| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is spoiIIIAF
Identifier: 126698793
GI number: 126698793
Start: 1397736
End: 1398353
Strand: Direct
Name: spoiIIIAF
Synonym: CD1197
Alternate gene names: NA
Gene position: 1397736-1398353 (Clockwise)
Preceding gene: 126698792
Following gene: 126698794
Centisome position: 32.58
GC content: 27.18
Gene sequence:
>618_bases ATGTTAGAGGGCATAAAGGCATGGATAGTTAGTGTTTTGATAGGAGCATTTATAGTAAATATAGTAGATATGATTTTACC AAGTTCTAAGATAAAACCTTATGTCAACCTAGTTTTAAACTTTATGTTTGTATTTATTGTAATAACTCCAGTAGTAGGAT TTTTTTCAAAAGATATGAGTTTAGAAGATAGAATATTAAAATCTATGGGAAACTACAACAAGCAGTATGTAGATAGTACA AATGCTTTGGCAAAAGAGACTGGAAATAATAGTCTATCCAAGGGATATGAGGATGGGTTAAAAGAAGTACTTAAATTAAA ACTTGATGAATATGGTTATGATTTAGAAGATATAGAGCTTAATGGGGCAAATATAAATAATATAAAAATAAAAGAAAAGA ATAATAGTGCAAAAAGTAATAACAGTTCCAATGAAGAAAATAAAAATAATAGTACTAAAAGAGAGGAAGAAAACATAAAC TCTAATGACAAAGAAAATTCTAAACAAGTCTTCAAAAAAGGTACAGAGTATGGGTTGAACCTAAATGAAGAAAAATTAAA AAACGACTTAATAAAGGTGCTGGATGTTTCTATAGAAGATATACAAATTGATAAATAG
Upstream 100 bases:
>100_bases TAGCTATCTTGACCTCGATAAGTGTCGTAAGTCAAGGGTAATTTATATATCAGTGAAAAATAATTACATTTAATCTAATG TTTTTAGAGAGGAGGATGCT
Downstream 100 bases:
>100_bases GAGTTGGGAGAATGTTGAAAAACTTAAATGACAAAGATAAGAGAAAGGTATATTCACTAATAACTATAGCAGGAATATGT GTGGTTTCATTAGTATTATT
Product: stage III sporulation protein AF
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 205; Mature: 205
Protein sequence:
>205_residues MLEGIKAWIVSVLIGAFIVNIVDMILPSSKIKPYVNLVLNFMFVFIVITPVVGFFSKDMSLEDRILKSMGNYNKQYVDST NALAKETGNNSLSKGYEDGLKEVLKLKLDEYGYDLEDIELNGANINNIKIKEKNNSAKSNNSSNEENKNNSTKREEENIN SNDKENSKQVFKKGTEYGLNLNEEKLKNDLIKVLDVSIEDIQIDK
Sequences:
>Translated_205_residues MLEGIKAWIVSVLIGAFIVNIVDMILPSSKIKPYVNLVLNFMFVFIVITPVVGFFSKDMSLEDRILKSMGNYNKQYVDST NALAKETGNNSLSKGYEDGLKEVLKLKLDEYGYDLEDIELNGANINNIKIKEKNNSAKSNNSSNEENKNNSTKREEENIN SNDKENSKQVFKKGTEYGLNLNEEKLKNDLIKVLDVSIEDIQIDK >Mature_205_residues MLEGIKAWIVSVLIGAFIVNIVDMILPSSKIKPYVNLVLNFMFVFIVITPVVGFFSKDMSLEDRILKSMGNYNKQYVDST NALAKETGNNSLSKGYEDGLKEVLKLKLDEYGYDLEDIELNGANINNIKIKEKNNSAKSNNSSNEENKNNSTKREEENIN SNDKENSKQVFKKGTEYGLNLNEEKLKNDLIKVLDVSIEDIQIDK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23196; Mature: 23196
Theoretical pI: Translated: 4.77; Mature: 4.77
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLEGIKAWIVSVLIGAFIVNIVDMILPSSKIKPYVNLVLNFMFVFIVITPVVGFFSKDMS CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC LEDRILKSMGNYNKQYVDSTNALAKETGNNSLSKGYEDGLKEVLKLKLDEYGYDLEDIEL HHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE NGANINNIKIKEKNNSAKSNNSSNEENKNNSTKREEENINSNDKENSKQVFKKGTEYGLN CCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHCCHHCCCC LNEEKLKNDLIKVLDVSIEDIQIDK CCHHHHHHHHHHHHHCCHHHEECCC >Mature Secondary Structure MLEGIKAWIVSVLIGAFIVNIVDMILPSSKIKPYVNLVLNFMFVFIVITPVVGFFSKDMS CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC LEDRILKSMGNYNKQYVDSTNALAKETGNNSLSKGYEDGLKEVLKLKLDEYGYDLEDIEL HHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE NGANINNIKIKEKNNSAKSNNSSNEENKNNSTKREEENINSNDKENSKQVFKKGTEYGLN CCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHCCHHCCCC LNEEKLKNDLIKVLDVSIEDIQIDK CCHHHHHHHHHHHHHCCHHHEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA