Definition Clostridium difficile 630 chromosome, complete genome.
Accession NC_009089
Length 4,290,252

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The map label for this gene is yueF [H]

Identifier: 126699668

GI number: 126699668

Start: 2364274

End: 2365359

Strand: Direct

Name: yueF [H]

Synonym: CD2051

Alternate gene names: 126699668

Gene position: 2364274-2365359 (Clockwise)

Preceding gene: 126699662

Following gene: 126699676

Centisome position: 55.11

GC content: 25.41

Gene sequence:

>1086_bases
GTGATTATTATTTCAAAGGAAAATATAAAATATTATTTAATAGTCGTGTTTATTGGAATTTTATTTTTTAAATTTATTAA
TACTCCATCAGACTTTATATCTAGTATTGAAGGATTCTTAAAGTTTTTTAGCCCATTTTTATTAGCTATTTTACTTGCTT
TACTTTTAAATCCACTTGTGATGCTTTTTGAGGTAAAATTCAAAGCACATAGACTTTTAGCCATTTTTTTATCTTATATA
TTTATAGGTTTTATTTTAGCCTTTGCCATTAGGTTATTAATTCCATCAATAGCTAATACATTAAATAGATTAATAAATGA
AATGCCTATGTATACTGATTATATAGATAGTTTTATAGAAAAAAATATGTCAAACATAGATTTTCTAAAAACTTTAATTC
CTCATATACAACATAGTTTGGATAATTTATTAAAAGAAGCAAGTAATTTTGTTGGTAAAATTCCTAAAAACTTCTTAATC
TATACACTTAGTATATCTTCTATGCTATTTAATATGACAATGGGATTTATACTATCCATATACATTATATATGACAAAGA
AAAAATTGCATTGGGATTTAAGAGATTTCTATATTCTTCTACTGCTAGAAGCAAGGCAGATAACATTATAGAATTTTTTA
GGACTACTCATGATATTTTCTATGATTATTTACTTGGTAGAATATTAGACTCTCTTATTATTGGTATAATTGCATTTTTA
GGATTTCAATTTGTTATCAGAATAGAAAATGCTTTATTTTTAGCTTCAATAATATTCTTAGGTAATATAATTCCCTATTT
TGGTCCTTTTATTGGTGCAATCCCTCCAATAGCCATGACTATATTATATAGTCCACAAAAAACTATATGGGTCATTGCAT
TTCTATTTATATTGCAACAATTAGATGGAAATTTTATAGAACCAAAAGTTATGGGTAATCAAGTTGGTATAGGAGCTATA
TGGGTAATATCTGCTATTTTGGTGGGACAATCTCTATTTGGTTTCATAGGAGTTTTTCTTTCAGTACCAATAGCTGCTGT
TGTAAAAACTTATGTTGATAAATATATAGATAATCGTTTACAATAG

Upstream 100 bases:

>100_bases
TAAAAACAAGCAAAAAAATTATTTAATTTTCCTAAATAATTGTAATTTCTTTTCACATACTATTAATATGTAATAGCTGA
CTAAACACTATTTTAAGGAA

Downstream 100 bases:

>100_bases
ATTATCTCTACTGTGACTTTAATTTTTAGTTTAAAATTTAACTGCTATTTATTAAATTATTTCTCAAAAAATATCTCTTA
GTAAGAAAAAATTGCTAAGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 361; Mature: 361

Protein sequence:

>361_residues
MIIISKENIKYYLIVVFIGILFFKFINTPSDFISSIEGFLKFFSPFLLAILLALLLNPLVMLFEVKFKAHRLLAIFLSYI
FIGFILAFAIRLLIPSIANTLNRLINEMPMYTDYIDSFIEKNMSNIDFLKTLIPHIQHSLDNLLKEASNFVGKIPKNFLI
YTLSISSMLFNMTMGFILSIYIIYDKEKIALGFKRFLYSSTARSKADNIIEFFRTTHDIFYDYLLGRILDSLIIGIIAFL
GFQFVIRIENALFLASIIFLGNIIPYFGPFIGAIPPIAMTILYSPQKTIWVIAFLFILQQLDGNFIEPKVMGNQVGIGAI
WVISAILVGQSLFGFIGVFLSVPIAAVVKTYVDKYIDNRLQ

Sequences:

>Translated_361_residues
MIIISKENIKYYLIVVFIGILFFKFINTPSDFISSIEGFLKFFSPFLLAILLALLLNPLVMLFEVKFKAHRLLAIFLSYI
FIGFILAFAIRLLIPSIANTLNRLINEMPMYTDYIDSFIEKNMSNIDFLKTLIPHIQHSLDNLLKEASNFVGKIPKNFLI
YTLSISSMLFNMTMGFILSIYIIYDKEKIALGFKRFLYSSTARSKADNIIEFFRTTHDIFYDYLLGRILDSLIIGIIAFL
GFQFVIRIENALFLASIIFLGNIIPYFGPFIGAIPPIAMTILYSPQKTIWVIAFLFILQQLDGNFIEPKVMGNQVGIGAI
WVISAILVGQSLFGFIGVFLSVPIAAVVKTYVDKYIDNRLQ
>Mature_361_residues
MIIISKENIKYYLIVVFIGILFFKFINTPSDFISSIEGFLKFFSPFLLAILLALLLNPLVMLFEVKFKAHRLLAIFLSYI
FIGFILAFAIRLLIPSIANTLNRLINEMPMYTDYIDSFIEKNMSNIDFLKTLIPHIQHSLDNLLKEASNFVGKIPKNFLI
YTLSISSMLFNMTMGFILSIYIIYDKEKIALGFKRFLYSSTARSKADNIIEFFRTTHDIFYDYLLGRILDSLIIGIIAFL
GFQFVIRIENALFLASIIFLGNIIPYFGPFIGAIPPIAMTILYSPQKTIWVIAFLFILQQLDGNFIEPKVMGNQVGIGAI
WVISAILVGQSLFGFIGVFLSVPIAAVVKTYVDKYIDNRLQ

Specific function: Unknown

COG id: COG0628

COG function: function code R; Predicted permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0118 (perM) family [H]

Homologues:

Organism=Escherichia coli, GI1788838, Length=329, Percent_Identity=24.0121580547112, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI87082271, Length=313, Percent_Identity=25.8785942492013, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1787885, Length=316, Percent_Identity=23.1012658227848, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002549 [H]

Pfam domain/function: PF01594 UPF0118 [H]

EC number: NA

Molecular weight: Translated: 41193; Mature: 41193

Theoretical pI: Translated: 9.52; Mature: 9.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIIISKENIKYYLIVVFIGILFFKFINTPSDFISSIEGFLKFFSPFLLAILLALLLNPLV
CEEEEECCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MLFEVKFKAHRLLAIFLSYIFIGFILAFAIRLLIPSIANTLNRLINEMPMYTDYIDSFIE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
KNMSNIDFLKTLIPHIQHSLDNLLKEASNFVGKIPKNFLIYTLSISSMLFNMTMGFILSI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEHHHHHHHHHHHHHHHHHHHH
YIIYDKEKIALGFKRFLYSSTARSKADNIIEFFRTTHDIFYDYLLGRILDSLIIGIIAFL
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GFQFVIRIENALFLASIIFLGNIIPYFGPFIGAIPPIAMTILYSPQKTIWVIAFLFILQQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
LDGNFIEPKVMGNQVGIGAIWVISAILVGQSLFGFIGVFLSVPIAAVVKTYVDKYIDNRL
HCCCCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q
C
>Mature Secondary Structure
MIIISKENIKYYLIVVFIGILFFKFINTPSDFISSIEGFLKFFSPFLLAILLALLLNPLV
CEEEEECCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MLFEVKFKAHRLLAIFLSYIFIGFILAFAIRLLIPSIANTLNRLINEMPMYTDYIDSFIE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
KNMSNIDFLKTLIPHIQHSLDNLLKEASNFVGKIPKNFLIYTLSISSMLFNMTMGFILSI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEHHHHHHHHHHHHHHHHHHHH
YIIYDKEKIALGFKRFLYSSTARSKADNIIEFFRTTHDIFYDYLLGRILDSLIIGIIAFL
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GFQFVIRIENALFLASIIFLGNIIPYFGPFIGAIPPIAMTILYSPQKTIWVIAFLFILQQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
LDGNFIEPKVMGNQVGIGAIWVISAILVGQSLFGFIGVFLSVPIAAVVKTYVDKYIDNRL
HCCCCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]