Definition Clostridium difficile 630 chromosome, complete genome.
Accession NC_009089
Length 4,290,252

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The map label for this gene is spoiIIIAF

Identifier: 126698793

GI number: 126698793

Start: 1397736

End: 1398353

Strand: Direct

Name: spoiIIIAF

Synonym: CD1197

Alternate gene names: NA

Gene position: 1397736-1398353 (Clockwise)

Preceding gene: 126698792

Following gene: 126698794

Centisome position: 32.58

GC content: 27.18

Gene sequence:

>618_bases
ATGTTAGAGGGCATAAAGGCATGGATAGTTAGTGTTTTGATAGGAGCATTTATAGTAAATATAGTAGATATGATTTTACC
AAGTTCTAAGATAAAACCTTATGTCAACCTAGTTTTAAACTTTATGTTTGTATTTATTGTAATAACTCCAGTAGTAGGAT
TTTTTTCAAAAGATATGAGTTTAGAAGATAGAATATTAAAATCTATGGGAAACTACAACAAGCAGTATGTAGATAGTACA
AATGCTTTGGCAAAAGAGACTGGAAATAATAGTCTATCCAAGGGATATGAGGATGGGTTAAAAGAAGTACTTAAATTAAA
ACTTGATGAATATGGTTATGATTTAGAAGATATAGAGCTTAATGGGGCAAATATAAATAATATAAAAATAAAAGAAAAGA
ATAATAGTGCAAAAAGTAATAACAGTTCCAATGAAGAAAATAAAAATAATAGTACTAAAAGAGAGGAAGAAAACATAAAC
TCTAATGACAAAGAAAATTCTAAACAAGTCTTCAAAAAAGGTACAGAGTATGGGTTGAACCTAAATGAAGAAAAATTAAA
AAACGACTTAATAAAGGTGCTGGATGTTTCTATAGAAGATATACAAATTGATAAATAG

Upstream 100 bases:

>100_bases
TAGCTATCTTGACCTCGATAAGTGTCGTAAGTCAAGGGTAATTTATATATCAGTGAAAAATAATTACATTTAATCTAATG
TTTTTAGAGAGGAGGATGCT

Downstream 100 bases:

>100_bases
GAGTTGGGAGAATGTTGAAAAACTTAAATGACAAAGATAAGAGAAAGGTATATTCACTAATAACTATAGCAGGAATATGT
GTGGTTTCATTAGTATTATT

Product: stage III sporulation protein AF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 205; Mature: 205

Protein sequence:

>205_residues
MLEGIKAWIVSVLIGAFIVNIVDMILPSSKIKPYVNLVLNFMFVFIVITPVVGFFSKDMSLEDRILKSMGNYNKQYVDST
NALAKETGNNSLSKGYEDGLKEVLKLKLDEYGYDLEDIELNGANINNIKIKEKNNSAKSNNSSNEENKNNSTKREEENIN
SNDKENSKQVFKKGTEYGLNLNEEKLKNDLIKVLDVSIEDIQIDK

Sequences:

>Translated_205_residues
MLEGIKAWIVSVLIGAFIVNIVDMILPSSKIKPYVNLVLNFMFVFIVITPVVGFFSKDMSLEDRILKSMGNYNKQYVDST
NALAKETGNNSLSKGYEDGLKEVLKLKLDEYGYDLEDIELNGANINNIKIKEKNNSAKSNNSSNEENKNNSTKREEENIN
SNDKENSKQVFKKGTEYGLNLNEEKLKNDLIKVLDVSIEDIQIDK
>Mature_205_residues
MLEGIKAWIVSVLIGAFIVNIVDMILPSSKIKPYVNLVLNFMFVFIVITPVVGFFSKDMSLEDRILKSMGNYNKQYVDST
NALAKETGNNSLSKGYEDGLKEVLKLKLDEYGYDLEDIELNGANINNIKIKEKNNSAKSNNSSNEENKNNSTKREEENIN
SNDKENSKQVFKKGTEYGLNLNEEKLKNDLIKVLDVSIEDIQIDK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23196; Mature: 23196

Theoretical pI: Translated: 4.77; Mature: 4.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLEGIKAWIVSVLIGAFIVNIVDMILPSSKIKPYVNLVLNFMFVFIVITPVVGFFSKDMS
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
LEDRILKSMGNYNKQYVDSTNALAKETGNNSLSKGYEDGLKEVLKLKLDEYGYDLEDIEL
HHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE
NGANINNIKIKEKNNSAKSNNSSNEENKNNSTKREEENINSNDKENSKQVFKKGTEYGLN
CCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHCCHHCCCC
LNEEKLKNDLIKVLDVSIEDIQIDK
CCHHHHHHHHHHHHHCCHHHEECCC
>Mature Secondary Structure
MLEGIKAWIVSVLIGAFIVNIVDMILPSSKIKPYVNLVLNFMFVFIVITPVVGFFSKDMS
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
LEDRILKSMGNYNKQYVDSTNALAKETGNNSLSKGYEDGLKEVLKLKLDEYGYDLEDIEL
HHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE
NGANINNIKIKEKNNSAKSNNSSNEENKNNSTKREEENINSNDKENSKQVFKKGTEYGLN
CCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHCCHHCCCC
LNEEKLKNDLIKVLDVSIEDIQIDK
CCHHHHHHHHHHHHHCCHHHEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA