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The map label for this gene is oppB [H]

Identifier: 126698433

GI number: 126698433

Start: 1028468

End: 1029454

Strand: Direct

Name: oppB [H]

Synonym: CD0853

Alternate gene names: 126698433

Gene position: 1028468-1029454 (Clockwise)

Preceding gene: 126698430

Following gene: 126698434

Centisome position: 23.97

GC content: 28.98

Gene sequence:

>987_bases
TTGTTAAAGGATATATTGAAAAAGTTGTTGCAGTTTATTTTAGTAATGTTTTTATTATCTTTTATTGTTTTTTACATGGC
AAGACTTGCTCCAGGAGACCCATTAATCTCTTACTATGGGGATGGAGTAGAAAGAATGAGTACACAAGAAAAAGAAAATG
CTATGAAAAAACTTGGTTTGGATGAACCAATATACAGTCAATATATAAAATGGATTTCAAATGCATCAAAAGGGGAATTT
GGAATTTCATTTAAATATAAACAAAATGTTACTTCTGTTATAAATGATGTCTATATAAACACTATAATATTAGGTGGTTC
AGGATATATACTTACCTTTGTGCTAGCCTTATTGTTAGGAATATTTTGTACATTACATGAAGATAAGCTCATTGATAGAA
TCATATGCAAATTAGGAACAATAACCAACTGTATTCCATCATTTTGGGTTGCCTTAGTACTCATACTTATATTTAGTATA
AACTTAAGTATACTTCCAAGTAGTGGTGCTTATTCAATGGGAGAAGAGTCCAGTATATTAAGTAGGATATCACATCTAAT
CTTACCTCTTACAGTACTTATATTAAGCCATCTATGGTATTACACATATATGATAAGAAATAAATTACTAGAGGAAATAA
GAGAAGATTATGTGCTTTTATGTAAAGCAAAAGGTTTAAATAATAGAACTATTGTTTTTAAGCATTGCCTGAGAAATATA
ATGCCATCATATATTAGTATAATGGCCATTTCGATACCTCATATACTAGGAGGAACTTATGTAGTTGAAAAAGTTTTTTC
TTATCCTGGGTTAGGAACACTTTGTTTTGAAAGTGCAAAGTATCATGATTATAATATGTTATTAGTTTTATGCTTAATAA
CAGGGGCTTTAGTAGTATTTGGGAATATGTTAGCTCAAATTATAAACAATAAAATAGACCCTAGAATGAAATATGATAGA
GGTGATACTAATGAAGCCACAATATAG

Upstream 100 bases:

>100_bases
TTTAATTTTGTTTAATGATAATGGAACCACGAAGGTTTTAACGTTACTTTACGTTTGCTTTTATGTGGTTTTTTTTATTG
CAACAAAGGGGGGTTGGGGT

Downstream 100 bases:

>100_bases
TGATTTTGAAATTGTAGGAGAAAATTATATTTTAGTAGCAGAAGATGAACATATAGAAACAAAGAAAACCTTATCTAAAA
AAATTAAAGAATTACCATAT

Product: oligopeptide ABC transporter permease

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 328; Mature: 328

Protein sequence:

>328_residues
MLKDILKKLLQFILVMFLLSFIVFYMARLAPGDPLISYYGDGVERMSTQEKENAMKKLGLDEPIYSQYIKWISNASKGEF
GISFKYKQNVTSVINDVYINTIILGGSGYILTFVLALLLGIFCTLHEDKLIDRIICKLGTITNCIPSFWVALVLILIFSI
NLSILPSSGAYSMGEESSILSRISHLILPLTVLILSHLWYYTYMIRNKLLEEIREDYVLLCKAKGLNNRTIVFKHCLRNI
MPSYISIMAISIPHILGGTYVVEKVFSYPGLGTLCFESAKYHDYNMLLVLCLITGALVVFGNMLAQIINNKIDPRMKYDR
GDTNEATI

Sequences:

>Translated_328_residues
MLKDILKKLLQFILVMFLLSFIVFYMARLAPGDPLISYYGDGVERMSTQEKENAMKKLGLDEPIYSQYIKWISNASKGEF
GISFKYKQNVTSVINDVYINTIILGGSGYILTFVLALLLGIFCTLHEDKLIDRIICKLGTITNCIPSFWVALVLILIFSI
NLSILPSSGAYSMGEESSILSRISHLILPLTVLILSHLWYYTYMIRNKLLEEIREDYVLLCKAKGLNNRTIVFKHCLRNI
MPSYISIMAISIPHILGGTYVVEKVFSYPGLGTLCFESAKYHDYNMLLVLCLITGALVVFGNMLAQIINNKIDPRMKYDR
GDTNEATI
>Mature_328_residues
MLKDILKKLLQFILVMFLLSFIVFYMARLAPGDPLISYYGDGVERMSTQEKENAMKKLGLDEPIYSQYIKWISNASKGEF
GISFKYKQNVTSVINDVYINTIILGGSGYILTFVLALLLGIFCTLHEDKLIDRIICKLGTITNCIPSFWVALVLILIFSI
NLSILPSSGAYSMGEESSILSRISHLILPLTVLILSHLWYYTYMIRNKLLEEIREDYVLLCKAKGLNNRTIVFKHCLRNI
MPSYISIMAISIPHILGGTYVVEKVFSYPGLGTLCFESAKYHDYNMLLVLCLITGALVVFGNMLAQIINNKIDPRMKYDR
GDTNEATI

Specific function: This protein is a component of an oligopeptide permease, a binding protein-dependent transport system. This APP system can completely substitute for the OPP system in both sporulation and genetic competence, though, unlike OPP, is incapable of transportin

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787497, Length=319, Percent_Identity=30.0940438871473, Blast_Score=162, Evalue=3e-41,
Organism=Escherichia coli, GI1787053, Length=318, Percent_Identity=29.559748427673, Blast_Score=161, Evalue=6e-41,
Organism=Escherichia coli, GI1789888, Length=324, Percent_Identity=28.7037037037037, Blast_Score=154, Evalue=8e-39,
Organism=Escherichia coli, GI1789965, Length=341, Percent_Identity=24.9266862170088, Blast_Score=151, Evalue=6e-38,
Organism=Escherichia coli, GI1787761, Length=335, Percent_Identity=25.9701492537313, Blast_Score=128, Evalue=5e-31,
Organism=Escherichia coli, GI1788504, Length=358, Percent_Identity=23.7430167597765, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1787550, Length=272, Percent_Identity=23.8970588235294, Blast_Score=100, Evalue=1e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 37167; Mature: 37167

Theoretical pI: Translated: 8.42; Mature: 8.42

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKDILKKLLQFILVMFLLSFIVFYMARLAPGDPLISYYGDGVERMSTQEKENAMKKLGL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHCCC
DEPIYSQYIKWISNASKGEFGISFKYKQNVTSVINDVYINTIILGGSGYILTFVLALLLG
CCHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHH
IFCTLHEDKLIDRIICKLGTITNCIPSFWVALVLILIFSINLSILPSSGAYSMGEESSIL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEECCCCCCCCCCHHHHH
SRISHLILPLTVLILSHLWYYTYMIRNKLLEEIREDYVLLCKAKGLNNRTIVFKHCLRNI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCHHHHHHHHHHH
MPSYISIMAISIPHILGGTYVVEKVFSYPGLGTLCFESAKYHDYNMLLVLCLITGALVVF
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
GNMLAQIINNKIDPRMKYDRGDTNEATI
HHHHHHHHCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLKDILKKLLQFILVMFLLSFIVFYMARLAPGDPLISYYGDGVERMSTQEKENAMKKLGL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHCCC
DEPIYSQYIKWISNASKGEFGISFKYKQNVTSVINDVYINTIILGGSGYILTFVLALLLG
CCHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHH
IFCTLHEDKLIDRIICKLGTITNCIPSFWVALVLILIFSINLSILPSSGAYSMGEESSIL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEECCCCCCCCCCHHHHH
SRISHLILPLTVLILSHLWYYTYMIRNKLLEEIREDYVLLCKAKGLNNRTIVFKHCLRNI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCHHHHHHHHHHH
MPSYISIMAISIPHILGGTYVVEKVFSYPGLGTLCFESAKYHDYNMLLVLCLITGALVVF
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
GNMLAQIINNKIDPRMKYDRGDTNEATI
HHHHHHHHCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7997159; 9384377 [H]