711, Length=497, Percent_Identity=28.3702213279678, Blast_Score=191, Evalue=6e-49,
Organism=Drosophila melanogaster, GI24581764, Length=497, Percent_Identity=28.3702213279678, Blast_Score=189, Evalue=3e-48,
Organism=Drosophila melanogaster, GI85724998, Length=470, Percent_Identity=26.8085106382979, Blast_Score=161, Evalue=8e-40,
Organism=Drosophila melanogaster, GI62484377, Length=471, Percent_Identity=27.8131634819533, Blast_Score=160, Evalue=1e-39,
Organism=Drosophila melanogaster, GI24656008, Length=480, Percent_Identity=27.9166666666667, Blast_Score=135, Evalue=5e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000802
- InterPro:   IPR004680 [H]

Pfam domain/function: PF03600 CitMHS [H]

EC number: NA

Molecular weight: Translated: 45927; Mature: 45927

Theoretical pI: Translated: 4.72; Mature: 4.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEGNSQVIFATTVFLVAYAIIISEKIHRTVVALFGAMILIIAGVLHQERAVEAIDFNTIG
CCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
LLVGMMIIVGITRRSGVFEYLAVKAAKQSKGEPLAILVALSVITAVLSALLDNVTTVLLI
HHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
VPVTFSIARALEINPMPILISEVLSSNIGGTATLIGDPPNIMIGSAVGLGFMDFVVNLAP
HHHHHHHHHHHCCCCCHHHHHHHHCCCCCCEEEEECCCCCEEEECHHHHHHHHHHHHHHH
VVIVIMVVTIYLLKWIYRKEFVVREELKQNILAMNENDEIKDAKLLKKALFVLALTIGGF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHH
LLHQYAHLESATIALAGAALLLLLTGEEPEHALEAVEWPVIFFFAGLFILVGGLEEVGVI
HHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
EWIAAKALEITGGELLTTGMLILWLSAIASAFVDNIPFVATMIPLIQDMGRLGGMTNLDP
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCH
LWWSLALGACLGGNGTIIGASANVVVVGMAEKQGMKFTFLGFMKVAFPLMIVSIIISSTY
HHHHHHHHHHCCCCCEEEECCCCEEEEEECCCCCCEEHHHHHHHHHHHHHHHHHHHHHHH
LYFFYLT
HEEEEEC
>Mature Secondary Structure
MEGNSQVIFATTVFLVAYAIIISEKIHRTVVALFGAMILIIAGVLHQERAVEAIDFNTIG
CCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
LLVGMMIIVGITRRSGVFEYLAVKAAKQSKGEPLAILVALSVITAVLSALLDNVTTVLLI
HHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
VPVTFSIARALEINPMPILISEVLSSNIGGTATLIGDPPNIMIGSAVGLGFMDFVVNLAP
HHHHHHHHHHHCCCCCHHHHHHHHCCCCCCEEEEECCCCCEEEECHHHHHHHHHHHHHHH
VVIVIMVVTIYLLKWIYRKEFVVREELKQNILAMNENDEIKDAKLLKKALFVLALTIGGF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHH
LLHQYAHLESATIALAGAALLLLLTGEEPEHALEAVEWPVIFFFAGLFILVGGLEEVGVI
HHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
EWIAAKALEITGGELLTTGMLILWLSAIASAFVDNIPFVATMIPLIQDMGRLGGMTNLDP
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCH
LWWSLALGACLGGNGTIIGASANVVVVGMAEKQGMKFTFLGFMKVAFPLMIVSIIISSTY
HHHHHHHHHHCCCCCEEEECCCCEEEEEECCCCCCEEHHHHHHHHHHHHHHHHHHHHHHH
LYFFYLT
HEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]