| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is 126697844
Identifier: 126697844
GI number: 126697844
Start: 331899
End: 333302
Strand: Direct
Name: 126697844
Synonym: CD0272
Alternate gene names: NA
Gene position: 331899-333302 (Clockwise)
Preceding gene: 126697843
Following gene: 126697845
Centisome position: 7.74
GC content: 23.43
Gene sequence:
>1404_bases GTGGTACTTATTTTAAACTTAAATGATATAAAAAAAGATATACTAAAACTCAATAAAAAAGACTCATGTTCTCTATATAA TGAATCTATTAATAATATAAATAATAATTGTATATCAACTGGATTAAAATTTTTAAAACAAGCAAGAGATTTAAACCCAG ATGATGTTGATATATTAAATCTCACAGGTCTTGTAAACTTACTAAAATGTAATTTTGATGATGCTGTAGAAAGTTTCTAT AAGAGTTCACTTTGTGAAAAAACTGCTCTGTGTGAAAAGTATATAAACATGCTTACATCTGAGGAGTTTTTAATTTTCTT TGAAAAGTACAATCAACTTATAAGGTTAATAAATAAAGGAATGTATAAAGAAGCTATACAAGGGTTTAAACTCATAACTG ACCAATACTGTGATTTAATAGAACCTTATGAGTTGCTTGCCTTACTGTATGACAAGGAAGAAGAATATATAAAATTTGAT GAATGTTTAGAAGTATTGAAGATTATTGATAAGGAAAATTATTTATTAAATCAAGAAAATAACACATTAGATATGTATAA TAGTGCTAATATACAAACTAAAAGTAATATAAAAGTAGATGATTATAAGAATGAGTTTTTACATAAAAGTAGTAGTAATC ATAAAATTAATGATTATAATGATGTAACTAAAGAAAAGAGTTCAAGCAAAAACCAGAAAAGTTCAGATTCTAATAAGAAA AAAAGTATTAAAAAAAATAAGTACCTATATATAGCCATAATATTAGGAATATTATTAGTAGGACAAAGTATATATAGTTC TTATAAGATGAATAATTTAACTGATAAAATATCTAAAAATAATGAAACTAAAAATGAAGAGTCAATAGATTCTAACTTGA CTAAGAAAGAAAATAATATAGAAGAAAATGAAGATATGAGTAAGGCTTCTAATATAAATAAGAGTAATAAAAACATTAAT AAAGAGGATGATGTAAAATCTAAAAAAAATACTGTAGAAAATGAAGATGATAAAGATTCTGACTTATTTACAGAGGATGA ATTGATGTCTAAGGCGAATACTTTAAAATCAGAAAAGAAAACTAAATCTTCTATACAACTATATAAGAAAGTTGCAGATA TAGGTGAAAATAAAGGGAATACATCTGAAGCAACTTATCAAGTTGCTATTCTCAGTGAAAAGTTAAAAGACTATAAAACT GCTGAAGAATATTATAAAATGTATGTAGAAAATTACTCAGAAAAAGATGCTTATTTTGATGAATCTTATTATAATTTAGG TATGATGTACTATAACAATGGTGATTTAAAAAATTCTAAATTGACATTAAAGAAGTTGGTTAATAAGGTACCAAATAGTA TGTATAATAATTCAAAAGTAAAAGAAATTTTAAAAGAAGAATAG
Upstream 100 bases:
>100_bases GATTTAAATTTTGGTGTAAAGATAACAAGTATAGTAAGTGAAGAAGACATGGTAAAATCTCTTGTTTAGAGATAACATCA ATTAATACTTAAGGCATGAG
Downstream 100 bases:
>100_bases TTAAATTAGATAAGAAAAATAAATTATTTTATTTTAAAATAATATGATTATAATATATTGACATACCATTTTAAAAAATT TAAAATATTAATTATAAAAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 467; Mature: 467
Protein sequence:
>467_residues MVLILNLNDIKKDILKLNKKDSCSLYNESINNINNNCISTGLKFLKQARDLNPDDVDILNLTGLVNLLKCNFDDAVESFY KSSLCEKTALCEKYINMLTSEEFLIFFEKYNQLIRLINKGMYKEAIQGFKLITDQYCDLIEPYELLALLYDKEEEYIKFD ECLEVLKIIDKENYLLNQENNTLDMYNSANIQTKSNIKVDDYKNEFLHKSSSNHKINDYNDVTKEKSSSKNQKSSDSNKK KSIKKNKYLYIAIILGILLVGQSIYSSYKMNNLTDKISKNNETKNEESIDSNLTKKENNIEENEDMSKASNINKSNKNIN KEDDVKSKKNTVENEDDKDSDLFTEDELMSKANTLKSEKKTKSSIQLYKKVADIGENKGNTSEATYQVAILSEKLKDYKT AEEYYKMYVENYSEKDAYFDESYYNLGMMYYNNGDLKNSKLTLKKLVNKVPNSMYNNSKVKEILKEE
Sequences:
>Translated_467_residues MVLILNLNDIKKDILKLNKKDSCSLYNESINNINNNCISTGLKFLKQARDLNPDDVDILNLTGLVNLLKCNFDDAVESFY KSSLCEKTALCEKYINMLTSEEFLIFFEKYNQLIRLINKGMYKEAIQGFKLITDQYCDLIEPYELLALLYDKEEEYIKFD ECLEVLKIIDKENYLLNQENNTLDMYNSANIQTKSNIKVDDYKNEFLHKSSSNHKINDYNDVTKEKSSSKNQKSSDSNKK KSIKKNKYLYIAIILGILLVGQSIYSSYKMNNLTDKISKNNETKNEESIDSNLTKKENNIEENEDMSKASNINKSNKNIN KEDDVKSKKNTVENEDDKDSDLFTEDELMSKANTLKSEKKTKSSIQLYKKVADIGENKGNTSEATYQVAILSEKLKDYKT AEEYYKMYVENYSEKDAYFDESYYNLGMMYYNNGDLKNSKLTLKKLVNKVPNSMYNNSKVKEILKEE >Mature_467_residues MVLILNLNDIKKDILKLNKKDSCSLYNESINNINNNCISTGLKFLKQARDLNPDDVDILNLTGLVNLLKCNFDDAVESFY KSSLCEKTALCEKYINMLTSEEFLIFFEKYNQLIRLINKGMYKEAIQGFKLITDQYCDLIEPYELLALLYDKEEEYIKFD ECLEVLKIIDKENYLLNQENNTLDMYNSANIQTKSNIKVDDYKNEFLHKSSSNHKINDYNDVTKEKSSSKNQKSSDSNKK KSIKKNKYLYIAIILGILLVGQSIYSSYKMNNLTDKISKNNETKNEESIDSNLTKKENNIEENEDMSKASNINKSNKNIN KEDDVKSKKNTVENEDDKDSDLFTEDELMSKANTLKSEKKTKSSIQLYKKVADIGENKGNTSEATYQVAILSEKLKDYKT AEEYYKMYVENYSEKDAYFDESYYNLGMMYYNNGDLKNSKLTLKKLVNKVPNSMYNNSKVKEILKEE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 54248; Mature: 54248
Theoretical pI: Translated: 5.18; Mature: 5.18
Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVLILNLNDIKKDILKLNKKDSCSLYNESINNINNNCISTGLKFLKQARDLNPDDVDILN CEEEEECHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCHHHH LTGLVNLLKCNFDDAVESFYKSSLCEKTALCEKYINMLTSEEFLIFFEKYNQLIRLINKG HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH MYKEAIQGFKLITDQYCDLIEPYELLALLYDKEEEYIKFDECLEVLKIIDKENYLLNQEN HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHCCHHHHHHHHHHHCCCCCEECCCC NTLDMYNSANIQTKSNIKVDDYKNEFLHKSSSNHKINDYNDVTKEKSSSKNQKSSDSNKK CCEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHH KSIKKNKYLYIAIILGILLVGQSIYSSYKMNNLTDKISKNNETKNEESIDSNLTKKENNI HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCC EENEDMSKASNINKSNKNINKEDDVKSKKNTVENEDDKDSDLFTEDELMSKANTLKSEKK CHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH TKSSIQLYKKVADIGENKGNTSEATYQVAILSEKLKDYKTAEEYYKMYVENYSEKDAYFD HHHHHHHHHHHHHHCCCCCCCCCHHEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHC ESYYNLGMMYYNNGDLKNSKLTLKKLVNKVPNSMYNNSKVKEILKEE CHHHEEEEEEEECCCCCCHHHHHHHHHHHCCHHHCCCHHHHHHHHCC >Mature Secondary Structure MVLILNLNDIKKDILKLNKKDSCSLYNESINNINNNCISTGLKFLKQARDLNPDDVDILN CEEEEECHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCHHHH LTGLVNLLKCNFDDAVESFYKSSLCEKTALCEKYINMLTSEEFLIFFEKYNQLIRLINKG HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH MYKEAIQGFKLITDQYCDLIEPYELLALLYDKEEEYIKFDECLEVLKIIDKENYLLNQEN HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHCCHHHHHHHHHHHCCCCCEECCCC NTLDMYNSANIQTKSNIKVDDYKNEFLHKSSSNHKINDYNDVTKEKSSSKNQKSSDSNKK CCEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHH KSIKKNKYLYIAIILGILLVGQSIYSSYKMNNLTDKISKNNETKNEESIDSNLTKKENNI HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCC EENEDMSKASNINKSNKNINKEDDVKSKKNTVENEDDKDSDLFTEDELMSKANTLKSEKK CHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH TKSSIQLYKKVADIGENKGNTSEATYQVAILSEKLKDYKTAEEYYKMYVENYSEKDAYFD HHHHHHHHHHHHHHCCCCCCCCCHHEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHC ESYYNLGMMYYNNGDLKNSKLTLKKLVNKVPNSMYNNSKVKEILKEE CHHHEEEEEEEECCCCCCHHHHHHHHHHHCCHHHCCCHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA