| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is spoIIIAE [H]
Identifier: 126698792
GI number: 126698792
Start: 1396465
End: 1397676
Strand: Direct
Name: spoIIIAE [H]
Synonym: CD1196
Alternate gene names: 126698792
Gene position: 1396465-1397676 (Clockwise)
Preceding gene: 126698791
Following gene: 126698793
Centisome position: 32.55
GC content: 27.15
Gene sequence:
>1212_bases TTGCTTATGAAAAAAAGATTTTTACCAATGATTATAGGTTTTTTATTTACTTTCTTTTTTGTAAATATCTTTGCTATTAT GATATTTGCTAATGAAGTACCAAGTAGTGAAGATAAAGAATATGGTGAAACAAAAAATAGCATAGATAAGTATATAGATG GTCAATTAGACAAGCTAGATATAAATGAGATTCAAGACTATATAAATAAAGAAATAGTTATTAATGATGTTAATTTAAAA TCATTTGTAAAAGATTTAATTAGTGGAGAAAAAAATATCTTAGATTTATTCAATAAAGATGGATTGAAGATATTGATGTT TGATGAATTTAAAGCAAGTTTAAAGGTAGTAGCAGTAATTTTGGTACTGGCTCTGTTATCATCTATTTTAAAGAGTCTGG AAAACTCTTTTTCATCAGGTGCAGTAAGTCAAATAGCAACATATATAATATTTATCACAATGGTATCACTTACACTTATT GGTTTTAAAGATGTATTACAGATTTGCTATGATGCAATAGACCATACTGTAGGTCTTATGCAAGTTATAATGCCAATATT AATAACATTTTTACTTTTAATTGGATTCCCAATAACGTCGACTACTTTGAATCCTATCTTCATAGGAGGAGTAACATTTA TAAATGTATTTTTTAAAAATTTTCTATTTGTATCTATTACTGTTGCATTTGGAATTTTAATAATAAACAATTTATCAAAA AATATAAGGCTAAAGAGATTTTTCTCCTTTGTAAAACAAATAAATTATGTTTCTATTGGAGCTATGTTTACTGTTTACTT AGGTCTTGTATCCATACAAGGACTGTATGTAACCAGTTTTGATAAATTCAGTGTAAAGACTGCTAAATTTGCTATAGGTA ATTTTATTCCTGTTGTAGGTGGATTTGTATCTGACTCTGTGGATATTTTATTATCTTCATCTCAGCTTATAAAAAATATA TTTGGAGGAATAGGGCTTATCTTACTTGTTGGAATTTGCTTACTTCCAGTAATAAAAATTTTATCAGTAATAGTAGTGTA CAAATTAGCAGCAATAATTGTAGAGCCTGTTGGAGAGGATGGAATATCTAATTTTTTAAATGAAGTGGCAAATTTAATGA TAATAATGCTAGCATCAGTAATTGCTATAACAGTAATGTTCTTTGTAACTGTAGCTATCTTGACCTCGATAAGTGTCGTA AGTCAAGGGTAA
Upstream 100 bases:
>100_bases GGTGGTGAATATAATTCCATAGATGTGTATCTTGGAATGAATATAAGTATATTAGAGAGCTTTCGTTGTATTGAGGTTTA TAGAGTGAAGAGAGGCATGG
Downstream 100 bases:
>100_bases TTTATATATCAGTGAAAAATAATTACATTTAATCTAATGTTTTTAGAGAGGAGGATGCTATGTTAGAGGGCATAAAGGCA TGGATAGTTAGTGTTTTGAT
Product: stage III sporulation-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 403; Mature: 403
Protein sequence:
>403_residues MLMKKRFLPMIIGFLFTFFFVNIFAIMIFANEVPSSEDKEYGETKNSIDKYIDGQLDKLDINEIQDYINKEIVINDVNLK SFVKDLISGEKNILDLFNKDGLKILMFDEFKASLKVVAVILVLALLSSILKSLENSFSSGAVSQIATYIIFITMVSLTLI GFKDVLQICYDAIDHTVGLMQVIMPILITFLLLIGFPITSTTLNPIFIGGVTFINVFFKNFLFVSITVAFGILIINNLSK NIRLKRFFSFVKQINYVSIGAMFTVYLGLVSIQGLYVTSFDKFSVKTAKFAIGNFIPVVGGFVSDSVDILLSSSQLIKNI FGGIGLILLVGICLLPVIKILSVIVVYKLAAIIVEPVGEDGISNFLNEVANLMIIMLASVIAITVMFFVTVAILTSISVV SQG
Sequences:
>Translated_403_residues MLMKKRFLPMIIGFLFTFFFVNIFAIMIFANEVPSSEDKEYGETKNSIDKYIDGQLDKLDINEIQDYINKEIVINDVNLK SFVKDLISGEKNILDLFNKDGLKILMFDEFKASLKVVAVILVLALLSSILKSLENSFSSGAVSQIATYIIFITMVSLTLI GFKDVLQICYDAIDHTVGLMQVIMPILITFLLLIGFPITSTTLNPIFIGGVTFINVFFKNFLFVSITVAFGILIINNLSK NIRLKRFFSFVKQINYVSIGAMFTVYLGLVSIQGLYVTSFDKFSVKTAKFAIGNFIPVVGGFVSDSVDILLSSSQLIKNI FGGIGLILLVGICLLPVIKILSVIVVYKLAAIIVEPVGEDGISNFLNEVANLMIIMLASVIAITVMFFVTVAILTSISVV SQG >Mature_403_residues MLMKKRFLPMIIGFLFTFFFVNIFAIMIFANEVPSSEDKEYGETKNSIDKYIDGQLDKLDINEIQDYINKEIVINDVNLK SFVKDLISGEKNILDLFNKDGLKILMFDEFKASLKVVAVILVLALLSSILKSLENSFSSGAVSQIATYIIFITMVSLTLI GFKDVLQICYDAIDHTVGLMQVIMPILITFLLLIGFPITSTTLNPIFIGGVTFINVFFKNFLFVSITVAFGILIINNLSK NIRLKRFFSFVKQINYVSIGAMFTVYLGLVSIQGLYVTSFDKFSVKTAKFAIGNFIPVVGGFVSDSVDILLSSSQLIKNI FGGIGLILLVGICLLPVIKILSVIVVYKLAAIIVEPVGEDGISNFLNEVANLMIIMLASVIAITVMFFVTVAILTSISVV SQG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014194 [H]
Pfam domain/function: PF09546 Spore_III_AE [H]
EC number: NA
Molecular weight: Translated: 44497; Mature: 44497
Theoretical pI: Translated: 6.04; Mature: 6.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLMKKRFLPMIIGFLFTFFFVNIFAIMIFANEVPSSEDKEYGETKNSIDKYIDGQLDKLD CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHCCCCCCCC INEIQDYINKEIVINDVNLKSFVKDLISGEKNILDLFNKDGLKILMFDEFKASLKVVAVI HHHHHHHCCCCEEEECCCHHHHHHHHHCCCHHHHHHHCCCCCEEEEEHHHHHHHHHHHHH LVLALLSSILKSLENSFSSGAVSQIATYIIFITMVSLTLIGFKDVLQICYDAIDHTVGLM HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QVIMPILITFLLLIGFPITSTTLNPIFIGGVTFINVFFKNFLFVSITVAFGILIINNLSK HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NIRLKRFFSFVKQINYVSIGAMFTVYLGLVSIQGLYVTSFDKFSVKTAKFAIGNFIPVVG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHH GFVSDSVDILLSSSQLIKNIFGGIGLILLVGICLLPVIKILSVIVVYKLAAIIVEPVGED HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH GISNFLNEVANLMIIMLASVIAITVMFFVTVAILTSISVVSQG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MLMKKRFLPMIIGFLFTFFFVNIFAIMIFANEVPSSEDKEYGETKNSIDKYIDGQLDKLD CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHCCCCCCCC INEIQDYINKEIVINDVNLKSFVKDLISGEKNILDLFNKDGLKILMFDEFKASLKVVAVI HHHHHHHCCCCEEEECCCHHHHHHHHHCCCHHHHHHHCCCCCEEEEEHHHHHHHHHHHHH LVLALLSSILKSLENSFSSGAVSQIATYIIFITMVSLTLIGFKDVLQICYDAIDHTVGLM HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QVIMPILITFLLLIGFPITSTTLNPIFIGGVTFINVFFKNFLFVSITVAFGILIINNLSK HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NIRLKRFFSFVKQINYVSIGAMFTVYLGLVSIQGLYVTSFDKFSVKTAKFAIGNFIPVVG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHH GFVSDSVDILLSSSQLIKNIFGGIGLILLVGICLLPVIKILSVIVVYKLAAIIVEPVGED HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH GISNFLNEVANLMIIMLASVIAITVMFFVTVAILTSISVVSQG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8969508; 9384377 [H]