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The map label for this gene is lrtA [H]

Identifier: 126697714

GI number: 126697714

Start: 188593

End: 189144

Strand: Direct

Name: lrtA [H]

Synonym: CD0142

Alternate gene names: 126697714

Gene position: 188593-189144 (Clockwise)

Preceding gene: 126697713

Following gene: 126697715

Centisome position: 4.4

GC content: 28.08

Gene sequence:

>552_bases
ATGAACATAATTATATCTGGAAAACAAATCGAATTAACTGATGCAATAAAAAATAAAATCGAAACTAAACTAAGTAAGTT
AGATAATTACATTCATCCAGACACTGATGTAAAAGTTACAGTAAGTGCGAGAAAAGCAAGACAAAAAATAGAAGTAACAA
TAGCTACTGTAAATGGTCCTATAATTAGAGCAGAAGATATGCAGGAAAATTTATACACAGCTATAGATGTTGTATATGAT
AAATTAAGTAAACAATTAAAAAAATATAAAAAGAGATTACAAGATAAACATAAAGACAACAAGAGTATAAGATTCCAAGA
TGCAGAGATAAATCTAGCTGATGAACAAGAGGATTATGGGGATGAAAATCAAGAATTAGTAATTCAAAGACGTAAGAAAT
TTAGTGTTAAGCCAATGAGTGAAGAAGAAGCTGTATTACAGATGGAATTAATAGGACATGATTTTTATATGTTCAAGAAC
ATAGATTCAGATGAAATAGCAGTAGTTTATAAGCGTAATAATGGTGGATATGGTATAATAGAACATGAATAA

Upstream 100 bases:

>100_bases
TAAAAGTAAATAATAAAAAGAGGATTATGAGAGTTCGTGTAGAATATATTATTAAAGTATAAATTTTCTTATACTGGCAT
AATTGAAGGGAGATGTATTT

Downstream 100 bases:

>100_bases
AGCAATTTAGATTTAATCATATTAGCTATCGATAAATAAATTATCGATAGCTTTTTAAATTAATATTAAAAGTATAGTTT
TTATGGTAAAATGAATAATA

Product: RNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 183; Mature: 183

Protein sequence:

>183_residues
MNIIISGKQIELTDAIKNKIETKLSKLDNYIHPDTDVKVTVSARKARQKIEVTIATVNGPIIRAEDMQENLYTAIDVVYD
KLSKQLKKYKKRLQDKHKDNKSIRFQDAEINLADEQEDYGDENQELVIQRRKKFSVKPMSEEEAVLQMELIGHDFYMFKN
IDSDEIAVVYKRNNGGYGIIEHE

Sequences:

>Translated_183_residues
MNIIISGKQIELTDAIKNKIETKLSKLDNYIHPDTDVKVTVSARKARQKIEVTIATVNGPIIRAEDMQENLYTAIDVVYD
KLSKQLKKYKKRLQDKHKDNKSIRFQDAEINLADEQEDYGDENQELVIQRRKKFSVKPMSEEEAVLQMELIGHDFYMFKN
IDSDEIAVVYKRNNGGYGIIEHE
>Mature_183_residues
MNIIISGKQIELTDAIKNKIETKLSKLDNYIHPDTDVKVTVSARKARQKIEVTIATVNGPIIRAEDMQENLYTAIDVVYD
KLSKQLKKYKKRLQDKHKDNKSIRFQDAEINLADEQEDYGDENQELVIQRRKKFSVKPMSEEEAVLQMELIGHDFYMFKN
IDSDEIAVVYKRNNGGYGIIEHE

Specific function: Probably Modulates The Activity Of Sigma(54) (Rpon). [C]

COG id: COG1544

COG function: function code J; Ribosome-associated protein Y (PSrp-1)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S30Ae family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003489 [H]

Pfam domain/function: PF02482 Ribosomal_S30AE [H]

EC number: NA

Molecular weight: Translated: 21262; Mature: 21262

Theoretical pI: Translated: 6.15; Mature: 6.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIIISGKQIELTDAIKNKIETKLSKLDNYIHPDTDVKVTVSARKARQKIEVTIATVNGP
CEEEECCCEEEHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHCCEEEEEEEEECCCC
IIRAEDMQENLYTAIDVVYDKLSKQLKKYKKRLQDKHKDNKSIRFQDAEINLADEQEDYG
EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCEEEECCCCHHCC
DENQELVIQRRKKFSVKPMSEEEAVLQMELIGHDFYMFKNIDSDEIAVVYKRNNGGYGII
CCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCEEEEEECCCCCCEEEEEEECCCCEEEE
EHE
ECC
>Mature Secondary Structure
MNIIISGKQIELTDAIKNKIETKLSKLDNYIHPDTDVKVTVSARKARQKIEVTIATVNGP
CEEEECCCEEEHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHCCEEEEEEEEECCCC
IIRAEDMQENLYTAIDVVYDKLSKQLKKYKKRLQDKHKDNKSIRFQDAEINLADEQEDYG
EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCEEEECCCCHHCC
DENQELVIQRRKKFSVKPMSEEEAVLQMELIGHDFYMFKNIDSDEIAVVYKRNNGGYGII
CCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCEEEEEECCCCCCEEEEEEECCCCEEEE
EHE
ECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]