| Definition | Desulfotomaculum reducens MI-1 chromosome, complete genome. |
|---|---|
| Accession | NC_009253 |
| Length | 3,608,104 |
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The map label for this gene is 134299695
Identifier: 134299695
GI number: 134299695
Start: 2020692
End: 2022542
Strand: Reverse
Name: 134299695
Synonym: Dred_1841
Alternate gene names: NA
Gene position: 2022542-2020692 (Counterclockwise)
Preceding gene: 134299696
Following gene: 134299694
Centisome position: 56.06
GC content: 37.33
Gene sequence:
>1851_bases ATGAACAAAGGGCTTAATGAAAAGGACCAATTTGTCAGAATAAGTTCTATGCTGGATGCCAGTGTAATGAAGATTACTAT TTTTGCTACGGTGATTATAGTATTTTCTATGTTGCTGGTAGGGGCCATTGCCTATACTATTACAGAAAAGGAAATAGTCA ACAAACTTAAAACAAAGGACTTAGTTAATATTGCCGAAGCAATTTCTGCTAAAATAGATGGACGAATTGAACGGGCTAAG GAAACGTCTATTTTACTTGCAAAGGATCCCGAAATAATCAACTGGGTTTCAAGTGCAGAAAAAAATAAGGTTGCTGAACA AAACTCATTGTTAAGAATAGCAAAACTGGCCAGGGAACATGACTACAGCAATTCCTTTATAGTCAGCAATGTTACAAAAC ACTACTGGGATGAGAACTGCCAAATAATTGATACCATGTTAGAAAATGATCCTGATGATAGTTGGTTTTTTGATGTAACA AAATCAAACAAACCGGTTTCTTTGGTGATAGACTACAATAACGAAAGAAAAGATACCTTTGTCTTTGTCAACGCTTTAAT GGGTGATGTTAAAAAACCACTGGCAGTGGTAGGTGTGGGTTTGAGTCTCGGGGAGTTGTCCAAGGACTTTCAAAGTTTTA AGTACGGTGAAAAGAGTGATCTATGGTTAGTAGATAATAAAGGGAATATTTATCTCTCTGATAATATTAATCATAATGGC AAAAATATTAGTAAGATTTTACCTATGAAGATTGCCAGCACACTCCTTAGGAATATAGATTCAAGTCATAAAGTTTCCTC TACACTGGAATACCAAGATTCTAAGGGGGCCCTCGTTGATATCATAAGCTATCCGATAAAATCTTCCGATTGGAAACTGT TGGTACAAATCCCCAGAAGTGAATCAGTTTCCTTGTTAAATACTATCAAATTCAATACTTTATCCGCAACGGGAATTACC CTTATTGCTATCACGATCTTCTTTTTCTTAATCTCACGCTACCTGGCAAATCCTTATAAAAGGACATTGCAGTTAAATCA GGAACTTGAAGCAAAGATAACTGAAAGAACCAAAGAGCTGTTTGAAAAAAATAGTAAACTAATGGACAGCATAGATTACG CTAAAAGAATTCAAGAATCCACTCTACCTTCTCCCGGGAAACTGACGGACTTGTTTAAAGATCACTTTTTGCTGTGGCGA CCAAAGGACTTGGTGGGCGGAGATTTTTACTGGACTAAAAAATTCAATAAAGACTACCTTGTGGCTGTTGGAGACTGTAC CGGACATGGTGTCCCCGGGGCGTTTATGACTATGCTAACTGTTTCGATACTAAATCAGATTGCCGACCTTAACACTAAGG GCGACCCGGCTTTACTTCTTAAGAAGCTTAATGTTTTAATCAAACAGACATTGAATCAGGAAACGGAGGATGCCCTTACT GACGATGGGTTGGATATTGGTCTATGCTATTTTGATGGTTCTAACCACCTCATCTTTGCGGGAGCTAAAATGTCCCTTTT TATACGAAACAGTAAAGGCATAGAGATTATTCAAGGAAATAAAAAGAGTATCGGCTATATTCGTACTGCTCCGGACTACC CCTATACTAATTCCAAAATAGATATAGAGAGCGGGGATCTTTTCTACCTGACAACGGATGGCTACCTTGATCAAAACGGT GGCTTAAAAGACTATTCCTTTGGGAAAAATCGTTTTCTGAACATGATAGAGCATTGTAACAACAGGGATTTATCTAAACA GGGCAAAGTCTTTCTTAATGAATTATTGAATTACATGGGTGAAAAGCCTCAAAGAGATGATATTACGGTAATAGGTTTTA GAATAAGCTAA
Upstream 100 bases:
>100_bases AGCATGGTCAACAAAGGAAGTACCTTTTATTTTTCTCTTCCGATATCTGTGCAGCATAAATCGTATTAAACTATAATTTA AAATTTTGGGAGTAACCGTA
Downstream 100 bases:
>100_bases TACAAACTAAATTGAAGGGATGATTGCATGAGAGGCCACTATGAACAAGTGTTTCAAAATGAAATGCAACTTCTCCTGAC GTGTCAAAAAGATCTTAATA
Product: stage II sporulation E family protein
Products: NA
Alternate protein names: Serine Phosphatase; Methyl-Accepting Chemotaxis Protein; Stage II Sporulation Protein E; Diguanylate Cyclase; Methyl-Accepting Chemotaxis Sensory Transducer; Stage II Sporulation E Family Protein; Serine/Threonine Kinase; Serine Phosphatase RsbU Regulator Of Sigma Subunit; Sigma Factor SigB Regulation Protein RsbU; Phosphoserine Phosphatase; Bacterial Signal Domain Protein; Phosphatase; Signal Domain Protein; Serine Phosphatase RsbU; Pas/Pac Sensor Protein; Signal Transduction Protein; Response Regulator Receiver Modulated Serine Phosphatase; Serine/Threonine Protein Kinase; Serine Phosphatase Regulator Of Sigma Subunit; Transcriptional Regulator Protein; Chemotaxis Sensory Transducer; ATPase/Protein Kinase; HAMP Domain-Containing; Protein Phosphatase; Sensor Kinase; PAS/PAC Sensor Protein; GGDEF Family Protein
Number of amino acids: Translated: 616; Mature: 616
Protein sequence:
>616_residues MNKGLNEKDQFVRISSMLDASVMKITIFATVIIVFSMLLVGAIAYTITEKEIVNKLKTKDLVNIAEAISAKIDGRIERAK ETSILLAKDPEIINWVSSAEKNKVAEQNSLLRIAKLAREHDYSNSFIVSNVTKHYWDENCQIIDTMLENDPDDSWFFDVT KSNKPVSLVIDYNNERKDTFVFVNALMGDVKKPLAVVGVGLSLGELSKDFQSFKYGEKSDLWLVDNKGNIYLSDNINHNG KNISKILPMKIASTLLRNIDSSHKVSSTLEYQDSKGALVDIISYPIKSSDWKLLVQIPRSESVSLLNTIKFNTLSATGIT LIAITIFFFLISRYLANPYKRTLQLNQELEAKITERTKELFEKNSKLMDSIDYAKRIQESTLPSPGKLTDLFKDHFLLWR PKDLVGGDFYWTKKFNKDYLVAVGDCTGHGVPGAFMTMLTVSILNQIADLNTKGDPALLLKKLNVLIKQTLNQETEDALT DDGLDIGLCYFDGSNHLIFAGAKMSLFIRNSKGIEIIQGNKKSIGYIRTAPDYPYTNSKIDIESGDLFYLTTDGYLDQNG GLKDYSFGKNRFLNMIEHCNNRDLSKQGKVFLNELLNYMGEKPQRDDITVIGFRIS
Sequences:
>Translated_616_residues MNKGLNEKDQFVRISSMLDASVMKITIFATVIIVFSMLLVGAIAYTITEKEIVNKLKTKDLVNIAEAISAKIDGRIERAK ETSILLAKDPEIINWVSSAEKNKVAEQNSLLRIAKLAREHDYSNSFIVSNVTKHYWDENCQIIDTMLENDPDDSWFFDVT KSNKPVSLVIDYNNERKDTFVFVNALMGDVKKPLAVVGVGLSLGELSKDFQSFKYGEKSDLWLVDNKGNIYLSDNINHNG KNISKILPMKIASTLLRNIDSSHKVSSTLEYQDSKGALVDIISYPIKSSDWKLLVQIPRSESVSLLNTIKFNTLSATGIT LIAITIFFFLISRYLANPYKRTLQLNQELEAKITERTKELFEKNSKLMDSIDYAKRIQESTLPSPGKLTDLFKDHFLLWR PKDLVGGDFYWTKKFNKDYLVAVGDCTGHGVPGAFMTMLTVSILNQIADLNTKGDPALLLKKLNVLIKQTLNQETEDALT DDGLDIGLCYFDGSNHLIFAGAKMSLFIRNSKGIEIIQGNKKSIGYIRTAPDYPYTNSKIDIESGDLFYLTTDGYLDQNG GLKDYSFGKNRFLNMIEHCNNRDLSKQGKVFLNELLNYMGEKPQRDDITVIGFRIS >Mature_616_residues MNKGLNEKDQFVRISSMLDASVMKITIFATVIIVFSMLLVGAIAYTITEKEIVNKLKTKDLVNIAEAISAKIDGRIERAK ETSILLAKDPEIINWVSSAEKNKVAEQNSLLRIAKLAREHDYSNSFIVSNVTKHYWDENCQIIDTMLENDPDDSWFFDVT KSNKPVSLVIDYNNERKDTFVFVNALMGDVKKPLAVVGVGLSLGELSKDFQSFKYGEKSDLWLVDNKGNIYLSDNINHNG KNISKILPMKIASTLLRNIDSSHKVSSTLEYQDSKGALVDIISYPIKSSDWKLLVQIPRSESVSLLNTIKFNTLSATGIT LIAITIFFFLISRYLANPYKRTLQLNQELEAKITERTKELFEKNSKLMDSIDYAKRIQESTLPSPGKLTDLFKDHFLLWR PKDLVGGDFYWTKKFNKDYLVAVGDCTGHGVPGAFMTMLTVSILNQIADLNTKGDPALLLKKLNVLIKQTLNQETEDALT DDGLDIGLCYFDGSNHLIFAGAKMSLFIRNSKGIEIIQGNKKSIGYIRTAPDYPYTNSKIDIESGDLFYLTTDGYLDQNG GLKDYSFGKNRFLNMIEHCNNRDLSKQGKVFLNELLNYMGEKPQRDDITVIGFRIS
Specific function: Unknown
COG id: COG2208
COG function: function code TK; Serine phosphatase RsbU, regulator of sigma subunit
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 69503; Mature: 69503
Theoretical pI: Translated: 7.23; Mature: 7.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKGLNEKDQFVRISSMLDASVMKITIFATVIIVFSMLLVGAIAYTITEKEIVNKLKTKD CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LVNIAEAISAKIDGRIERAKETSILLAKDPEIINWVSSAEKNKVAEQNSLLRIAKLAREH HHHHHHHHHHHHCCHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC DYSNSFIVSNVTKHYWDENCQIIDTMLENDPDDSWFFDVTKSNKPVSLVIDYNNERKDTF CCCCCEEEHHHHHHHCCCCCHHHHHHHCCCCCCCEEEEEECCCCCEEEEEECCCCCCHHH VFVNALMGDVKKPLAVVGVGLSLGELSKDFQSFKYGEKSDLWLVDNKGNIYLSDNINHNG EEHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHCCCCCCCEEEEECCCCEEEECCCCCCC KNISKILPMKIASTLLRNIDSSHKVSSTLEYQDSKGALVDIISYPIKSSDWKLLVQIPRS CCHHHHHHHHHHHHHHHHCCCCHHHHHHEEECCCCCCEEEEECCCCCCCCCEEEEEECCC ESVSLLNTIKFNTLSATGITLIAITIFFFLISRYLANPYKRTLQLNQELEAKITERTKEL CCCHHHHHEEECEECCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHCHHHHHHHHHHHHHH FEKNSKLMDSIDYAKRIQESTLPSPGKLTDLFKDHFLLWRPKDLVGGDFYWTKKFNKDYL HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCEEEECCCHHCCCCEEEEEECCCCEE VAVGDCTGHGVPGAFMTMLTVSILNQIADLNTKGDPALLLKKLNVLIKQTLNQETEDALT EEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHC DDGLDIGLCYFDGSNHLIFAGAKMSLFIRNSKGIEIIQGNKKSIGYIRTAPDYPYTNSKI CCCCEEEEEEEECCCEEEEECCEEEEEEECCCCEEEEECCCCCCCEEEECCCCCCCCCEE DIESGDLFYLTTDGYLDQNGGLKDYSFGKNRFLNMIEHCNNRDLSKQGKVFLNELLNYMG EECCCCEEEEEECCEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHC EKPQRDDITVIGFRIS CCCCCCCEEEEEEEEC >Mature Secondary Structure MNKGLNEKDQFVRISSMLDASVMKITIFATVIIVFSMLLVGAIAYTITEKEIVNKLKTKD CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LVNIAEAISAKIDGRIERAKETSILLAKDPEIINWVSSAEKNKVAEQNSLLRIAKLAREH HHHHHHHHHHHHCCHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC DYSNSFIVSNVTKHYWDENCQIIDTMLENDPDDSWFFDVTKSNKPVSLVIDYNNERKDTF CCCCCEEEHHHHHHHCCCCCHHHHHHHCCCCCCCEEEEEECCCCCEEEEEECCCCCCHHH VFVNALMGDVKKPLAVVGVGLSLGELSKDFQSFKYGEKSDLWLVDNKGNIYLSDNINHNG EEHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHCCCCCCCEEEEECCCCEEEECCCCCCC KNISKILPMKIASTLLRNIDSSHKVSSTLEYQDSKGALVDIISYPIKSSDWKLLVQIPRS CCHHHHHHHHHHHHHHHHCCCCHHHHHHEEECCCCCCEEEEECCCCCCCCCEEEEEECCC ESVSLLNTIKFNTLSATGITLIAITIFFFLISRYLANPYKRTLQLNQELEAKITERTKEL CCCHHHHHEEECEECCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHCHHHHHHHHHHHHHH FEKNSKLMDSIDYAKRIQESTLPSPGKLTDLFKDHFLLWRPKDLVGGDFYWTKKFNKDYL HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCEEEECCCHHCCCCEEEEEECCCCEE VAVGDCTGHGVPGAFMTMLTVSILNQIADLNTKGDPALLLKKLNVLIKQTLNQETEDALT EEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHC DDGLDIGLCYFDGSNHLIFAGAKMSLFIRNSKGIEIIQGNKKSIGYIRTAPDYPYTNSKI CCCCEEEEEEEECCCEEEEECCEEEEEEECCCCEEEEECCCCCCCEEEECCCCCCCCCEE DIESGDLFYLTTDGYLDQNGGLKDYSFGKNRFLNMIEHCNNRDLSKQGKVFLNELLNYMG EECCCCEEEEEECCEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHC EKPQRDDITVIGFRIS CCCCCCCEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA