Definition Clostridium difficile 630 chromosome, complete genome.
Accession NC_009089
Length 4,290,252

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The map label for this gene is yfcC [C]

Identifier: 126699314

GI number: 126699314

Start: 1981542

End: 1982936

Strand: Direct

Name: yfcC [C]

Synonym: CD1707

Alternate gene names: 126699314

Gene position: 1981542-1982936 (Clockwise)

Preceding gene: 126699313

Following gene: 126699315

Centisome position: 46.19

GC content: 34.05

Gene sequence:

>1395_bases
ATGACTGACAGTAAAAAGAAACGATTTATTATACCACACACTTTTACAATAATATTTTTACTAATAGTCTTAATGGCAAT
ATTGACTTGGATAGTACCAAGTGGTGAATTTAGTAGAGAAGATGTAGAAGGTAGAATGGTAGTTGTACCAGGGACTTATC
AAAGTGTAGAAAGTAATCCTCAAGGATTTGCAGATGTTTTTAAAGCACCAATAGAAGGCTTTATCGATTCAGCTGAAGTT
GTAGGTTTTGTTTTAATAGTTGGAGGTGCTTTTGGTATTGTAAATAGGACTGGAGCTATAGAAGCAGGAATAGCTTCGGT
TATCTCTAAGTTTAAGGGAAAAGAACTTCTTATAATTCCAATATCAATGATTTTATTTGGACTTGGAGGTACAACATTTG
GGATGGCAGAAGAGACATTACCATTTTATATGATATTTGTTCCACTCATGACATCCTTGGGATATGATTCTCTAACAGCA
ATAGCAATTGTATTTATAGGAGCAGCAGCAGGAGCCGCCGCTTCAACAATAAATCCATTTTCAGTTGGTATTGCACAGGC
ACTAGCTCAACTTGCTCCTGGTTCAGGAGTAACTTACAGAGTAGTTATTTTTATAGCATATATACTAATAAGTATAGCAT
TTGTTATGTACTATGCTAAGAAGGTAAAGGAAAATCCTGAAAGTTCAATAGTATATGAAATAGATAAAAATAATAAATCA
ATACTTAATCAAACTTCAACAGAAATAAAAGAATTTACTTTTAAAGAAGTATCTGTTCTTGCTATATTTGGAATAGGGAT
GGCAATAATGATTTGGGGTGTTTTAAGTCAAGGATGGTACATTCCAGAAATATCAATGTGTTTTGCTGCAATAGGTGTGC
TTTCTGGATTGGTTGGTAGATTATCTCAAATTGAAATCTCAGAAAGTTTTATAGATGGAGCAAAAGATTTAGCATCTGCA
GCTCTTGCTATAGCTTTGGCTCGTGGAATCGTAATAATTGCTCAAAATGGATTTATAATAGATACTATATTAAATTCCGC
AGCAGCCTTTCTAGGTGGGCTTCCAAAGGTTATATTTGTATATTTATCATTTTTCTTGGAAGCTGCATTGGCATTTTTAA
TTCCATCATCTTCAGGTCTTGCTTCACTTACAGTACCTGTACTTGCTCCTCTTGGTGATTTGGTTAATATATCGGCTCAA
GTGATAGTAACCGCTTATCAATTTGGTGTGGGTCTTACAAACTTTATAACTCCAACTTCAGGAGTACTGATGGGAGCACT
TGCAGTAGCCCATATTCCATTTTCAAAATGGGTAAGATTTATAATGCCTATCTTGTTGATTTTGACAGCTGTATCTCTAG
TTTTTTTAACAATAGGTATTTATATAGGGTTTTAA

Upstream 100 bases:

>100_bases
TTTGCTAATAAAAAATTGTAAAAAGGGAAAACTTTAGTCAGAGAGATTAAACAATATCCTAGAAAGATTTAAAATTTAGT
AAAGTATGGAGGACATTATA

Downstream 100 bases:

>100_bases
TTAAGTGTAGTTTTATTTAAGATATTTAGTAATGGTATAAAATGATAATATGTTTTCAATAAATTGCCACTAATTTAATT
AGTGGTAATTTGTTTTTTGT

Product: C4-dicarboxylate anaerobic carrier

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 464; Mature: 463

Protein sequence:

>464_residues
MTDSKKKRFIIPHTFTIIFLLIVLMAILTWIVPSGEFSREDVEGRMVVVPGTYQSVESNPQGFADVFKAPIEGFIDSAEV
VGFVLIVGGAFGIVNRTGAIEAGIASVISKFKGKELLIIPISMILFGLGGTTFGMAEETLPFYMIFVPLMTSLGYDSLTA
IAIVFIGAAAGAAASTINPFSVGIAQALAQLAPGSGVTYRVVIFIAYILISIAFVMYYAKKVKENPESSIVYEIDKNNKS
ILNQTSTEIKEFTFKEVSVLAIFGIGMAIMIWGVLSQGWYIPEISMCFAAIGVLSGLVGRLSQIEISESFIDGAKDLASA
ALAIALARGIVIIAQNGFIIDTILNSAAAFLGGLPKVIFVYLSFFLEAALAFLIPSSSGLASLTVPVLAPLGDLVNISAQ
VIVTAYQFGVGLTNFITPTSGVLMGALAVAHIPFSKWVRFIMPILLILTAVSLVFLTIGIYIGF

Sequences:

>Translated_464_residues
MTDSKKKRFIIPHTFTIIFLLIVLMAILTWIVPSGEFSREDVEGRMVVVPGTYQSVESNPQGFADVFKAPIEGFIDSAEV
VGFVLIVGGAFGIVNRTGAIEAGIASVISKFKGKELLIIPISMILFGLGGTTFGMAEETLPFYMIFVPLMTSLGYDSLTA
IAIVFIGAAAGAAASTINPFSVGIAQALAQLAPGSGVTYRVVIFIAYILISIAFVMYYAKKVKENPESSIVYEIDKNNKS
ILNQTSTEIKEFTFKEVSVLAIFGIGMAIMIWGVLSQGWYIPEISMCFAAIGVLSGLVGRLSQIEISESFIDGAKDLASA
ALAIALARGIVIIAQNGFIIDTILNSAAAFLGGLPKVIFVYLSFFLEAALAFLIPSSSGLASLTVPVLAPLGDLVNISAQ
VIVTAYQFGVGLTNFITPTSGVLMGALAVAHIPFSKWVRFIMPILLILTAVSLVFLTIGIYIGF
>Mature_463_residues
TDSKKKRFIIPHTFTIIFLLIVLMAILTWIVPSGEFSREDVEGRMVVVPGTYQSVESNPQGFADVFKAPIEGFIDSAEVV
GFVLIVGGAFGIVNRTGAIEAGIASVISKFKGKELLIIPISMILFGLGGTTFGMAEETLPFYMIFVPLMTSLGYDSLTAI
AIVFIGAAAGAAASTINPFSVGIAQALAQLAPGSGVTYRVVIFIAYILISIAFVMYYAKKVKENPESSIVYEIDKNNKSI
LNQTSTEIKEFTFKEVSVLAIFGIGMAIMIWGVLSQGWYIPEISMCFAAIGVLSGLVGRLSQIEISESFIDGAKDLASAA
LAIALARGIVIIAQNGFIIDTILNSAAAFLGGLPKVIFVYLSFFLEAALAFLIPSSSGLASLTVPVLAPLGDLVNISAQV
IVTAYQFGVGLTNFITPTSGVLMGALAVAHIPFSKWVRFIMPILLILTAVSLVFLTIGIYIGF

Specific function: Unknown

COG id: COG1288

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis ycgA [H]

Homologues:

Organism=Escherichia coli, GI87082082, Length=495, Percent_Identity=35.959595959596, Blast_Score=296, Evalue=1e-81,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018387
- InterPro:   IPR018385 [H]

Pfam domain/function: PF03606 DcuC [H]

EC number: NA

Molecular weight: Translated: 49369; Mature: 49238

Theoretical pI: Translated: 4.99; Mature: 4.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDSKKKRFIIPHTFTIIFLLIVLMAILTWIVPSGEFSREDVEGRMVVVPGTYQSVESNP
CCCCCCCEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCHHHHCCCC
QGFADVFKAPIEGFIDSAEVVGFVLIVGGAFGIVNRTGAIEAGIASVISKFKGKELLIIP
CHHHHHHHHHHHHHHCHHHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHHHCCCEEEEEE
ISMILFGLGGTTFGMAEETLPFYMIFVPLMTSLGYDSLTAIAIVFIGAAAGAAASTINPF
HHHHHHHCCCCCCCCHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHCCCHH
SVGIAQALAQLAPGSGVTYRVVIFIAYILISIAFVMYYAKKVKENPESSIVYEIDKNNKS
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHH
ILNQTSTEIKEFTFKEVSVLAIFGIGMAIMIWGVLSQGWYIPEISMCFAAIGVLSGLVGR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
LSQIEISESFIDGAKDLASAALAIALARGIVIIAQNGFIIDTILNSAAAFLGGLPKVIFV
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCEEHHHHHHHHHHHHCCCHHHHHH
YLSFFLEAALAFLIPSSSGLASLTVPVLAPLGDLVNISAQVIVTAYQFGVGLTNFITPTS
HHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHCCHHHHHHHHHHHCCCHHHHCCCCH
GVLMGALAVAHIPFSKWVRFIMPILLILTAVSLVFLTIGIYIGF
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TDSKKKRFIIPHTFTIIFLLIVLMAILTWIVPSGEFSREDVEGRMVVVPGTYQSVESNP
CCCCCCEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCHHHHCCCC
QGFADVFKAPIEGFIDSAEVVGFVLIVGGAFGIVNRTGAIEAGIASVISKFKGKELLIIP
CHHHHHHHHHHHHHHCHHHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHHHCCCEEEEEE
ISMILFGLGGTTFGMAEETLPFYMIFVPLMTSLGYDSLTAIAIVFIGAAAGAAASTINPF
HHHHHHHCCCCCCCCHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHCCCHH
SVGIAQALAQLAPGSGVTYRVVIFIAYILISIAFVMYYAKKVKENPESSIVYEIDKNNKS
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHH
ILNQTSTEIKEFTFKEVSVLAIFGIGMAIMIWGVLSQGWYIPEISMCFAAIGVLSGLVGR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
LSQIEISESFIDGAKDLASAALAIALARGIVIIAQNGFIIDTILNSAAAFLGGLPKVIFV
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCEEHHHHHHHHHHHHCCCHHHHHH
YLSFFLEAALAFLIPSSSGLASLTVPVLAPLGDLVNISAQVIVTAYQFGVGLTNFITPTS
HHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHCCHHHHHHHHHHHCCCHHHHCCCCH
GVLMGALAVAHIPFSKWVRFIMPILLILTAVSLVFLTIGIYIGF
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]