| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
Click here to switch to the map view.
The map label for this gene is 126699387
Identifier: 126699387
GI number: 126699387
Start: 2059089
End: 2059790
Strand: Direct
Name: 126699387
Synonym: CD1778
Alternate gene names: NA
Gene position: 2059089-2059790 (Clockwise)
Preceding gene: 126699386
Following gene: 126699388
Centisome position: 47.99
GC content: 26.21
Gene sequence:
>702_bases ATGAGTATTGAAGATTTATATGATTTTGAATGTGTTCCTTTGAACAATGAGATTGATATTGATGTTTTATTTGAAAAGAT GATAGAAGATGGAAAAGAAAAAGAATATACACCAATTATAGTCATTGATGAAAAAGTAGGGCTATTAAGAAAAAATATAG ATATGATTACTAAAGAGTATGGTTCTCTTGAAAACTATAGGGAGTATTGTTTAACAAAATATAATGAAATTGATGTAAAT CAATTTTTTGATTTTAGGAAGAGTGAGATTTCAGAATTATTAAAGGAGCTAATTGATTTAGAAGATGATTTTTATGATTA TAAACATTTTAGACCAATTATGAATATAGATATATTTCATGAATATAACAAAGTTTACATAGCTAAAATTCCAACAATTA AACCATATGAAGTATTTGCATACATACCTATTGGTGGATTTAATGATTGTCCTAGAGATGAAGAACATATAGCTATTGCA AAATATTGGTATGAAAAGCATGGAATCTTTCCAATCGCAATTGGATGTGATACAGTTCAATATTCTGTAAAAAATTTAAC TAAAGATGGTAAAAAATTTGATGACTTATGTATTGAATTAGTATTTTATTGTGAGGATATTATTATACAAGGGTATGAAA CCTTAAAGGCTCTTAAGGATGTATTAAAACGCTCTACAATAGTGCTTTTTTGGTGGGATTGA
Upstream 100 bases:
>100_bases TTGCCTCTATATTTATAGTTTAAATAATAGTGGTATTAAAAATCTGACAACAAAAATAAAACTTTCAAAAAATTAAATCT AAAAAGAATAGGAGATAAAT
Downstream 100 bases:
>100_bases TATTCTATCATTTAGACAGCATTAAATTGTTAGTCACCAAGAATCCACTTGCTTTAGTTATGGGGAGTGTGTCAAACTAG GTTTTTATACACAGTGTAGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 233; Mature: 232
Protein sequence:
>233_residues MSIEDLYDFECVPLNNEIDIDVLFEKMIEDGKEKEYTPIIVIDEKVGLLRKNIDMITKEYGSLENYREYCLTKYNEIDVN QFFDFRKSEISELLKELIDLEDDFYDYKHFRPIMNIDIFHEYNKVYIAKIPTIKPYEVFAYIPIGGFNDCPRDEEHIAIA KYWYEKHGIFPIAIGCDTVQYSVKNLTKDGKKFDDLCIELVFYCEDIIIQGYETLKALKDVLKRSTIVLFWWD
Sequences:
>Translated_233_residues MSIEDLYDFECVPLNNEIDIDVLFEKMIEDGKEKEYTPIIVIDEKVGLLRKNIDMITKEYGSLENYREYCLTKYNEIDVN QFFDFRKSEISELLKELIDLEDDFYDYKHFRPIMNIDIFHEYNKVYIAKIPTIKPYEVFAYIPIGGFNDCPRDEEHIAIA KYWYEKHGIFPIAIGCDTVQYSVKNLTKDGKKFDDLCIELVFYCEDIIIQGYETLKALKDVLKRSTIVLFWWD >Mature_232_residues SIEDLYDFECVPLNNEIDIDVLFEKMIEDGKEKEYTPIIVIDEKVGLLRKNIDMITKEYGSLENYREYCLTKYNEIDVNQ FFDFRKSEISELLKELIDLEDDFYDYKHFRPIMNIDIFHEYNKVYIAKIPTIKPYEVFAYIPIGGFNDCPRDEEHIAIAK YWYEKHGIFPIAIGCDTVQYSVKNLTKDGKKFDDLCIELVFYCEDIIIQGYETLKALKDVLKRSTIVLFWWD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27801; Mature: 27670
Theoretical pI: Translated: 4.34; Mature: 4.34
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.6 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 2.6 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSIEDLYDFECVPLNNEIDIDVLFEKMIEDGKEKEYTPIIVIDEKVGLLRKNIDMITKEY CCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHHHHHHH GSLENYREYCLTKYNEIDVNQFFDFRKSEISELLKELIDLEDDFYDYKHFRPIMNIDIFH CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHCCEEEEE EYNKVYIAKIPTIKPYEVFAYIPIGGFNDCPRDEEHIAIAKYWYEKHGIFPIAIGCDTVQ ECCEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCEEHHHHHHHHCCCEEEEECCCHHH YSVKNLTKDGKKFDDLCIELVFYCEDIIIQGYETLKALKDVLKRSTIVLFWWD HHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCEEEEEEEC >Mature Secondary Structure SIEDLYDFECVPLNNEIDIDVLFEKMIEDGKEKEYTPIIVIDEKVGLLRKNIDMITKEY CCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHHHHHHH GSLENYREYCLTKYNEIDVNQFFDFRKSEISELLKELIDLEDDFYDYKHFRPIMNIDIFH CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHCCEEEEE EYNKVYIAKIPTIKPYEVFAYIPIGGFNDCPRDEEHIAIAKYWYEKHGIFPIAIGCDTVQ ECCEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCEEHHHHHHHHCCCEEEEECCCHHH YSVKNLTKDGKKFDDLCIELVFYCEDIIIQGYETLKALKDVLKRSTIVLFWWD HHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA