| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is 126698949
Identifier: 126698949
GI number: 126698949
Start: 1566461
End: 1567177
Strand: Direct
Name: 126698949
Synonym: CD1350
Alternate gene names: NA
Gene position: 1566461-1567177 (Clockwise)
Preceding gene: 126698948
Following gene: 126698950
Centisome position: 36.51
GC content: 30.54
Gene sequence:
>717_bases ATGGAAAGATTTATTAGAGTGGAATTTCAAAAGATGAAAGGAACTTTTGGAATGAAGTTGATATGGATAGTTCCAGTGTT TTGTATACTTTTGTGTGGACTAGGTGGAGGGCAAAATGCTGCTTTCAACTGGTGGTATACGACATTTCTTCCAGGAGCAT TAACATTAATATCTTCTTTAATAGTATTAAAAGATGAAAAAAGTAAATATCGTGGTATTTTACCCTTGCCAATTGAAATG AAAGACGTTTGGACTGGAAAAATGATTTACTGTATTATTTGTTGTTTTATAGCATCAATTATTTCTGCAATAGGTGTAGT TTTTGTTGGGATAATCTATAAAGAAACTATTTCAATAGGTCAAAATATCATTGCAACTATATTAATTATTTTACTATTTA TGTGGCAGATTCCTCTTTGTATGTTTTTAGCTTCAAAATTTGGTATATTTGTTACAGTTCTAATAAATATGTTCTTCACT ATTGTTGGAGTTGCTGTTTTCTCAACTACAGAAATGTGGTATATGTTTCCATATTCGATTCCTTCAAGATTAATGGCTGT TGTATTGCATATTCTGCCAAATGGTCTTCCTGTACCAGAGGGAAGTGAATTTTTAAATAATGCTGTTATTTTGCCAGGAG TATTAATATCTATTGTTTTATTTGTATTATTTGCTTTAGCTACAAGGGTTTGGTTCAATAATAGAGAGGTGAAGTAA
Upstream 100 bases:
>100_bases AATGGAGTAATGGGTTATCAAGGAGAAGTATCAAAAGAACAAAACTTAGAAAAACTTTTTATGAAAGTTGTAGCTGAAAA TAGAAAGAGAGGGGAGTAAT
Downstream 100 bases:
>100_bases TATGAGACAGTTAATAAGAATATTTTGTTCTGATTTAATAAAATTAAAGAGAAATTTTATAATACTAATGCACATTTGCA TTGCTTTAATGGGGATGGGA
Product: lantibiotic ABC transporter permease
Products: NA
Alternate protein names: Bacteriocin ABC Transporter Permease Protein Subunit; Permease; Lantibiotic ABC Transporter Permease; Lantibiotic ABC Transporter Permease Protein; Transporter Protein; Bacteriocin ABC Transporter Permease Subunit; Bacteriocin Abc Transporter Permease Subunit; Antibiotic ABC Transporter; Lantibiotic PermeaE/MutE; Mutacin ABC Transporter Protein MutE; Subtilin ABC Transporter Permease; Antibiotic Permease Protein SpaE/MutE
Number of amino acids: Translated: 238; Mature: 238
Protein sequence:
>238_residues MERFIRVEFQKMKGTFGMKLIWIVPVFCILLCGLGGGQNAAFNWWYTTFLPGALTLISSLIVLKDEKSKYRGILPLPIEM KDVWTGKMIYCIICCFIASIISAIGVVFVGIIYKETISIGQNIIATILIILLFMWQIPLCMFLASKFGIFVTVLINMFFT IVGVAVFSTTEMWYMFPYSIPSRLMAVVLHILPNGLPVPEGSEFLNNAVILPGVLISIVLFVLFALATRVWFNNREVK
Sequences:
>Translated_238_residues MERFIRVEFQKMKGTFGMKLIWIVPVFCILLCGLGGGQNAAFNWWYTTFLPGALTLISSLIVLKDEKSKYRGILPLPIEM KDVWTGKMIYCIICCFIASIISAIGVVFVGIIYKETISIGQNIIATILIILLFMWQIPLCMFLASKFGIFVTVLINMFFT IVGVAVFSTTEMWYMFPYSIPSRLMAVVLHILPNGLPVPEGSEFLNNAVILPGVLISIVLFVLFALATRVWFNNREVK >Mature_238_residues MERFIRVEFQKMKGTFGMKLIWIVPVFCILLCGLGGGQNAAFNWWYTTFLPGALTLISSLIVLKDEKSKYRGILPLPIEM KDVWTGKMIYCIICCFIASIISAIGVVFVGIIYKETISIGQNIIATILIILLFMWQIPLCMFLASKFGIFVTVLINMFFT IVGVAVFSTTEMWYMFPYSIPSRLMAVVLHILPNGLPVPEGSEFLNNAVILPGVLISIVLFVLFALATRVWFNNREVK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26842; Mature: 26842
Theoretical pI: Translated: 9.03; Mature: 9.03
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 4.6 %Met (Translated Protein) 7.1 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 4.6 %Met (Mature Protein) 7.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MERFIRVEFQKMKGTFGMKLIWIVPVFCILLCGLGGGQNAAFNWWYTTFLPGALTLISSL CCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH IVLKDEKSKYRGILPLPIEMKDVWTGKMIYCIICCFIASIISAIGVVFVGIIYKETISIG HHHCCCHHHHCCCCCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QNIIATILIILLFMWQIPLCMFLASKFGIFVTVLINMFFTIVGVAVFSTTEMWYMFPYSI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCH PSRLMAVVLHILPNGLPVPEGSEFLNNAVILPGVLISIVLFVLFALATRVWFNNREVK HHHHHHHHHHHHCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure MERFIRVEFQKMKGTFGMKLIWIVPVFCILLCGLGGGQNAAFNWWYTTFLPGALTLISSL CCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH IVLKDEKSKYRGILPLPIEMKDVWTGKMIYCIICCFIASIISAIGVVFVGIIYKETISIG HHHCCCHHHHCCCCCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QNIIATILIILLFMWQIPLCMFLASKFGIFVTVLINMFFTIVGVAVFSTTEMWYMFPYSI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCH PSRLMAVVLHILPNGLPVPEGSEFLNNAVILPGVLISIVLFVLFALATRVWFNNREVK HHHHHHHHHHHHCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA