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The map label for this gene is xtmB [H]

Identifier: 126698524

GI number: 126698524

Start: 1113303

End: 1114544

Strand: Direct

Name: xtmB [H]

Synonym: CD0944

Alternate gene names: 126698524

Gene position: 1113303-1114544 (Clockwise)

Preceding gene: 126698523

Following gene: 126698525

Centisome position: 25.95

GC content: 30.84

Gene sequence:

>1242_bases
ATGATAGTTAGAGTAAATTTTAATCCAGATTTCAAGGAAGCTAATTTTACTAAAAAAAGATACAGAGCAATGAAAGGTTC
AGCAGGAAGTGGAAAATCTGTTAATGTAGCACAAGACTATATACTAAAGTTAGGAGATAAGAAGTATCAAGGAGCTAATC
TATTAGTAGTTAGAAAGTCAGAAGCTACACATAAGTATTCAACGTATGCAGAGCTTACAGGAGCTATAAATCGTATTTAT
GGTAAACAAGCTGATAAGTATTGGAAAACTACTTTAAATCCTTTAGAAATTAAGAGTAAAGTTACTGGTAACTCTATAAT
TTTCAGAGGAGTTAATGATGCAAAACAAAGAGAAAAATTAAAATCAATTAACTTCTCGAAAGGAAAATTAACATGGGTTT
GGTGTGAAGAAGCTACAGAACTTATGGAAAGTGACATAGACATACTAGATGACCGTTTAAGAGGTATTTTAACTAATCCT
AACTTGTATTATCAAATGACATTTACATTTAATCCAGTCTCAGCTACTCATTGGATAAAAAGAAAGTATTTTGACTATAA
AAATGATGATATATTTACTCATCATAGTACTTATCTACAAAATAGATTCATAGATGAAGCTTACTACAGAAGAATGCAAA
TGAGAAAAGAGCAAGACCCAGAAGGGTACAAAGTCTATGGTCTTGGAGAATGGGGAGAAACTGGTGGAGCAATACTTAAA
AATTATGTTATACATGAATTTCCTACAGAATTTGAGTATTTTGACAATATGAGGTTATCACAAGACTTTGGATTTAACCA
TGCAAATGTAGTACTTAGAATTGGCTTTAAGGATGGAGAATTATATATATGTAATGAAATATATGTACATGAAATGGATA
CTTCAGAAATCATAAAGATTGCAAATAGTAGAGGTTTAGAAAAGACTCTATTTATGTACTGTGATAGTGCTGAACCAGAT
AGAATTAAGATGTGGAAGAGTGCAGGATATAAAGCTAAAGGAGTTAAAAAAGGACCAGGAAGTGTTAAAGCTCAAATAGA
TTATTTGAAACAATTAAGAATACATGTACATCCTAGCTGCACTAATACCATAAAAGAAATACAACAATGGAAATGGAAAC
AAGATGAAAGAACTGGATTATATCTTGATGAACCAGTTGAGTTTATGGATGATGCAATGGCTGCGCTTAGATATTCTATA
GATAATAAGCTTAAAAATAATGGAATAAGCTTCTTAAAGTAA

Upstream 100 bases:

>100_bases
AAAAATAGAGTTGAGAAGTTGAAATGTGAAGTTAATAACCTAAGTAAAGATGATATTGGAGATGATGAGTTGAAAATAAG
TGTAGATTATGGTGATAGAA

Downstream 100 bases:

>100_bases
AGGAGGTGTTAAATATTTATATAAGTGAAACAGATTTAATAAAAGTTCAGTTAAAAAAAGAGAGCACCTTTAACCTAGTA
AAAGTCATAGAGCATTATAT

Product: phage terminase, large subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 413; Mature: 413

Protein sequence:

>413_residues
MIVRVNFNPDFKEANFTKKRYRAMKGSAGSGKSVNVAQDYILKLGDKKYQGANLLVVRKSEATHKYSTYAELTGAINRIY
GKQADKYWKTTLNPLEIKSKVTGNSIIFRGVNDAKQREKLKSINFSKGKLTWVWCEEATELMESDIDILDDRLRGILTNP
NLYYQMTFTFNPVSATHWIKRKYFDYKNDDIFTHHSTYLQNRFIDEAYYRRMQMRKEQDPEGYKVYGLGEWGETGGAILK
NYVIHEFPTEFEYFDNMRLSQDFGFNHANVVLRIGFKDGELYICNEIYVHEMDTSEIIKIANSRGLEKTLFMYCDSAEPD
RIKMWKSAGYKAKGVKKGPGSVKAQIDYLKQLRIHVHPSCTNTIKEIQQWKWKQDERTGLYLDEPVEFMDDAMAALRYSI
DNKLKNNGISFLK

Sequences:

>Translated_413_residues
MIVRVNFNPDFKEANFTKKRYRAMKGSAGSGKSVNVAQDYILKLGDKKYQGANLLVVRKSEATHKYSTYAELTGAINRIY
GKQADKYWKTTLNPLEIKSKVTGNSIIFRGVNDAKQREKLKSINFSKGKLTWVWCEEATELMESDIDILDDRLRGILTNP
NLYYQMTFTFNPVSATHWIKRKYFDYKNDDIFTHHSTYLQNRFIDEAYYRRMQMRKEQDPEGYKVYGLGEWGETGGAILK
NYVIHEFPTEFEYFDNMRLSQDFGFNHANVVLRIGFKDGELYICNEIYVHEMDTSEIIKIANSRGLEKTLFMYCDSAEPD
RIKMWKSAGYKAKGVKKGPGSVKAQIDYLKQLRIHVHPSCTNTIKEIQQWKWKQDERTGLYLDEPVEFMDDAMAALRYSI
DNKLKNNGISFLK
>Mature_413_residues
MIVRVNFNPDFKEANFTKKRYRAMKGSAGSGKSVNVAQDYILKLGDKKYQGANLLVVRKSEATHKYSTYAELTGAINRIY
GKQADKYWKTTLNPLEIKSKVTGNSIIFRGVNDAKQREKLKSINFSKGKLTWVWCEEATELMESDIDILDDRLRGILTNP
NLYYQMTFTFNPVSATHWIKRKYFDYKNDDIFTHHSTYLQNRFIDEAYYRRMQMRKEQDPEGYKVYGLGEWGETGGAILK
NYVIHEFPTEFEYFDNMRLSQDFGFNHANVVLRIGFKDGELYICNEIYVHEMDTSEIIKIANSRGLEKTLFMYCDSAEPD
RIKMWKSAGYKAKGVKKGPGSVKAQIDYLKQLRIHVHPSCTNTIKEIQQWKWKQDERTGLYLDEPVEFMDDAMAALRYSI
DNKLKNNGISFLK

Specific function: Functions as a terminase [H]

COG id: COG1783

COG function: function code R; Phage terminase large subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis yqaT and phage SPP1 terminase large subunit [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006701
- InterPro:   IPR006437 [H]

Pfam domain/function: PF04466 Terminase_3 [H]

EC number: NA

Molecular weight: Translated: 48167; Mature: 48167

Theoretical pI: Translated: 9.46; Mature: 9.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIVRVNFNPDFKEANFTKKRYRAMKGSAGSGKSVNVAQDYILKLGDKKYQGANLLVVRKS
CEEEEECCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEEECC
EATHKYSTYAELTGAINRIYGKQADKYWKTTLNPLEIKSKVTGNSIIFRGVNDAKQREKL
CCCCHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHEECCCCEEEEECCCHHHHHHHH
KSINFSKGKLTWVWCEEATELMESDIDILDDRLRGILTNPNLYYQMTFTFNPVSATHWIK
HCCCCCCCCEEEEEHHHHHHHHHCCHHHHHHHHHEEECCCCEEEEEEEEECCCCHHHHHH
RKYFDYKNDDIFTHHSTYLQNRFIDEAYYRRMQMRKEQDPEGYKVYGLGEWGETGGAILK
HHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHH
NYVIHEFPTEFEYFDNMRLSQDFGFNHANVVLRIGFKDGELYICNEIYVHEMDTSEIIKI
HHHHHCCCCHHHHHCCCEECCCCCCCCCEEEEEEEECCCCEEEEEEEEEEECCHHHHHHH
ANSRGLEKTLFMYCDSAEPDRIKMWKSAGYKAKGVKKGPGSVKAQIDYLKQLRIHVHPSC
HCCCCCCEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHEEEEECCCH
TNTIKEIQQWKWKQDERTGLYLDEPVEFMDDAMAALRYSIDNKLKNNGISFLK
HHHHHHHHHHCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MIVRVNFNPDFKEANFTKKRYRAMKGSAGSGKSVNVAQDYILKLGDKKYQGANLLVVRKS
CEEEEECCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEEECC
EATHKYSTYAELTGAINRIYGKQADKYWKTTLNPLEIKSKVTGNSIIFRGVNDAKQREKL
CCCCHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHEECCCCEEEEECCCHHHHHHHH
KSINFSKGKLTWVWCEEATELMESDIDILDDRLRGILTNPNLYYQMTFTFNPVSATHWIK
HCCCCCCCCEEEEEHHHHHHHHHCCHHHHHHHHHEEECCCCEEEEEEEEECCCCHHHHHH
RKYFDYKNDDIFTHHSTYLQNRFIDEAYYRRMQMRKEQDPEGYKVYGLGEWGETGGAILK
HHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHH
NYVIHEFPTEFEYFDNMRLSQDFGFNHANVVLRIGFKDGELYICNEIYVHEMDTSEIIKI
HHHHHCCCCHHHHHCCCEECCCCCCCCCEEEEEEEECCCCEEEEEEEEEEECCHHHHHHH
ANSRGLEKTLFMYCDSAEPDRIKMWKSAGYKAKGVKKGPGSVKAQIDYLKQLRIHVHPSC
HCCCCCCEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHEEEEECCCH
TNTIKEIQQWKWKQDERTGLYLDEPVEFMDDAMAALRYSIDNKLKNNGISFLK
HHHHHHHHHHCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377; 8083174 [H]