| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is yueF [H]
Identifier: 126699668
GI number: 126699668
Start: 2364274
End: 2365359
Strand: Direct
Name: yueF [H]
Synonym: CD2051
Alternate gene names: 126699668
Gene position: 2364274-2365359 (Clockwise)
Preceding gene: 126699662
Following gene: 126699676
Centisome position: 55.11
GC content: 25.41
Gene sequence:
>1086_bases GTGATTATTATTTCAAAGGAAAATATAAAATATTATTTAATAGTCGTGTTTATTGGAATTTTATTTTTTAAATTTATTAA TACTCCATCAGACTTTATATCTAGTATTGAAGGATTCTTAAAGTTTTTTAGCCCATTTTTATTAGCTATTTTACTTGCTT TACTTTTAAATCCACTTGTGATGCTTTTTGAGGTAAAATTCAAAGCACATAGACTTTTAGCCATTTTTTTATCTTATATA TTTATAGGTTTTATTTTAGCCTTTGCCATTAGGTTATTAATTCCATCAATAGCTAATACATTAAATAGATTAATAAATGA AATGCCTATGTATACTGATTATATAGATAGTTTTATAGAAAAAAATATGTCAAACATAGATTTTCTAAAAACTTTAATTC CTCATATACAACATAGTTTGGATAATTTATTAAAAGAAGCAAGTAATTTTGTTGGTAAAATTCCTAAAAACTTCTTAATC TATACACTTAGTATATCTTCTATGCTATTTAATATGACAATGGGATTTATACTATCCATATACATTATATATGACAAAGA AAAAATTGCATTGGGATTTAAGAGATTTCTATATTCTTCTACTGCTAGAAGCAAGGCAGATAACATTATAGAATTTTTTA GGACTACTCATGATATTTTCTATGATTATTTACTTGGTAGAATATTAGACTCTCTTATTATTGGTATAATTGCATTTTTA GGATTTCAATTTGTTATCAGAATAGAAAATGCTTTATTTTTAGCTTCAATAATATTCTTAGGTAATATAATTCCCTATTT TGGTCCTTTTATTGGTGCAATCCCTCCAATAGCCATGACTATATTATATAGTCCACAAAAAACTATATGGGTCATTGCAT TTCTATTTATATTGCAACAATTAGATGGAAATTTTATAGAACCAAAAGTTATGGGTAATCAAGTTGGTATAGGAGCTATA TGGGTAATATCTGCTATTTTGGTGGGACAATCTCTATTTGGTTTCATAGGAGTTTTTCTTTCAGTACCAATAGCTGCTGT TGTAAAAACTTATGTTGATAAATATATAGATAATCGTTTACAATAG
Upstream 100 bases:
>100_bases TAAAAACAAGCAAAAAAATTATTTAATTTTCCTAAATAATTGTAATTTCTTTTCACATACTATTAATATGTAATAGCTGA CTAAACACTATTTTAAGGAA
Downstream 100 bases:
>100_bases ATTATCTCTACTGTGACTTTAATTTTTAGTTTAAAATTTAACTGCTATTTATTAAATTATTTCTCAAAAAATATCTCTTA GTAAGAAAAAATTGCTAAGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 361; Mature: 361
Protein sequence:
>361_residues MIIISKENIKYYLIVVFIGILFFKFINTPSDFISSIEGFLKFFSPFLLAILLALLLNPLVMLFEVKFKAHRLLAIFLSYI FIGFILAFAIRLLIPSIANTLNRLINEMPMYTDYIDSFIEKNMSNIDFLKTLIPHIQHSLDNLLKEASNFVGKIPKNFLI YTLSISSMLFNMTMGFILSIYIIYDKEKIALGFKRFLYSSTARSKADNIIEFFRTTHDIFYDYLLGRILDSLIIGIIAFL GFQFVIRIENALFLASIIFLGNIIPYFGPFIGAIPPIAMTILYSPQKTIWVIAFLFILQQLDGNFIEPKVMGNQVGIGAI WVISAILVGQSLFGFIGVFLSVPIAAVVKTYVDKYIDNRLQ
Sequences:
>Translated_361_residues MIIISKENIKYYLIVVFIGILFFKFINTPSDFISSIEGFLKFFSPFLLAILLALLLNPLVMLFEVKFKAHRLLAIFLSYI FIGFILAFAIRLLIPSIANTLNRLINEMPMYTDYIDSFIEKNMSNIDFLKTLIPHIQHSLDNLLKEASNFVGKIPKNFLI YTLSISSMLFNMTMGFILSIYIIYDKEKIALGFKRFLYSSTARSKADNIIEFFRTTHDIFYDYLLGRILDSLIIGIIAFL GFQFVIRIENALFLASIIFLGNIIPYFGPFIGAIPPIAMTILYSPQKTIWVIAFLFILQQLDGNFIEPKVMGNQVGIGAI WVISAILVGQSLFGFIGVFLSVPIAAVVKTYVDKYIDNRLQ >Mature_361_residues MIIISKENIKYYLIVVFIGILFFKFINTPSDFISSIEGFLKFFSPFLLAILLALLLNPLVMLFEVKFKAHRLLAIFLSYI FIGFILAFAIRLLIPSIANTLNRLINEMPMYTDYIDSFIEKNMSNIDFLKTLIPHIQHSLDNLLKEASNFVGKIPKNFLI YTLSISSMLFNMTMGFILSIYIIYDKEKIALGFKRFLYSSTARSKADNIIEFFRTTHDIFYDYLLGRILDSLIIGIIAFL GFQFVIRIENALFLASIIFLGNIIPYFGPFIGAIPPIAMTILYSPQKTIWVIAFLFILQQLDGNFIEPKVMGNQVGIGAI WVISAILVGQSLFGFIGVFLSVPIAAVVKTYVDKYIDNRLQ
Specific function: Unknown
COG id: COG0628
COG function: function code R; Predicted permease
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0118 (perM) family [H]
Homologues:
Organism=Escherichia coli, GI1788838, Length=329, Percent_Identity=24.0121580547112, Blast_Score=83, Evalue=3e-17, Organism=Escherichia coli, GI87082271, Length=313, Percent_Identity=25.8785942492013, Blast_Score=79, Evalue=5e-16, Organism=Escherichia coli, GI1787885, Length=316, Percent_Identity=23.1012658227848, Blast_Score=65, Evalue=5e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002549 [H]
Pfam domain/function: PF01594 UPF0118 [H]
EC number: NA
Molecular weight: Translated: 41193; Mature: 41193
Theoretical pI: Translated: 9.52; Mature: 9.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIIISKENIKYYLIVVFIGILFFKFINTPSDFISSIEGFLKFFSPFLLAILLALLLNPLV CEEEEECCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MLFEVKFKAHRLLAIFLSYIFIGFILAFAIRLLIPSIANTLNRLINEMPMYTDYIDSFIE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH KNMSNIDFLKTLIPHIQHSLDNLLKEASNFVGKIPKNFLIYTLSISSMLFNMTMGFILSI CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEHHHHHHHHHHHHHHHHHHHH YIIYDKEKIALGFKRFLYSSTARSKADNIIEFFRTTHDIFYDYLLGRILDSLIIGIIAFL HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GFQFVIRIENALFLASIIFLGNIIPYFGPFIGAIPPIAMTILYSPQKTIWVIAFLFILQQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH LDGNFIEPKVMGNQVGIGAIWVISAILVGQSLFGFIGVFLSVPIAAVVKTYVDKYIDNRL HCCCCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q C >Mature Secondary Structure MIIISKENIKYYLIVVFIGILFFKFINTPSDFISSIEGFLKFFSPFLLAILLALLLNPLV CEEEEECCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MLFEVKFKAHRLLAIFLSYIFIGFILAFAIRLLIPSIANTLNRLINEMPMYTDYIDSFIE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH KNMSNIDFLKTLIPHIQHSLDNLLKEASNFVGKIPKNFLIYTLSISSMLFNMTMGFILSI CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEHHHHHHHHHHHHHHHHHHHH YIIYDKEKIALGFKRFLYSSTARSKADNIIEFFRTTHDIFYDYLLGRILDSLIIGIIAFL HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GFQFVIRIENALFLASIIFLGNIIPYFGPFIGAIPPIAMTILYSPQKTIWVIAFLFILQQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH LDGNFIEPKVMGNQVGIGAIWVISAILVGQSLFGFIGVFLSVPIAAVVKTYVDKYIDNRL HCCCCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q C
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]