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The map label for this gene is ydhC [H]

Identifier: 126698464

GI number: 126698464

Start: 1068780

End: 1069433

Strand: Direct

Name: ydhC [H]

Synonym: CD0887

Alternate gene names: 126698464

Gene position: 1068780-1069433 (Clockwise)

Preceding gene: 126698463

Following gene: 126698465

Centisome position: 24.91

GC content: 29.66

Gene sequence:

>654_bases
ATGAAGGTAGATCCACTTACAACTCAAGTATATGACTATATATCAAAGAAAATCCAAAATGGAGAATATGAAGCTAATCA
GAGAATTACTGAATCTGAGATTTGTAAATCTATCGGAGTTAGTAGAACACCAGCGAGAGAAGCATTAACTAGGTTAGCAG
GTGAAAATTTACTAGAAAAAATACCTAATAAGGGATTTGTAGTAAAAGAATTTCAGGAAAAGGAGAAATTAGACACCTAT
TCCGTAATTGGAGTATTGGATGCGTTAGCCGGTTCTTCAGCATTACAAAATTTAACTGAATCAGACCTAGTAAAAATGGA
AGAATTAACAGAAATGATGGCGGTCTCTATAAAGTATAAAAATTACAATAGCTATTTAAAATTAAGTAATGAATTTCACG
ATATATACATAACTAAATCAGATAATCAGGTGTTAGTAAATCTATTGAACTCTTTAAGATATAATTTTATGTCAAAGTCA
TATACTAGTGATAATGAAGATGAGTTATATAAAATGTTGACATACAGCAATAATCAACATATTGAAGTAGTAAAATCTAT
GAGGGAGAATGATTTAGAAAATGTTGAAAGAGTTTTGAGAGAACATTGGAAAACGATACCTATAGCAGAGATGAAAAAAG
AGAAGCTTTTATAA

Upstream 100 bases:

>100_bases
ATAATTGTGATATTATATAAATTAGTAAGATAAAACTGAACTCTCTACCAAAGTTGTAGGGAGATTTAACTTTTATAATC
TTAATATGGAGGAACGTCTT

Downstream 100 bases:

>100_bases
AGTTTCTCTTTATTTTTTTTATAATTTTGTTGTTTTACTATTAAATATTAAAGGAAAAACAAGAATAAATTTAACTTTAA
ATACAAATAAAAACTCTAAG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 217; Mature: 217

Protein sequence:

>217_residues
MKVDPLTTQVYDYISKKIQNGEYEANQRITESEICKSIGVSRTPAREALTRLAGENLLEKIPNKGFVVKEFQEKEKLDTY
SVIGVLDALAGSSALQNLTESDLVKMEELTEMMAVSIKYKNYNSYLKLSNEFHDIYITKSDNQVLVNLLNSLRYNFMSKS
YTSDNEDELYKMLTYSNNQHIEVVKSMRENDLENVERVLREHWKTIPIAEMKKEKLL

Sequences:

>Translated_217_residues
MKVDPLTTQVYDYISKKIQNGEYEANQRITESEICKSIGVSRTPAREALTRLAGENLLEKIPNKGFVVKEFQEKEKLDTY
SVIGVLDALAGSSALQNLTESDLVKMEELTEMMAVSIKYKNYNSYLKLSNEFHDIYITKSDNQVLVNLLNSLRYNFMSKS
YTSDNEDELYKMLTYSNNQHIEVVKSMRENDLENVERVLREHWKTIPIAEMKKEKLL
>Mature_217_residues
MKVDPLTTQVYDYISKKIQNGEYEANQRITESEICKSIGVSRTPAREALTRLAGENLLEKIPNKGFVVKEFQEKEKLDTY
SVIGVLDALAGSSALQNLTESDLVKMEELTEMMAVSIKYKNYNSYLKLSNEFHDIYITKSDNQVLVNLLNSLRYNFMSKS
YTSDNEDELYKMLTYSNNQHIEVVKSMRENDLENVERVLREHWKTIPIAEMKKEKLL

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=207, Percent_Identity=22.7053140096618, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 25168; Mature: 25168

Theoretical pI: Translated: 5.22; Mature: 5.22

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVDPLTTQVYDYISKKIQNGEYEANQRITESEICKSIGVSRTPAREALTRLAGENLLEK
CCCCCHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
IPNKGFVVKEFQEKEKLDTYSVIGVLDALAGSSALQNLTESDLVKMEELTEMMAVSIKYK
CCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCHHHHHHHHHHHHHHHHHHHCC
NYNSYLKLSNEFHDIYITKSDNQVLVNLLNSLRYNFMSKSYTSDNEDELYKMLTYSNNQH
CCCCHHEECCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCH
IEVVKSMRENDLENVERVLREHWKTIPIAEMKKEKLL
HHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHCC
>Mature Secondary Structure
MKVDPLTTQVYDYISKKIQNGEYEANQRITESEICKSIGVSRTPAREALTRLAGENLLEK
CCCCCHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
IPNKGFVVKEFQEKEKLDTYSVIGVLDALAGSSALQNLTESDLVKMEELTEMMAVSIKYK
CCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCHHHHHHHHHHHHHHHHHHHCC
NYNSYLKLSNEFHDIYITKSDNQVLVNLLNSLRYNFMSKSYTSDNEDELYKMLTYSNNQH
CCCCHHEECCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCH
IEVVKSMRENDLENVERVLREHWKTIPIAEMKKEKLL
HHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]