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The map label for this gene is ydhO [H]

Identifier: 126698729

GI number: 126698729

Start: 1333890

End: 1335185

Strand: Direct

Name: ydhO [H]

Synonym: CD1135

Alternate gene names: 126698729

Gene position: 1333890-1335185 (Clockwise)

Preceding gene: 126698728

Following gene: 126698730

Centisome position: 31.09

GC content: 34.49

Gene sequence:

>1296_bases
TTGTTGGGGGGAGTGATAGTAGTGAAAAAAGCTATAGCAGCTTTAGGAATTGGGGCAGTAGCAGTATCTGTTAGCTCCAT
AAATGCAAGTGCTCTTGAAAAGGGAACAGTAACAGCAAGTGCCTTGAATATAAGAAGTGGACCAAGTTCTGATTGCGATA
AGGTAGCAAAATTATACAAGGGAAAAACTGTAGAGATTTTAGAAAAGTCTAATGGATGGTATAAAGTAAGGGTATCGAGT
TCTGTTGTTGGATGGGGAAGTGCAAAATACATATCAACAAGTGGTTCGTCTGAAGGTACATCAAGTCAAAATAATTCAAC
TTCAAGTGGGACAACTATTAGTGGAAATGGTAAAGTAAATGTGAGTTCTAGACTGAATGTAAGAAGTGGTGCAGGTACTA
ACTATTCATTAGTTGGTAAAGCAAATAATGGAGATGTAGTAAAGTTACTAGAACAAAGCAATGGATGGTATAAAATAAAA
CTATCAAATGGAGTTACTGGATGGGCTAGTAGCCAATATATCTCTAAAACATCAGAGGATGTTGGAACGAATAATTCTAG
TAATTCAAATAGTACTAATAATTCTGATAAAAAACCATCTAGCGAAGAATCAATTGAAGGCAAGAATGGTAAGGTAACAT
CTGCTGTGAGTTTAAATGTAAGAAGTGGTCCTGGGACAAGCTATTCTATAATAGGAAAATTAAATGGTGGAGATGTTGTT
GAATTAAAAGCTAAAAGTAATGGTTGGTATAAGGTAAAGTTATCGAGTGGAACAATTGGATGGGTGAGTGCCAGTTATAT
TTCTGAGACTAATGAGGATACAAAAGAAAAACCAAATTCATCATCTAACCAAAATTCTCAATCTAATAGTAACTCAAAGC
CATCATTTACTGGAAATTCAGATAAATCTACAGCAAAAGGTTCAACAATCGTAGATTTTGCATATACTCTTATTGGAATA
CCATATCAATGGGGAGCTTCAGGACCTGATAAATTTGACTGTTCTGGATTTACACAGTATGTTTTTAAACATTCTGTAGG
CGTTTCTATTCCTAGAGTTTCTAGAGAACAGGCTAATTTTGGAAGTGCAATTTCTATGGGGAATTATGCACCAGGAGATT
TAGTTTATTTTGACACTGATGGTGATGGAACAACTAATCATGTAGGTATATATGTAGGAAATAGTAAATTTATCCATTGT
AGTGGTACTCAGACTAATCCTAATAAGGTTAAAGTGGATAATTTAACTAGTTCATATTGGTCTAAAGTATTACTTGGTGC
AAGAAGATTTGTTTAG

Upstream 100 bases:

>100_bases
ATGTTTATAATTTCTTTACAATTAATAAGAAAATAAGTTATCATTAAATTGTAGGGACTAAAAATGGATAATAATGTTAT
GAATTTATGACTATAAAAAT

Downstream 100 bases:

>100_bases
TAAGTACAATTTCTTATTAAAAAATTAGAAGAAATAATTATTTATATTCATAAATTGTGACTCTTAAAAATATACTTTAT
TAATAATATAATTTTGGGAG

Product: cell wall hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 431; Mature: 431

Protein sequence:

>431_residues
MLGGVIVVKKAIAALGIGAVAVSVSSINASALEKGTVTASALNIRSGPSSDCDKVAKLYKGKTVEILEKSNGWYKVRVSS
SVVGWGSAKYISTSGSSEGTSSQNNSTSSGTTISGNGKVNVSSRLNVRSGAGTNYSLVGKANNGDVVKLLEQSNGWYKIK
LSNGVTGWASSQYISKTSEDVGTNNSSNSNSTNNSDKKPSSEESIEGKNGKVTSAVSLNVRSGPGTSYSIIGKLNGGDVV
ELKAKSNGWYKVKLSSGTIGWVSASYISETNEDTKEKPNSSSNQNSQSNSNSKPSFTGNSDKSTAKGSTIVDFAYTLIGI
PYQWGASGPDKFDCSGFTQYVFKHSVGVSIPRVSREQANFGSAISMGNYAPGDLVYFDTDGDGTTNHVGIYVGNSKFIHC
SGTQTNPNKVKVDNLTSSYWSKVLLGARRFV

Sequences:

>Translated_431_residues
MLGGVIVVKKAIAALGIGAVAVSVSSINASALEKGTVTASALNIRSGPSSDCDKVAKLYKGKTVEILEKSNGWYKVRVSS
SVVGWGSAKYISTSGSSEGTSSQNNSTSSGTTISGNGKVNVSSRLNVRSGAGTNYSLVGKANNGDVVKLLEQSNGWYKIK
LSNGVTGWASSQYISKTSEDVGTNNSSNSNSTNNSDKKPSSEESIEGKNGKVTSAVSLNVRSGPGTSYSIIGKLNGGDVV
ELKAKSNGWYKVKLSSGTIGWVSASYISETNEDTKEKPNSSSNQNSQSNSNSKPSFTGNSDKSTAKGSTIVDFAYTLIGI
PYQWGASGPDKFDCSGFTQYVFKHSVGVSIPRVSREQANFGSAISMGNYAPGDLVYFDTDGDGTTNHVGIYVGNSKFIHC
SGTQTNPNKVKVDNLTSSYWSKVLLGARRFV
>Mature_431_residues
MLGGVIVVKKAIAALGIGAVAVSVSSINASALEKGTVTASALNIRSGPSSDCDKVAKLYKGKTVEILEKSNGWYKVRVSS
SVVGWGSAKYISTSGSSEGTSSQNNSTSSGTTISGNGKVNVSSRLNVRSGAGTNYSLVGKANNGDVVKLLEQSNGWYKIK
LSNGVTGWASSQYISKTSEDVGTNNSSNSNSTNNSDKKPSSEESIEGKNGKVTSAVSLNVRSGPGTSYSIIGKLNGGDVV
ELKAKSNGWYKVKLSSGTIGWVSASYISETNEDTKEKPNSSSNQNSQSNSNSKPSFTGNSDKSTAKGSTIVDFAYTLIGI
PYQWGASGPDKFDCSGFTQYVFKHSVGVSIPRVSREQANFGSAISMGNYAPGDLVYFDTDGDGTTNHVGIYVGNSKFIHC
SGTQTNPNKVKVDNLTSSYWSKVLLGARRFV

Specific function: Unknown

COG id: COG0791

COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpC/p60 family [H]

Homologues:

Organism=Escherichia coli, GI1787944, Length=117, Percent_Identity=41.8803418803419, Blast_Score=101, Evalue=8e-23,
Organism=Escherichia coli, GI1788501, Length=124, Percent_Identity=36.2903225806452, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1786421, Length=188, Percent_Identity=26.063829787234, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1788001, Length=111, Percent_Identity=36.9369369369369, Blast_Score=74, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000064 [H]

Pfam domain/function: PF00877 NLPC_P60 [H]

EC number: NA

Molecular weight: Translated: 45124; Mature: 45124

Theoretical pI: Translated: 9.95; Mature: 9.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLGGVIVVKKAIAALGIGAVAVSVSSINASALEKGTVTASALNIRSGPSSDCDKVAKLYK
CCCCEEHHHHHHHHHCCCEEEEEEECCCHHHHCCCCEEEEEEEECCCCCCCHHHHHHHHC
GKTVEILEKSNGWYKVRVSSSVVGWGSAKYISTSGSSEGTSSQNNSTSSGTTISGNGKVN
CCEEEEEECCCCEEEEEECCEEECCCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCEEE
VSSRLNVRSGAGTNYSLVGKANNGDVVKLLEQSNGWYKIKLSNGVTGWASSQYISKTSED
EEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCCCHHHHHCCHH
VGTNNSSNSNSTNNSDKKPSSEESIEGKNGKVTSAVSLNVRSGPGTSYSIIGKLNGGDVV
CCCCCCCCCCCCCCCCCCCCCHHCCCCCCCEEEEEEEEEEECCCCCCEEEEEECCCCCEE
ELKAKSNGWYKVKLSSGTIGWVSASYISETNEDTKEKPNSSSNQNSQSNSNSKPSFTGNS
EEEECCCCEEEEEECCCCEEEEEEHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCC
DKSTAKGSTIVDFAYTLIGIPYQWGASGPDKFDCSGFTQYVFKHSVGVSIPRVSREQANF
CCCCCCCCCHHEEEHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHCCC
GSAISMGNYAPGDLVYFDTDGDGTTNHVGIYVGNSKFIHCSGTQTNPNKVKVDNLTSSYW
CCEEECCCCCCCCEEEEECCCCCCCCEEEEEECCCEEEEEECCCCCCCEEEECCCHHHHH
SKVLLGARRFV
HHHHHHHHHCC
>Mature Secondary Structure
MLGGVIVVKKAIAALGIGAVAVSVSSINASALEKGTVTASALNIRSGPSSDCDKVAKLYK
CCCCEEHHHHHHHHHCCCEEEEEEECCCHHHHCCCCEEEEEEEECCCCCCCHHHHHHHHC
GKTVEILEKSNGWYKVRVSSSVVGWGSAKYISTSGSSEGTSSQNNSTSSGTTISGNGKVN
CCEEEEEECCCCEEEEEECCEEECCCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCEEE
VSSRLNVRSGAGTNYSLVGKANNGDVVKLLEQSNGWYKIKLSNGVTGWASSQYISKTSED
EEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCCCHHHHHCCHH
VGTNNSSNSNSTNNSDKKPSSEESIEGKNGKVTSAVSLNVRSGPGTSYSIIGKLNGGDVV
CCCCCCCCCCCCCCCCCCCCCHHCCCCCCCEEEEEEEEEEECCCCCCEEEEEECCCCCEE
ELKAKSNGWYKVKLSSGTIGWVSASYISETNEDTKEKPNSSSNQNSQSNSNSKPSFTGNS
EEEECCCCEEEEEECCCCEEEEEEHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCC
DKSTAKGSTIVDFAYTLIGIPYQWGASGPDKFDCSGFTQYVFKHSVGVSIPRVSREQANF
CCCCCCCCCHHEEEHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHCCC
GSAISMGNYAPGDLVYFDTDGDGTTNHVGIYVGNSKFIHCSGTQTNPNKVKVDNLTSSYW
CCEEECCCCCCCCEEEEECCCCCCCCEEEEEECCCEEEEEECCCCCCCEEEECCCHHHHH
SKVLLGARRFV
HHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]