Definition Clostridium difficile 630 chromosome, complete genome.
Accession NC_009089
Length 4,290,252

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The map label for this gene is 126698947

Identifier: 126698947

GI number: 126698947

Start: 1565100

End: 1565636

Strand: Direct

Name: 126698947

Synonym: CD1348

Alternate gene names: NA

Gene position: 1565100-1565636 (Clockwise)

Preceding gene: 126698946

Following gene: 126698948

Centisome position: 36.48

GC content: 25.88

Gene sequence:

>537_bases
ATGAATAAAATAGCAGTAAGTTTTTTAATAATTGCTACTACTTTATTGAGTACGGCATGTATGGATTATAGCATCAGTGC
AGTTGAGCTAGTTGATTCTAAAGAATCAGCAGTTGTAAAGAAGGATGAAGATGCAAAAGAAGAAACAACTAGTAAAATGA
TTAATTCTAAAAAAACTACTAAAATACCTATAGAGATAATTTCAAAGGATGAGAAAATAGTAAAGTACTTACAGATTGAT
GAAGAAAGTTCACTTAAGGATAAACTGCGATTAATCTTAGATACATTATCAAATGAGTATTTTAATGGTTTAGACATGGA
AGTAGAAGTTAAGGAAAAAGATAATCTTGTTAAAATAAACTTGATAGAACCAGATAAAAAAAGTAGAGTTTCTTGGAAAG
ATGATTATTTGAATGAACAAAATATAATATATACTATAAATAATATTATTAAAAATGTCATCCAAGAAGAAGATAATAGC
ATTTGGATTGAAGAAGTAGAGATATACTACAATGGAAAATTAATAGAATTAAGATAA

Upstream 100 bases:

>100_bases
TAATTTACTATAATAATTCATAAATTGATTTAAAAGTATAAAAATATAATCTATACTATGGTATAATAAGTATCGAAAGA
GAATTAGGAGAGGGATACTT

Downstream 100 bases:

>100_bases
AAAAAGATGTGTTTTTAACACATCTTTTTTTGTTTTTTAATTCTTATAAAATCCTTATATTTATGATTTAGAATGATTCT
TGTAAATAAGTTTGACAAAA

Product: lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 178; Mature: 178

Protein sequence:

>178_residues
MNKIAVSFLIIATTLLSTACMDYSISAVELVDSKESAVVKKDEDAKEETTSKMINSKKTTKIPIEIISKDEKIVKYLQID
EESSLKDKLRLILDTLSNEYFNGLDMEVEVKEKDNLVKINLIEPDKKSRVSWKDDYLNEQNIIYTINNIIKNVIQEEDNS
IWIEEVEIYYNGKLIELR

Sequences:

>Translated_178_residues
MNKIAVSFLIIATTLLSTACMDYSISAVELVDSKESAVVKKDEDAKEETTSKMINSKKTTKIPIEIISKDEKIVKYLQID
EESSLKDKLRLILDTLSNEYFNGLDMEVEVKEKDNLVKINLIEPDKKSRVSWKDDYLNEQNIIYTINNIIKNVIQEEDNS
IWIEEVEIYYNGKLIELR
>Mature_178_residues
MNKIAVSFLIIATTLLSTACMDYSISAVELVDSKESAVVKKDEDAKEETTSKMINSKKTTKIPIEIISKDEKIVKYLQID
EESSLKDKLRLILDTLSNEYFNGLDMEVEVKEKDNLVKINLIEPDKKSRVSWKDDYLNEQNIIYTINNIIKNVIQEEDNS
IWIEEVEIYYNGKLIELR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20601; Mature: 20601

Theoretical pI: Translated: 4.43; Mature: 4.43

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKIAVSFLIIATTLLSTACMDYSISAVELVDSKESAVVKKDEDAKEETTSKMINSKKTT
CCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEECCCCHHHHHHHHHHCCCCCC
KIPIEIISKDEKIVKYLQIDEESSLKDKLRLILDTLSNEYFNGLDMEVEVKEKDNLVKIN
CCEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEEEE
LIEPDKKSRVSWKDDYLNEQNIIYTINNIIKNVIQEEDNSIWIEEVEIYYNGKLIELR
EECCCCCCCCCCCHHCCCCCCEEEEHHHHHHHHHHCCCCEEEEEEEEEEECCEEEEEC
>Mature Secondary Structure
MNKIAVSFLIIATTLLSTACMDYSISAVELVDSKESAVVKKDEDAKEETTSKMINSKKTT
CCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEECCCCHHHHHHHHHHCCCCCC
KIPIEIISKDEKIVKYLQIDEESSLKDKLRLILDTLSNEYFNGLDMEVEVKEKDNLVKIN
CCEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEEEE
LIEPDKKSRVSWKDDYLNEQNIIYTINNIIKNVIQEEDNSIWIEEVEIYYNGKLIELR
EECCCCCCCCCCCHHCCCCCCEEEEHHHHHHHHHHCCCCEEEEEEEEEEECCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA