| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is 126698124
Identifier: 126698124
GI number: 126698124
Start: 650099
End: 650710
Strand: Direct
Name: 126698124
Synonym: CD0545
Alternate gene names: NA
Gene position: 650099-650710 (Clockwise)
Preceding gene: 126698123
Following gene: 126698125
Centisome position: 15.15
GC content: 28.27
Gene sequence:
>612_bases ATGAAAATGGTAAAAAAGTTAATATTATCTACGATTATGGCTCTAGTTTTAGTTCTAACTATAGGGTGTTCTAATGCAGA AGAAAAAGTAAAGTCGAATTTTGAAGCTAATTTAGCTGCATTAGAAATGTATAAGTATGATGAAAAAGGAATTTCTGATG CATTAACAGAAGCTGAATATAAACAGATTCAAACTTATAACAGCAAGGACAAGGTTTCAATGATTGCTCAATTGACACCT CTTTATGGTAAAGAAAATGCTGAAAAGATATACGAAACAATTGTTAAATTAATTCAAGGTGTTGAAAAGACAGTAACAGT GGAATCTTCTAGTAAGGATAAGATAACTTTGAAAGTTGTAAGTAAAGCTTTAGATACTAGTAAAGTAATGAGTGAAGCGA ACACTTTAGTAAAATCTTATGTAACTGATGAAAAGAATTACGATAAAAAAGAAAAAGAAGTTCAAGATGATATGACAAAA ATGATTATAGACCTTTACAATAAGAAACCAACTAAGGAAGTTACAACTATGATTACATATACTAAAAAAGATGGTAAATG GCAACCACCTAGTAATATACAAAAGTTATGTGAAGGAATATATACAATTTAA
Upstream 100 bases:
>100_bases AAGTGGTAAAATATTCAAAATAATTCTATAGTTAGACAAATTTATGTTATAATGTTGATAAATAAATTTTTTATTATTTT AATTGAGGGAGGATGTTTGT
Downstream 100 bases:
>100_bases TTTATTTTAAAGACACAAAACTATCTTTTAAGCATATAATAAAATGTTTGGAAGATAGTTTATTTTATTTTCAAAGTATA AATTATATTTTATAAATGAT
Product: lipoprotein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 203; Mature: 203
Protein sequence:
>203_residues MKMVKKLILSTIMALVLVLTIGCSNAEEKVKSNFEANLAALEMYKYDEKGISDALTEAEYKQIQTYNSKDKVSMIAQLTP LYGKENAEKIYETIVKLIQGVEKTVTVESSSKDKITLKVVSKALDTSKVMSEANTLVKSYVTDEKNYDKKEKEVQDDMTK MIIDLYNKKPTKEVTTMITYTKKDGKWQPPSNIQKLCEGIYTI
Sequences:
>Translated_203_residues MKMVKKLILSTIMALVLVLTIGCSNAEEKVKSNFEANLAALEMYKYDEKGISDALTEAEYKQIQTYNSKDKVSMIAQLTP LYGKENAEKIYETIVKLIQGVEKTVTVESSSKDKITLKVVSKALDTSKVMSEANTLVKSYVTDEKNYDKKEKEVQDDMTK MIIDLYNKKPTKEVTTMITYTKKDGKWQPPSNIQKLCEGIYTI >Mature_203_residues MKMVKKLILSTIMALVLVLTIGCSNAEEKVKSNFEANLAALEMYKYDEKGISDALTEAEYKQIQTYNSKDKVSMIAQLTP LYGKENAEKIYETIVKLIQGVEKTVTVESSSKDKITLKVVSKALDTSKVMSEANTLVKSYVTDEKNYDKKEKEVQDDMTK MIIDLYNKKPTKEVTTMITYTKKDGKWQPPSNIQKLCEGIYTI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23009; Mature: 23009
Theoretical pI: Translated: 8.86; Mature: 8.86
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 4.4 %Met (Translated Protein) 5.4 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 4.4 %Met (Mature Protein) 5.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKMVKKLILSTIMALVLVLTIGCSNAEEKVKSNFEANLAALEMYKYDEKGISDALTEAEY CHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCHHHHHHHHHHHHHHHCCHHHHHHHHHH KQIQTYNSKDKVSMIAQLTPLYGKENAEKIYETIVKLIQGVEKTVTVESSSKDKITLKVV HHHHHCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCHHHHEEEECCCCCHHHHHHH SKALDTSKVMSEANTLVKSYVTDEKNYDKKEKEVQDDMTKMIIDLYNKKPTKEVTTMITY HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHE TKKDGKWQPPSNIQKLCEGIYTI ECCCCCCCCCHHHHHHHHHHCCC >Mature Secondary Structure MKMVKKLILSTIMALVLVLTIGCSNAEEKVKSNFEANLAALEMYKYDEKGISDALTEAEY CHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCHHHHHHHHHHHHHHHCCHHHHHHHHHH KQIQTYNSKDKVSMIAQLTPLYGKENAEKIYETIVKLIQGVEKTVTVESSSKDKITLKVV HHHHHCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCHHHHEEEECCCCCHHHHHHH SKALDTSKVMSEANTLVKSYVTDEKNYDKKEKEVQDDMTKMIIDLYNKKPTKEVTTMITY HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHE TKKDGKWQPPSNIQKLCEGIYTI ECCCCCCCCCHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA