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The map label for this gene is oppC [H]

Identifier: 126698434

GI number: 126698434

Start: 1029438

End: 1030349

Strand: Direct

Name: oppC [H]

Synonym: CD0854

Alternate gene names: 126698434

Gene position: 1029438-1030349 (Clockwise)

Preceding gene: 126698433

Following gene: 126698435

Centisome position: 23.99

GC content: 29.28

Gene sequence:

>912_bases
ATGAAGCCACAATATAGTGATTTTGAAATTGTAGGAGAAAATTATATTTTAGTAGCAGAAGATGAACATATAGAAACAAA
GAAAACCTTATCTAAAAAAATTAAAGAATTACCATATATATCAATTATTATTTTATCAATCATAGTCATTGGAAGTGTAT
TCTCATCTTTTATAATGACACATGAACCAACATACATGGATTTAGCAAGTTCTAATTTAGCTCCAAATAAAACTTTTTTA
TTTGGAACAGACTCAATGGGTAGAGATATATATTCTATGATATGGTATGGAGGAAAAATATCTTTATTTATAGGACTATT
TTCCACTGTAATATCAACTGTTATAGGAATTGTTTATGGTAGTATAAGTGGTTCAGCATCTGAACTTGTAGATGATGCAA
TGATGAGGTTTACAGAAATCATACTTAGTATACCTTCAATATTAATTATAATATTTGTACAAGCTATACTTGGAAATTCA
AATCCAGTATCTATGTCCATAGTAATAGGGATAACAAGTTGGATGAATATATCTAAGATAGTGAGAACAGAAGTTAGACA
AATAAAAAATAGCGAATACATACTAGCAGCTAAGAGCATGGGAGGAGGATTCTTCTATGTATTAAAGCAACATTTACTTC
CAAATTTTGTGGCATCAATAATGTTCATGGTTGTAACAAACATAGGCGCAGCTATTGGTACTGAATCGACACTTAGCTTT
TTAGGAATTGGTTTACCAATAGAAATTGTTTCTTGGGGAAGCATGTTATCTTTGTCGGAGGAAGCATTACTTTCAAATAG
ATGGTGGATTATACTGATTCCGGGTATATTTTTGGTTACCACATTGGTGTGTATAACAAATATAGGTAATTATATAAGAA
AGAATAATAATAAAAAATCTAGTAATTTATAA

Upstream 100 bases:

>100_bases
TGCTTAATAACAGGGGCTTTAGTAGTATTTGGGAATATGTTAGCTCAAATTATAAACAATAAAATAGACCCTAGAATGAA
ATATGATAGAGGTGATACTA

Downstream 100 bases:

>100_bases
ATCAGCATTTGAGTATTAAATAAGCAAATACTGAGGTATTTGAAATATCTATTTAAATAAATGGGGTCAAAGCTTTGAAA
AATATTTTATAAAAAGCAAA

Product: oligopeptide ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 303; Mature: 303

Protein sequence:

>303_residues
MKPQYSDFEIVGENYILVAEDEHIETKKTLSKKIKELPYISIIILSIIVIGSVFSSFIMTHEPTYMDLASSNLAPNKTFL
FGTDSMGRDIYSMIWYGGKISLFIGLFSTVISTVIGIVYGSISGSASELVDDAMMRFTEIILSIPSILIIIFVQAILGNS
NPVSMSIVIGITSWMNISKIVRTEVRQIKNSEYILAAKSMGGGFFYVLKQHLLPNFVASIMFMVVTNIGAAIGTESTLSF
LGIGLPIEIVSWGSMLSLSEEALLSNRWWIILIPGIFLVTTLVCITNIGNYIRKNNNKKSSNL

Sequences:

>Translated_303_residues
MKPQYSDFEIVGENYILVAEDEHIETKKTLSKKIKELPYISIIILSIIVIGSVFSSFIMTHEPTYMDLASSNLAPNKTFL
FGTDSMGRDIYSMIWYGGKISLFIGLFSTVISTVIGIVYGSISGSASELVDDAMMRFTEIILSIPSILIIIFVQAILGNS
NPVSMSIVIGITSWMNISKIVRTEVRQIKNSEYILAAKSMGGGFFYVLKQHLLPNFVASIMFMVVTNIGAAIGTESTLSF
LGIGLPIEIVSWGSMLSLSEEALLSNRWWIILIPGIFLVTTLVCITNIGNYIRKNNNKKSSNL
>Mature_303_residues
MKPQYSDFEIVGENYILVAEDEHIETKKTLSKKIKELPYISIIILSIIVIGSVFSSFIMTHEPTYMDLASSNLAPNKTFL
FGTDSMGRDIYSMIWYGGKISLFIGLFSTVISTVIGIVYGSISGSASELVDDAMMRFTEIILSIPSILIIIFVQAILGNS
NPVSMSIVIGITSWMNISKIVRTEVRQIKNSEYILAAKSMGGGFFYVLKQHLLPNFVASIMFMVVTNIGAAIGTESTLSF
LGIGLPIEIVSWGSMLSLSEEALLSNRWWIILIPGIFLVTTLVCITNIGNYIRKNNNKKSSNL

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane. Is expressed to facilitate adaptation to nutrient deficiency conditions, which also induce sporulation

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787760, Length=270, Percent_Identity=29.2592592592593, Blast_Score=130, Evalue=1e-31,
Organism=Escherichia coli, GI1787054, Length=258, Percent_Identity=30.2325581395349, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1787498, Length=262, Percent_Identity=32.0610687022901, Blast_Score=111, Evalue=7e-26,
Organism=Escherichia coli, GI1788505, Length=203, Percent_Identity=31.5270935960591, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1789889, Length=241, Percent_Identity=24.896265560166, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1789964, Length=255, Percent_Identity=27.0588235294118, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1787549, Length=221, Percent_Identity=25.7918552036199, Blast_Score=81, Evalue=7e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33455; Mature: 33455

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPQYSDFEIVGENYILVAEDEHIETKKTLSKKIKELPYISIIILSIIVIGSVFSSFIMT
CCCCCCCEEEECCCEEEEECCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHC
HEPTYMDLASSNLAPNKTFLFGTDSMGRDIYSMIWYGGKISLFIGLFSTVISTVIGIVYG
CCCCHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
SISGSASELVDDAMMRFTEIILSIPSILIIIFVQAILGNSNPVSMSIVIGITSWMNISKI
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEHHHHHHHHH
VRTEVRQIKNSEYILAAKSMGGGFFYVLKQHLLPNFVASIMFMVVTNIGAAIGTESTLSF
HHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
LGIGLPIEIVSWGSMLSLSEEALLSNRWWIILIPGIFLVTTLVCITNIGNYIRKNNNKKS
HHCCCCCEEECCCCHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHCCCCCCC
SNL
CCC
>Mature Secondary Structure
MKPQYSDFEIVGENYILVAEDEHIETKKTLSKKIKELPYISIIILSIIVIGSVFSSFIMT
CCCCCCCEEEECCCEEEEECCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHC
HEPTYMDLASSNLAPNKTFLFGTDSMGRDIYSMIWYGGKISLFIGLFSTVISTVIGIVYG
CCCCHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
SISGSASELVDDAMMRFTEIILSIPSILIIIFVQAILGNSNPVSMSIVIGITSWMNISKI
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEHHHHHHHHH
VRTEVRQIKNSEYILAAKSMGGGFFYVLKQHLLPNFVASIMFMVVTNIGAAIGTESTLSF
HHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
LGIGLPIEIVSWGSMLSLSEEALLSNRWWIILIPGIFLVTTLVCITNIGNYIRKNNNKKS
HHCCCCCEEECCCCHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHCCCCCCC
SNL
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1766370; 9384377; 3145906 [H]