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The map label for this gene is ycjC [C]

Identifier: 134298752

GI number: 134298752

Start: 946674

End: 947330

Strand: Reverse

Name: ycjC [C]

Synonym: Dred_0887

Alternate gene names: 134298752

Gene position: 947330-946674 (Counterclockwise)

Preceding gene: 134298754

Following gene: 134298751

Centisome position: 26.26

GC content: 40.94

Gene sequence:

>657_bases
ATGGATATTGGCGCCCGGATAAGAATACTTAGAACACAACAAGGATTAAGTATGAACGAGCTTTCCCGACGTTCAGGCGT
AGGGCAGTCTTCTCTTAGTTATATAGAAAGTGGCCAACGTCAACCCACTTTCGATGTAATTGAACGTATTTGCAGTGGAC
TTGGGTTGTCGGTAGCAGAATTTTTTAACGAAGGTTTTATGCCATGTCCCTATTCTAGCGACATAAATAGTCTTGTTAAT
GAAGTTCAAAACCTAAAGCCGTCTCAGGTTTCACTGATTAAAAATATTGCTACTGAATTCTCAGTAACTAATGAAGAACT
TGAATTGGCAGCCAAAAAATCGTTATCAACTATTGCCAATAGAGAATCTGCTTCTGGAGTTTTACATATCGACCTCTTAG
ACGTATTTGGCAGAAAAGACACCGTCCTATCCGCAGCCGGTGTCCCCCTTTCGTTGGAGGATAGGATTGAGATATTAGAA
TTAATTAAAGAAAAGCTACCGGCTGATGAGGACCTAGATTACGAAAATAATGAGGTTATAGCAGCCAGCTACCAGGGCAA
CCGGTTCGCTCACATCCCCACCCAAGAAGAAGCGGAGGATATTGAGCTTGCATTTAAGCTTGCTGAACAACAAAAAAATA
GGAAACACAAGAAATAA

Upstream 100 bases:

>100_bases
ATCCTATATAGGATAGGTAGTCAACCCCGTTTTAGGATAATCGTTTCCCTATCTTTTATGTTATAATCCGAATAAGGATA
ATACCTTGAGGGAGTATATT

Downstream 100 bases:

>100_bases
AGAAACTACTATACCCAGTAATTTTGATAGCGTTACACCAAGACCATCGGCTAATTTCTCTACTGTTTGTAATCCAGGGT
TCCGTTCCCCATTTTCAATA

Product: XRE family transcriptional regulator

Products: NA

Alternate protein names: Helix-Turn-Helix Domain Protein; Helix-Turn-Helix Domain-Containing Protein; Transcriptional Regulator XRE Family

Number of amino acids: Translated: 218; Mature: 218

Protein sequence:

>218_residues
MDIGARIRILRTQQGLSMNELSRRSGVGQSSLSYIESGQRQPTFDVIERICSGLGLSVAEFFNEGFMPCPYSSDINSLVN
EVQNLKPSQVSLIKNIATEFSVTNEELELAAKKSLSTIANRESASGVLHIDLLDVFGRKDTVLSAAGVPLSLEDRIEILE
LIKEKLPADEDLDYENNEVIAASYQGNRFAHIPTQEEAEDIELAFKLAEQQKNRKHKK

Sequences:

>Translated_218_residues
MDIGARIRILRTQQGLSMNELSRRSGVGQSSLSYIESGQRQPTFDVIERICSGLGLSVAEFFNEGFMPCPYSSDINSLVN
EVQNLKPSQVSLIKNIATEFSVTNEELELAAKKSLSTIANRESASGVLHIDLLDVFGRKDTVLSAAGVPLSLEDRIEILE
LIKEKLPADEDLDYENNEVIAASYQGNRFAHIPTQEEAEDIELAFKLAEQQKNRKHKK
>Mature_218_residues
MDIGARIRILRTQQGLSMNELSRRSGVGQSSLSYIESGQRQPTFDVIERICSGLGLSVAEFFNEGFMPCPYSSDINSLVN
EVQNLKPSQVSLIKNIATEFSVTNEELELAAKKSLSTIANRESASGVLHIDLLDVFGRKDTVLSAAGVPLSLEDRIEILE
LIKEKLPADEDLDYENNEVIAASYQGNRFAHIPTQEEAEDIELAFKLAEQQKNRKHKK

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24241; Mature: 24241

Theoretical pI: Translated: 4.63; Mature: 4.63

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIGARIRILRTQQGLSMNELSRRSGVGQSSLSYIESGQRQPTFDVIERICSGLGLSVAE
CCCCCEEEEEECCCCCCHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHH
FFNEGFMPCPYSSDINSLVNEVQNLKPSQVSLIKNIATEFSVTNEELELAAKKSLSTIAN
HHHCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC
RESASGVLHIDLLDVFGRKDTVLSAAGVPLSLEDRIEILELIKEKLPADEDLDYENNEVI
CCCCCCEEEEEHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEE
AASYQGNRFAHIPTQEEAEDIELAFKLAEQQKNRKHKK
EEECCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MDIGARIRILRTQQGLSMNELSRRSGVGQSSLSYIESGQRQPTFDVIERICSGLGLSVAE
CCCCCEEEEEECCCCCCHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHH
FFNEGFMPCPYSSDINSLVNEVQNLKPSQVSLIKNIATEFSVTNEELELAAKKSLSTIAN
HHHCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC
RESASGVLHIDLLDVFGRKDTVLSAAGVPLSLEDRIEILELIKEKLPADEDLDYENNEVI
CCCCCCEEEEEHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEE
AASYQGNRFAHIPTQEEAEDIELAFKLAEQQKNRKHKK
EEECCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA