| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is yccG [H]
Identifier: 126697910
GI number: 126697910
Start: 411452
End: 412387
Strand: Direct
Name: yccG [H]
Synonym: CD0338
Alternate gene names: 126697910
Gene position: 411452-412387 (Clockwise)
Preceding gene: 126697906
Following gene: 126697911
Centisome position: 9.59
GC content: 23.18
Gene sequence:
>936_bases ATGGCTAACAATTTTGTATTTCCTATAGTAATACTAACTTTGTTTATATTTAGCAATCTTATAATGAATAAGTATAAATT TTACAAAGAATTAGACATATTAAAAAAAGGCATATTAACATTTTTTATATCGTGTTTTGCATTGATTTTATTTATGGAGG GCACTAAATATATACAATTAAGGTTAGGATATAGTTTTTTACTTGAAGGAGTATTAAATATTATACTTTTTTTGGTTTTA ATTATTTTAAGTTTTTATACAGGCTTTAAAGTTATAAGATTGATAAATAATAATAATGAACAGGAATATAAACTACAAAA ACTAGATAGTAAAATAAATCATAAGGATAATATAATCATCAAATTAAGAAGTCAAAAACATGACTATTTGAAACATTTGC AAGTGGTGTATTCTCTATTAAATACTGGGCTAGATGAAGATGCCAAAGAATATATAATGAATATATCAAATAGTTTTAAA TCAAAAAATTCAAGGTATGGAAAAGTATCTTATTTAGATGCTATAGCTTCATTAAAATACGAGGAATGTCTTGAAAAGGA TATATCTTTTGATGTCTACATTCAAGATTTTATGGATAATTTAGAGATTGAACCTAATGATATGAGTTCAGTACTATTAA ACATAATAGATAATGCAATAGAGTCTTTGTCTACTATAAAAAAAGAAAAGAAGTATATAAGATTACATGCATATGAAGAT GAATTTCAGTATATTATAGCTATAAAAAATAATGGTCCTAAAATACATAATGTTGAAAGTATATTTTGGAATGGATTTAG TACTAAAGAAGGACAAGATAGGGGATATGGGCTACATTTAGTTAAAAATATATTAGATAAGTATGATTATAGTATACTTG TAAATAGTGATGATTTTTTAACTGAATTTGTAATCTTAATCCCAAAATATTATTAG
Upstream 100 bases:
>100_bases TTTTTACAAGTTTAATTAATCTATATGTAAATTTTAACTTTTTACATAATTTTTTTAAAATGATATAATCCCTATATAAA TTGTAGAGGGGAGGGAAATC
Downstream 100 bases:
>100_bases TTAGGAGGAGAAAAGTCTATGATAAAAGTTTTGATTTGTGATGATGATAAGATTGTAAGAGATGATATAGCAAATATAGC TAAAGAGTCTGGATATGTAG
Product: two-component sensor histidine kinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 311; Mature: 310
Protein sequence:
>311_residues MANNFVFPIVILTLFIFSNLIMNKYKFYKELDILKKGILTFFISCFALILFMEGTKYIQLRLGYSFLLEGVLNIILFLVL IILSFYTGFKVIRLINNNNEQEYKLQKLDSKINHKDNIIIKLRSQKHDYLKHLQVVYSLLNTGLDEDAKEYIMNISNSFK SKNSRYGKVSYLDAIASLKYEECLEKDISFDVYIQDFMDNLEIEPNDMSSVLLNIIDNAIESLSTIKKEKKYIRLHAYED EFQYIIAIKNNGPKIHNVESIFWNGFSTKEGQDRGYGLHLVKNILDKYDYSILVNSDDFLTEFVILIPKYY
Sequences:
>Translated_311_residues MANNFVFPIVILTLFIFSNLIMNKYKFYKELDILKKGILTFFISCFALILFMEGTKYIQLRLGYSFLLEGVLNIILFLVL IILSFYTGFKVIRLINNNNEQEYKLQKLDSKINHKDNIIIKLRSQKHDYLKHLQVVYSLLNTGLDEDAKEYIMNISNSFK SKNSRYGKVSYLDAIASLKYEECLEKDISFDVYIQDFMDNLEIEPNDMSSVLLNIIDNAIESLSTIKKEKKYIRLHAYED EFQYIIAIKNNGPKIHNVESIFWNGFSTKEGQDRGYGLHLVKNILDKYDYSILVNSDDFLTEFVILIPKYY >Mature_310_residues ANNFVFPIVILTLFIFSNLIMNKYKFYKELDILKKGILTFFISCFALILFMEGTKYIQLRLGYSFLLEGVLNIILFLVLI ILSFYTGFKVIRLINNNNEQEYKLQKLDSKINHKDNIIIKLRSQKHDYLKHLQVVYSLLNTGLDEDAKEYIMNISNSFKS KNSRYGKVSYLDAIASLKYEECLEKDISFDVYIQDFMDNLEIEPNDMSSVLLNIIDNAIESLSTIKKEKKYIRLHAYEDE FQYIIAIKNNGPKIHNVESIFWNGFSTKEGQDRGYGLHLVKNILDKYDYSILVNSDDFLTEFVILIPKYY
Specific function: Could be member of the two-component regulatory system yccG/yccH. Potentially phosphorylates yccH [H]
COG id: COG3290
COG function: function code T; Signal transduction histidine kinase regulating citrate/malate metabolism
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 histidine kinase domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 [H]
Pfam domain/function: PF02518 HATPase_c [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 36532; Mature: 36401
Theoretical pI: Translated: 6.80; Mature: 6.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MANNFVFPIVILTLFIFSNLIMNKYKFYKELDILKKGILTFFISCFALILFMEGTKYIQL CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE RLGYSFLLEGVLNIILFLVLIILSFYTGFKVIRLINNNNEQEYKLQKLDSKINHKDNIII ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHEECCCCHHHHHHHHHHHHCCCCCCEEE KLRSQKHDYLKHLQVVYSLLNTGLDEDAKEYIMNISNSFKSKNSRYGKVSYLDAIASLKY EEECCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCH EECLEKDISFDVYIQDFMDNLEIEPNDMSSVLLNIIDNAIESLSTIKKEKKYIRLHAYED HHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEC EFQYIIAIKNNGPKIHNVESIFWNGFSTKEGQDRGYGLHLVKNILDKYDYSILVNSDDFL CEEEEEEEECCCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCHHH TEFVILIPKYY HHHHHHCCCCC >Mature Secondary Structure ANNFVFPIVILTLFIFSNLIMNKYKFYKELDILKKGILTFFISCFALILFMEGTKYIQL CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE RLGYSFLLEGVLNIILFLVLIILSFYTGFKVIRLINNNNEQEYKLQKLDSKINHKDNIII ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHEECCCCHHHHHHHHHHHHCCCCCCEEE KLRSQKHDYLKHLQVVYSLLNTGLDEDAKEYIMNISNSFKSKNSRYGKVSYLDAIASLKY EEECCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCH EECLEKDISFDVYIQDFMDNLEIEPNDMSSVLLNIIDNAIESLSTIKKEKKYIRLHAYED HHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEC EFQYIIAIKNNGPKIHNVESIFWNGFSTKEGQDRGYGLHLVKNILDKYDYSILVNSDDFL CEEEEEEEECCCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCHHH TEFVILIPKYY HHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9106203; 9274031; 9384377 [H]