| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is 126698100
Identifier: 126698100
GI number: 126698100
Start: 619229
End: 620407
Strand: Direct
Name: 126698100
Synonym: CD0519
Alternate gene names: NA
Gene position: 619229-620407 (Clockwise)
Preceding gene: 126698099
Following gene: 126698101
Centisome position: 14.43
GC content: 35.2
Gene sequence:
>1179_bases ATGGAAAAGCTGTCGGATAAGAGAAGAGTCAAGGCAGTAAGTATGGAAACCTTCGTATTTATTGTACTATTGGCGGTAGG ATTTGGATATGTAGGAAGCATCATGGGTGCAGGAATGATGTTTAAAGTAATAATGAGTACAGCACATGCGCTTTTATTAG ACACAGTATTTTTAATAATGGCTATGGCAGTTCTTGCAGGTGCACTTAGTGCATTGCTTTCAGAGTTTGGAGTAATATCT TTAGTTAATAAGATATTTAAGGGTCTTATGAGACCTATATGGGGCTTACCTGGTGCTAGTATAGCAGGAGTAGTTGCAAC ATATTTATCTGATAATCCAGCTATTATACCATTTGCTAAAGACAAAACATTTACACAATATTTTAAGAAGTATCAAGTAC CTGCTTTATGTAATTTAGGAACAGCCTTTGGTATGGGACTTATTGTAACAACTTTTATGATAGCTCAAGGTAAAGAATAT GTACTACCAGCTATAATAGGTAATGTTGCGGCAATAATAGGTAGTATTATTAGTGTTAGAATTATGTTGACTTTTACTAA AAAGTATTATAATTATGACCCTAAAAATGATACTGAAAAGCAAATAAATGATAAAGGTGCAAAACTTGAAGAGTTTAGAG AAATAAGAGATGGTAATGTATTCCAAAGAACATTGGATGCTATACTTGAAGGTGGTAAGTTAGGTGTTGAAATGGGTATG GCTATAATACCAGGAGTTTTAGTAGTTTGTACATTAGTTATGTTATTAACTTTTGGACCATCTACAGACCCTGCTACAGG TCAAGCTGTTTACACAGGAGCTGCATATGAAGGTATAAAATTATTACCTGCTATTGGTGATAAGATTAGCTTCATAATAG AACCATTATTTGGATTCACATCACCAGAGGCAATAGCATTCCCTGTAACTGCATTAGGAGCTGTTGGAGCAGCAATATCT TTAGTACCAGAGTTTATAAAATCAGGCGCTATAACTCCTAATGATATAGCAGTATTCACAGCAATGGGTATGTGTTGGAG TGGATATTTAAGTACACACATAGGTATGATGGATGCTTTAGATGCAAGACCATTGGCTGGTAAAGCGATACTTTCGCATA CTATAGGTGGTTTATGTGCAGGTATATGTGCCCACTTTATATTTATGCTTGTTGGATAG
Upstream 100 bases:
>100_bases CTTGCATTACGAGTGTAAGTTTTAGAACTCAGTTTGTACCAAAAAATTTGTACCAATGTTAGGAACCTTAATTTAAAATT AAAAGGGGGAAGATTTCAAG
Downstream 100 bases:
>100_bases AAATGTTTTATAATTGAAGTATTATAATTTATGAAATTGAATAAAACTATTGATTTAAGTATGTAAAAACTAAATTAGTA ATTTAAATATATAGGTGCTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 392; Mature: 392
Protein sequence:
>392_residues MEKLSDKRRVKAVSMETFVFIVLLAVGFGYVGSIMGAGMMFKVIMSTAHALLLDTVFLIMAMAVLAGALSALLSEFGVIS LVNKIFKGLMRPIWGLPGASIAGVVATYLSDNPAIIPFAKDKTFTQYFKKYQVPALCNLGTAFGMGLIVTTFMIAQGKEY VLPAIIGNVAAIIGSIISVRIMLTFTKKYYNYDPKNDTEKQINDKGAKLEEFREIRDGNVFQRTLDAILEGGKLGVEMGM AIIPGVLVVCTLVMLLTFGPSTDPATGQAVYTGAAYEGIKLLPAIGDKISFIIEPLFGFTSPEAIAFPVTALGAVGAAIS LVPEFIKSGAITPNDIAVFTAMGMCWSGYLSTHIGMMDALDARPLAGKAILSHTIGGLCAGICAHFIFMLVG
Sequences:
>Translated_392_residues MEKLSDKRRVKAVSMETFVFIVLLAVGFGYVGSIMGAGMMFKVIMSTAHALLLDTVFLIMAMAVLAGALSALLSEFGVIS LVNKIFKGLMRPIWGLPGASIAGVVATYLSDNPAIIPFAKDKTFTQYFKKYQVPALCNLGTAFGMGLIVTTFMIAQGKEY VLPAIIGNVAAIIGSIISVRIMLTFTKKYYNYDPKNDTEKQINDKGAKLEEFREIRDGNVFQRTLDAILEGGKLGVEMGM AIIPGVLVVCTLVMLLTFGPSTDPATGQAVYTGAAYEGIKLLPAIGDKISFIIEPLFGFTSPEAIAFPVTALGAVGAAIS LVPEFIKSGAITPNDIAVFTAMGMCWSGYLSTHIGMMDALDARPLAGKAILSHTIGGLCAGICAHFIFMLVG >Mature_392_residues MEKLSDKRRVKAVSMETFVFIVLLAVGFGYVGSIMGAGMMFKVIMSTAHALLLDTVFLIMAMAVLAGALSALLSEFGVIS LVNKIFKGLMRPIWGLPGASIAGVVATYLSDNPAIIPFAKDKTFTQYFKKYQVPALCNLGTAFGMGLIVTTFMIAQGKEY VLPAIIGNVAAIIGSIISVRIMLTFTKKYYNYDPKNDTEKQINDKGAKLEEFREIRDGNVFQRTLDAILEGGKLGVEMGM AIIPGVLVVCTLVMLLTFGPSTDPATGQAVYTGAAYEGIKLLPAIGDKISFIIEPLFGFTSPEAIAFPVTALGAVGAAIS LVPEFIKSGAITPNDIAVFTAMGMCWSGYLSTHIGMMDALDARPLAGKAILSHTIGGLCAGICAHFIFMLVG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41689; Mature: 41689
Theoretical pI: Translated: 8.18; Mature: 8.18
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 5.1 %Met (Translated Protein) 6.4 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 5.1 %Met (Mature Protein) 6.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEKLSDKRRVKAVSMETFVFIVLLAVGFGYVGSIMGAGMMFKVIMSTAHALLLDTVFLIM CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AMAVLAGALSALLSEFGVISLVNKIFKGLMRPIWGLPGASIAGVVATYLSDNPAIIPFAK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEECC DKTFTQYFKKYQVPALCNLGTAFGMGLIVTTFMIAQGKEYVLPAIIGNVAAIIGSIISVR CCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH IMLTFTKKYYNYDPKNDTEKQINDKGAKLEEFREIRDGNVFQRTLDAILEGGKLGVEMGM HHHHHHHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHH AIIPGVLVVCTLVMLLTFGPSTDPATGQAVYTGAAYEGIKLLPAIGDKISFIIEPLFGFT HHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCHHCCHHHHHHHCHHHHHHHHHHHCCC SPEAIAFPVTALGAVGAAISLVPEFIKSGAITPNDIAVFTAMGMCWSGYLSTHIGMMDAL CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC DARPLAGKAILSHTIGGLCAGICAHFIFMLVG CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MEKLSDKRRVKAVSMETFVFIVLLAVGFGYVGSIMGAGMMFKVIMSTAHALLLDTVFLIM CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AMAVLAGALSALLSEFGVISLVNKIFKGLMRPIWGLPGASIAGVVATYLSDNPAIIPFAK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEECC DKTFTQYFKKYQVPALCNLGTAFGMGLIVTTFMIAQGKEYVLPAIIGNVAAIIGSIISVR CCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH IMLTFTKKYYNYDPKNDTEKQINDKGAKLEEFREIRDGNVFQRTLDAILEGGKLGVEMGM HHHHHHHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHH AIIPGVLVVCTLVMLLTFGPSTDPATGQAVYTGAAYEGIKLLPAIGDKISFIIEPLFGFT HHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCHHCCHHHHHHHCHHHHHHHHHHHCCC SPEAIAFPVTALGAVGAAISLVPEFIKSGAITPNDIAVFTAMGMCWSGYLSTHIGMMDAL CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC DARPLAGKAILSHTIGGLCAGICAHFIFMLVG CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA