| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is 126698419
Identifier: 126698419
GI number: 126698419
Start: 1014736
End: 1015422
Strand: Direct
Name: 126698419
Synonym: CD0839
Alternate gene names: NA
Gene position: 1014736-1015422 (Clockwise)
Preceding gene: 126698418
Following gene: 126698420
Centisome position: 23.65
GC content: 22.85
Gene sequence:
>687_bases ATGAAGTATAGTTACAAAAAATGCATAATAGATTCTATTTTATTGATGTTTATAGTTCAAATATTAAGGATGATTTTGAA TTATGTACTTCTAAGTCAATTTGAATTTACTCTTGAAAATTTTAATATTATAAACTTAATTTCTTTTACATTAGTTGGTT TATCGTTAATTTTATTTTTAAAAGATAATTCTTTGTATAACAAGGTTAGAAATAGAAAAATCACAGAAGCTTTTGAAGAA AATAAAAACAATATACTTATTGAAAAGTGTAAGCTGATACTTTTTGTTGTGGTTTTATCTTTAGCAATAATTGTAACTTA TTGTACTAAGGGATATGTACTTTTTAATGTAACTATGATGACTTTGTCTGTATTGATAGTTCCAATATTTGAAGAGTTAT TTTTTAGAGAATATATATGGAACTATCTAAGTAATTTTATAAAGTCAAAGAGTAAAATTATCTGTATAACATCTATACTA TCTGGAATTTATAATATAGGATACATAGATGTTATAAGAAATTATGTAATATTGTATAACAATTCAAGCTACACCTTTGA AGTTATTATTTCAAAAATTATGATAGGTACTGTTTTTGGTATTGTACTTGGATTAGTTAAGTATAGGTTTAGAGATGTAG GGTTTTGTATATTATTGAGGAGCTTATTTGCTATATTTATTAGGTAG
Upstream 100 bases:
>100_bases TAAAGAAATTTCAAATCAAACAAGTTGGAGCAAAGCAACTGTAAGTAGGGTATTAAATGGACTTTACGATTAGCATATAC ATGGGGTGATTTAAATTGGG
Downstream 100 bases:
>100_bases ATAGTATAATCGGTTTATAAGGTTGTTTTAAATTTAATTTTAAATCAACCTTATTTTATTTGTGTTTTATAAAGCACTTA TATATTAATAACTAATAAAT
Product: membrane-associated CAAX amino terminal protease
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 228; Mature: 228
Protein sequence:
>228_residues MKYSYKKCIIDSILLMFIVQILRMILNYVLLSQFEFTLENFNIINLISFTLVGLSLILFLKDNSLYNKVRNRKITEAFEE NKNNILIEKCKLILFVVVLSLAIIVTYCTKGYVLFNVTMMTLSVLIVPIFEELFFREYIWNYLSNFIKSKSKIICITSIL SGIYNIGYIDVIRNYVILYNNSSYTFEVIISKIMIGTVFGIVLGLVKYRFRDVGFCILLRSLFAIFIR
Sequences:
>Translated_228_residues MKYSYKKCIIDSILLMFIVQILRMILNYVLLSQFEFTLENFNIINLISFTLVGLSLILFLKDNSLYNKVRNRKITEAFEE NKNNILIEKCKLILFVVVLSLAIIVTYCTKGYVLFNVTMMTLSVLIVPIFEELFFREYIWNYLSNFIKSKSKIICITSIL SGIYNIGYIDVIRNYVILYNNSSYTFEVIISKIMIGTVFGIVLGLVKYRFRDVGFCILLRSLFAIFIR >Mature_228_residues MKYSYKKCIIDSILLMFIVQILRMILNYVLLSQFEFTLENFNIINLISFTLVGLSLILFLKDNSLYNKVRNRKITEAFEE NKNNILIEKCKLILFVVVLSLAIIVTYCTKGYVLFNVTMMTLSVLIVPIFEELFFREYIWNYLSNFIKSKSKIICITSIL SGIYNIGYIDVIRNYVILYNNSSYTFEVIISKIMIGTVFGIVLGLVKYRFRDVGFCILLRSLFAIFIR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26701; Mature: 26701
Theoretical pI: Translated: 9.62; Mature: 9.62
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKYSYKKCIIDSILLMFIVQILRMILNYVLLSQFEFTLENFNIINLISFTLVGLSLILFL CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH KDNSLYNKVRNRKITEAFEENKNNILIEKCKLILFVVVLSLAIIVTYCTKGYVLFNVTMM CCCHHHHHHHCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH TLSVLIVPIFEELFFREYIWNYLSNFIKSKSKIICITSILSGIYNIGYIDVIRNYVILYN HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHCEEEEEC NSSYTFEVIISKIMIGTVFGIVLGLVKYRFRDVGFCILLRSLFAIFIR CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MKYSYKKCIIDSILLMFIVQILRMILNYVLLSQFEFTLENFNIINLISFTLVGLSLILFL CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH KDNSLYNKVRNRKITEAFEENKNNILIEKCKLILFVVVLSLAIIVTYCTKGYVLFNVTMM CCCHHHHHHHCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH TLSVLIVPIFEELFFREYIWNYLSNFIKSKSKIICITSILSGIYNIGYIDVIRNYVILYN HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHCEEEEEC NSSYTFEVIISKIMIGTVFGIVLGLVKYRFRDVGFCILLRSLFAIFIR CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA