| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
Click here to switch to the map view.
The map label for this gene is spoIIIAG [H]
Identifier: 126698794
GI number: 126698794
Start: 1398365
End: 1398919
Strand: Direct
Name: spoIIIAG [H]
Synonym: CD1198
Alternate gene names: 126698794
Gene position: 1398365-1398919 (Clockwise)
Preceding gene: 126698793
Following gene: 126698795
Centisome position: 32.59
GC content: 31.89
Gene sequence:
>555_bases ATGTTGAAAAACTTAAATGACAAAGATAAGAGAAAGGTATATTCACTAATAACTATAGCAGGAATATGTGTGGTTTCATT AGTATTATTATCTTGTTTTCCTAGTAGCAAAAGCGATAAACAAGTTGGAAAAACAGAGACTAATAAAAATGCTGAAAAGC AAGTCACTAAAGAACAAGAAAAAGATGATTTAGAGTCAAAATTAACAGCAATACTATCTAAAATTGATGGTGCAGGAGAC GTTGATGTAATGGTTACATTTGAATCAAGTGAAGAAATACAACCTGCTTTTAATTCAAATAATACAACAGAAACAACAGA GGAAAAAGATGCACAAGGTGGAGAAAGAACAGTTACGACTTCTAGTGAAAATAAAACAATGATAACTTCAAATTCAAGTG ACCCTGTAGTTATAAAAACTACAGAGCCAAAGATAAAGGGAGTGATAGTGGTAGCAAGTGGAGCAAGTGACCCAAGTGTT AAAGAGACACTTTATAGTGCAGTACAAACATCATTACAAGTAGCTGGTCATCAAGTAGAAATATATTCTAAATAA
Upstream 100 bases:
>100_bases ATGGGTTGAACCTAAATGAAGAAAAATTAAAAAACGACTTAATAAAGGTGCTGGATGTTTCTATAGAAGATATACAAATT GATAAATAGGAGTTGGGAGA
Downstream 100 bases:
>100_bases ATACATATAACCGGGGGGATAAATGAATGAAGTTTAATTATAAGGGAAGAGGATTTGTAATAATAACTTTAACTGCAATG TTAGTGGTAGTAGGAACAGT
Product: stage III sporulation protein AG
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 184; Mature: 184
Protein sequence:
>184_residues MLKNLNDKDKRKVYSLITIAGICVVSLVLLSCFPSSKSDKQVGKTETNKNAEKQVTKEQEKDDLESKLTAILSKIDGAGD VDVMVTFESSEEIQPAFNSNNTTETTEEKDAQGGERTVTTSSENKTMITSNSSDPVVIKTTEPKIKGVIVVASGASDPSV KETLYSAVQTSLQVAGHQVEIYSK
Sequences:
>Translated_184_residues MLKNLNDKDKRKVYSLITIAGICVVSLVLLSCFPSSKSDKQVGKTETNKNAEKQVTKEQEKDDLESKLTAILSKIDGAGD VDVMVTFESSEEIQPAFNSNNTTETTEEKDAQGGERTVTTSSENKTMITSNSSDPVVIKTTEPKIKGVIVVASGASDPSV KETLYSAVQTSLQVAGHQVEIYSK >Mature_184_residues MLKNLNDKDKRKVYSLITIAGICVVSLVLLSCFPSSKSDKQVGKTETNKNAEKQVTKEQEKDDLESKLTAILSKIDGAGD VDVMVTFESSEEIQPAFNSNNTTETTEEKDAQGGERTVTTSSENKTMITSNSSDPVVIKTTEPKIKGVIVVASGASDPSV KETLYSAVQTSLQVAGHQVEIYSK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014195 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19865; Mature: 19865
Theoretical pI: Translated: 4.79; Mature: 4.79
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLKNLNDKDKRKVYSLITIAGICVVSLVLLSCFPSSKSDKQVGKTETNKNAEKQVTKEQE CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHH KDDLESKLTAILSKIDGAGDVDVMVTFESSEEIQPAFNSNNTTETTEEKDAQGGERTVTT HHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHCCCCCEEEEE SSENKTMITSNSSDPVVIKTTEPKIKGVIVVASGASDPSVKETLYSAVQTSLQVAGHQVE CCCCCEEEECCCCCCEEEEECCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEE IYSK EEEC >Mature Secondary Structure MLKNLNDKDKRKVYSLITIAGICVVSLVLLSCFPSSKSDKQVGKTETNKNAEKQVTKEQE CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHH KDDLESKLTAILSKIDGAGDVDVMVTFESSEEIQPAFNSNNTTETTEEKDAQGGERTVTT HHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHCCCCCEEEEE SSENKTMITSNSSDPVVIKTTEPKIKGVIVVASGASDPSVKETLYSAVQTSLQVAGHQVE CCCCCEEEECCCCCCEEEEECCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEE IYSK EEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 8969508; 9384377 [H]