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The map label for this gene is ycjC [C]

Identifier: 134298754

GI number: 134298754

Start: 948103

End: 948735

Strand: Reverse

Name: ycjC [C]

Synonym: Dred_0889

Alternate gene names: 134298754

Gene position: 948735-948103 (Counterclockwise)

Preceding gene: 134298756

Following gene: 134298752

Centisome position: 26.29

GC content: 37.28

Gene sequence:

>633_bases
ATGAAACTTGGTCAGAGACTAAAGTCAATGCGGGAACAACAGAATATCAGCATGAACATGGTAGCTAAGCGTGCCGATAT
TGCGCAGAGTACATTAAGTCGTATTGAATCAGGGCAGCAGATGCCAACTTTTGACGTACTTGAACGTATTATTACTGCCT
TGGGTCTCACACTTGCAGATTTCTTTTCCGAAGATAATAAAAATTTTACTGTACCTGATAATATCAAAGACTTGGTCACA
GACTTGAAAAATTTGCGCTCTACCCAAGTTACTTTAATAAGAAATATTATTGCCGAATTTTCATTAACTAATCAGCAACT
TAATAAAGCTACATCAAAGGATTTAAGCAGTGAATTATTAGATCTATTTACTTCAAAAAACAAATCTCTAACACTGGCCG
GTAAGCCTATATCATTAGAAGAAAGAATTCAGATCCTAGAGGCTTTAAGAGATATCCTTTCCCAAGAAGAAACACCAACT
AACGAAGATGACGAAGTTCTTGTAGCCAGCTACGAAGGTGACCAGTTATTTCATCTACCCACTCCAGAAGAGGCTGAAGA
CATTCAAAGGGCTATAAAAGCAGCGATGGAGCAAAAGAGAAAAGACCAAAGCAATAATAACCAGTCAGAATAA

Upstream 100 bases:

>100_bases
TTATGCTAATACGCATTAGAGGTCAATGCGTATTAACATAATTATGTTAAAAAAATATAAGTTATAATGCAAATAAGCAT
ATTTTTTAGGATGATGAAAA

Downstream 100 bases:

>100_bases
AGAAACTACTAACCTTATATGTAAGGTTACCTGCCCAGGTAGGCTCAAAGCATAATTGACATATACCCAAGGTGTCCGGA
CGCAGACTGGCAACAAGGCA

Product: XRE family transcriptional regulator

Products: NA

Alternate protein names: Helix-Turn-Helix Domain-Containing Protein; Transcriptional Regulator XRE Family; Helix-Turn-Helix Domain Protein

Number of amino acids: Translated: 210; Mature: 210

Protein sequence:

>210_residues
MKLGQRLKSMREQQNISMNMVAKRADIAQSTLSRIESGQQMPTFDVLERIITALGLTLADFFSEDNKNFTVPDNIKDLVT
DLKNLRSTQVTLIRNIIAEFSLTNQQLNKATSKDLSSELLDLFTSKNKSLTLAGKPISLEERIQILEALRDILSQEETPT
NEDDEVLVASYEGDQLFHLPTPEEAEDIQRAIKAAMEQKRKDQSNNNQSE

Sequences:

>Translated_210_residues
MKLGQRLKSMREQQNISMNMVAKRADIAQSTLSRIESGQQMPTFDVLERIITALGLTLADFFSEDNKNFTVPDNIKDLVT
DLKNLRSTQVTLIRNIIAEFSLTNQQLNKATSKDLSSELLDLFTSKNKSLTLAGKPISLEERIQILEALRDILSQEETPT
NEDDEVLVASYEGDQLFHLPTPEEAEDIQRAIKAAMEQKRKDQSNNNQSE
>Mature_210_residues
MKLGQRLKSMREQQNISMNMVAKRADIAQSTLSRIESGQQMPTFDVLERIITALGLTLADFFSEDNKNFTVPDNIKDLVT
DLKNLRSTQVTLIRNIIAEFSLTNQQLNKATSKDLSSELLDLFTSKNKSLTLAGKPISLEERIQILEALRDILSQEETPT
NEDDEVLVASYEGDQLFHLPTPEEAEDIQRAIKAAMEQKRKDQSNNNQSE

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23756; Mature: 23756

Theoretical pI: Translated: 4.54; Mature: 4.54

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLGQRLKSMREQQNISMNMVAKRADIAQSTLSRIESGQQMPTFDVLERIITALGLTLAD
CCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
FFSEDNKNFTVPDNIKDLVTDLKNLRSTQVTLIRNIIAEFSLTNQQLNKATSKDLSSELL
HHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DLFTSKNKSLTLAGKPISLEERIQILEALRDILSQEETPTNEDDEVLVASYEGDQLFHLP
HHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCEEEECC
TPEEAEDIQRAIKAAMEQKRKDQSNNNQSE
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MKLGQRLKSMREQQNISMNMVAKRADIAQSTLSRIESGQQMPTFDVLERIITALGLTLAD
CCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
FFSEDNKNFTVPDNIKDLVTDLKNLRSTQVTLIRNIIAEFSLTNQQLNKATSKDLSSELL
HHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DLFTSKNKSLTLAGKPISLEERIQILEALRDILSQEETPTNEDDEVLVASYEGDQLFHLP
HHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCEEEECC
TPEEAEDIQRAIKAAMEQKRKDQSNNNQSE
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA