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The map label for this gene is yqxC [H]

Identifier: 126698804

GI number: 126698804

Start: 1406560

End: 1407372

Strand: Direct

Name: yqxC [H]

Synonym: CD1208

Alternate gene names: 126698804

Gene position: 1406560-1407372 (Clockwise)

Preceding gene: 126698803

Following gene: 126698805

Centisome position: 32.79

GC content: 31.98

Gene sequence:

>813_bases
ATGAAAAAAAGAATAGATTTATTATTAGTAGAACAAGGGTACTTTGAAAGTAGAGAAAGAGCCAAAAAAGCAATAATGGC
TGGATTGGTTTTTGTTGATAATCAAAGGTGTGATAAGGCTGGTACAGAAGTAAAAGAAGATTGTAGTATAGAAGTAAAAG
GAAATCCAATACCATATGTCAGTAGAGGTGGTTTAAAGCTTGAAAAAGCAATGAAAAACTTTGATTTGACTATTGATGGA
AAGGTATGTATGGATATAGGGGCATCCACAGGTGGTTTTACAGATTGTATGCTCAAAAATGGAGCAATAAAAGTATTTTC
TATAGATGTTGGTTATGGTCAACTTGCATGGAAATTGAGACAAGATGATAGGGTTGTGTGTATGGAAAGAACCAATATAA
GAAATGTGACAATAGAAGATACAAAGCAGTTTGCTGATTTTGCGTCAATTGATGTGTCTTTTATATCGTTAAAGTTAGTA
CTTCCAAAGGCAAAGGAGTTAGTACGTCATGATGGGGAAGTTGTCGCTTTAATTAAACCTCAATTTGAAGCAGGAAGAGA
AAAAGTAGGTAAAAAAGGAGTAGTTAGAGAAAAATCTACACATATAGAAGTTATAAAAATGATTTCTGATTTTTCAGTCG
AAAATGGATTTGAGATTTTAGGGTTAGATTTTTCTCCTATTAAAGGTCCTGAAGGTAATATAGAATATCTAATTCATTTG
AGAAATGGAAATGAAGGATATGAATTTGATGGTGAGACATACAATAACAAAATAGTAGAAGTTGTTGAAGCTTCTCATAA
TTTAGACAAATAG

Upstream 100 bases:

>100_bases
ATATAAAATATAGAATTTATCAATTAGAATAAATATCAAGTGTGTTACTTCAAGCTACTTTAGTTATCATTAAAGTAGCT
TTTAACAGAAAGGTAATTGT

Downstream 100 bases:

>100_bases
GTTAAAAGGGGGCTTAGATTTGATCCTCGAATTATATATGAAAAATTGTGCCTTAGTTGAAGAACTAAGGTTGAATATTG
ATAAAAACTTAAATATACTT

Product: RNA methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 270; Mature: 270

Protein sequence:

>270_residues
MKKRIDLLLVEQGYFESRERAKKAIMAGLVFVDNQRCDKAGTEVKEDCSIEVKGNPIPYVSRGGLKLEKAMKNFDLTIDG
KVCMDIGASTGGFTDCMLKNGAIKVFSIDVGYGQLAWKLRQDDRVVCMERTNIRNVTIEDTKQFADFASIDVSFISLKLV
LPKAKELVRHDGEVVALIKPQFEAGREKVGKKGVVREKSTHIEVIKMISDFSVENGFEILGLDFSPIKGPEGNIEYLIHL
RNGNEGYEFDGETYNNKIVEVVEASHNLDK

Sequences:

>Translated_270_residues
MKKRIDLLLVEQGYFESRERAKKAIMAGLVFVDNQRCDKAGTEVKEDCSIEVKGNPIPYVSRGGLKLEKAMKNFDLTIDG
KVCMDIGASTGGFTDCMLKNGAIKVFSIDVGYGQLAWKLRQDDRVVCMERTNIRNVTIEDTKQFADFASIDVSFISLKLV
LPKAKELVRHDGEVVALIKPQFEAGREKVGKKGVVREKSTHIEVIKMISDFSVENGFEILGLDFSPIKGPEGNIEYLIHL
RNGNEGYEFDGETYNNKIVEVVEASHNLDK
>Mature_270_residues
MKKRIDLLLVEQGYFESRERAKKAIMAGLVFVDNQRCDKAGTEVKEDCSIEVKGNPIPYVSRGGLKLEKAMKNFDLTIDG
KVCMDIGASTGGFTDCMLKNGAIKVFSIDVGYGQLAWKLRQDDRVVCMERTNIRNVTIEDTKQFADFASIDVSFISLKLV
LPKAKELVRHDGEVVALIKPQFEAGREKVGKKGVVREKSTHIEVIKMISDFSVENGFEILGLDFSPIKGPEGNIEYLIHL
RNGNEGYEFDGETYNNKIVEVVEASHNLDK

Specific function: Unknown

COG id: COG1189

COG function: function code J; Predicted rRNA methylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004538
- InterPro:   IPR002877
- InterPro:   IPR002942 [H]

Pfam domain/function: PF01728 FtsJ; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 30215; Mature: 30215

Theoretical pI: Translated: 6.17; Mature: 6.17

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKRIDLLLVEQGYFESRERAKKAIMAGLVFVDNQRCDKAGTEVKEDCSIEVKGNPIPYV
CCCCEEEEEEECCCHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCEEEECCCCCCEE
SRGGLKLEKAMKNFDLTIDGKVCMDIGASTGGFTDCMLKNGAIKVFSIDVGYGQLAWKLR
ECCCEEHHHHHHHCCEEECCEEEEEECCCCCCCCCEEECCCCEEEEEEECCCCEEEEEEC
QDDRVVCMERTNIRNVTIEDTKQFADFASIDVSFISLKLVLPKAKELVRHDGEVVALIKP
CCCEEEEEECCCCCEEEEHHHHHHHHHHHCEEEEEEEEEECHHHHHHHHCCCCEEEEECC
QFEAGREKVGKKGVVREKSTHIEVIKMISDFSVENGFEILGLDFSPIKGPEGNIEYLIHL
CHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCEEEEEEE
RNGNEGYEFDGETYNNKIVEVVEASHNLDK
ECCCCCCEECCCCCCCHHEEEEEHHCCCCC
>Mature Secondary Structure
MKKRIDLLLVEQGYFESRERAKKAIMAGLVFVDNQRCDKAGTEVKEDCSIEVKGNPIPYV
CCCCEEEEEEECCCHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCEEEECCCCCCEE
SRGGLKLEKAMKNFDLTIDGKVCMDIGASTGGFTDCMLKNGAIKVFSIDVGYGQLAWKLR
ECCCEEHHHHHHHCCEEECCEEEEEECCCCCCCCCEEECCCCEEEEEEECCCCEEEEEEC
QDDRVVCMERTNIRNVTIEDTKQFADFASIDVSFISLKLVLPKAKELVRHDGEVVALIKP
CCCEEEEEECCCCCEEEEHHHHHHHHHHHCEEEEEEEEEECHHHHHHHHCCCCEEEEECC
QFEAGREKVGKKGVVREKSTHIEVIKMISDFSVENGFEILGLDFSPIKGPEGNIEYLIHL
CHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCEEEEEEE
RNGNEGYEFDGETYNNKIVEVVEASHNLDK
ECCCCCCEECCCCCCCHHEEEEEHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 2507400 [H]