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The map label for this gene is yrrC [H]

Identifier: 126697704

GI number: 126697704

Start: 177257

End: 179476

Strand: Direct

Name: yrrC [H]

Synonym: CD0132

Alternate gene names: 126697704

Gene position: 177257-179476 (Clockwise)

Preceding gene: 126697703

Following gene: 126697705

Centisome position: 4.13

GC content: 28.02

Gene sequence:

>2220_bases
ATGGAAAAATTAGAAGGAATGATAAGTGAAATAGTCTTTAAAAACGAAGATAATGGTTATACAATAGCTCACCTGGTAAA
TGAAAATGATGAAATTGTGGTTGTAGGATGTATGCCTACTTTGGCAATTGGAGAAAGCATAGAAGTTGAAGGAAAGTGGG
TAAATCATAAGATTTATGGGACTCAATTTGAAGTGAATAGTTTTATGCCAGTAACACCATCATCCTTAGAAGGAATTTAT
GTTTACTTATCTTCTGGAATGATACATGGTATTGGTGAAAAAATGGCAAAAAGAATAATTGATAAGTTTGGTGTAGATAC
GTTAGAGGTGATACAAAATTCACCAGAAAAACTACAAGAAGTAGAAGGTATAGGGAGTAAAAAAGTAAAACAAATAGTAA
AAAGTTATGAAGAAGACAGAGAATTGAGAAATATAATAATACAGCTATCTCCTTTTGGAATAACACCAAATTACTGCCTA
AAAATATATAAAAAATATAAAAGCAGTGCAATAGAAGTTATAAATAAAAACCCATACCAACTTGCTGAAGATATAAGAGG
AATTGGATTTAAAGTAGCTGATAGTATAGCAAGTAAAATTGGTATAGATAAAAACTCTAAAGATAGAATTTGTCAGGGAA
TCTTATACACTTTAAATAAATCTTTAAGTAATGGGCATACATATTTACCAGAGCATGTTCTAATACAAGATTCGGAAAAA
TTATTGGAGCTAAATGGAGAAATAATAAAAGAGTGTGTAATGATGCTAGTTTATAATCAAAAAATACATATAGAGAAAGT
AAACAATGAAAATCTTATATACCTTATGCCATACTATTTAGCTGAAAATGGAGTATGTAGTCAAATAGTAAAATTATCAC
AGTATGAATTTGAAGACTTAAAAATAGATATAGATAACGAGATTAATGTTTTAGAAGAAGATAAGAAAATTAAGTTAGCA
GAAAAACAAATTTTAGCAGTCAAAGAATCTGTTAATAGTGGAGTATTAATTATAACTGGTGGACCAGGAACTGGTAAAAC
AACTACCATTAATGCTATCATAGATATATTTGAAAATAATGGTAAAAGTGTGACTTTGGCAGCTCCAACGGGAAGAGCAG
CAAAGAGAATGAGTGAAACTTCTAATAAAGAAGCAAAAACTATACATAGGTTGCTAGAAATGGGATTTTCAACAGATGAT
GATTTAACTTTTTTTAAGGATGAAGAAGACCCAATAAATTCAGATGTAATAATTGTTGATGAGGTATCAATGGTAGACAT
TATCTTAATGTACAATTTACTTAGAGCTATAAAGTTAGGAACAAGAGTAATTTTAGTTGGAGATAGTGACCAATTACCTT
CTGTAGGTGCTGGAAATGTACTTAAGGATATGATTAATTCTAATATTATAAATGTAGTTAAATTAAATGAAATATTTAGA
CAAGCGCAAGAAAGTATGATAATTGTAAATGCCCATAAGATAAACAATGGAGAACCACTTTATCTAAATACAAAAGGTAA
AGATTTCTTTTTTATAAGAAAATCAACTAATGAAGAAATTTTAAATGAAATAATAGGATTGGTTAATGAAAGATTACCTA
AATTTTATAAAGTTGATAAATTAAAAGATATACAAGTTTTATCTTCAATGAGAAAAGGTGAATTGGGAGTTACTAATCTC
AATATAGAGTTACAGAAGTATCTTAACAAAAAAGAAAAATTTAAAGTTGAAGAAAGTTTTTCTAAAAGATTATTTAGAGT
TGGCGATAAGGTAATGCAAGTAAAAAATAATTATACAAAAAAATGGGAAACAGAAGACCAAAAAGAAAGTGGAGAAGGTA
TCTATAATGGAGATATAGGATATGTTTATCACATAGATAAAGATAAGAAAACTATTTATATATTATTTGACCAGACTAAA
ATTGTATCATACCTATATGATGAATTAGATGAAATTGACCATAGTTTTTGTACAACAATACATAAAAGCCAGGGAAGTGA
ATTTCCAGTTGTAGTATTGCCAATAGCGTGGGCTCCTCCTATGTTACTTAGCCGTAATTTATTATATACAGCAGTAACAA
GAGCAAAAAAATTAGTTGTATTAGTTGGAGATGTGAAATATCTTGAATATATGATAAAAAATAATAGAGTTAATCAAAGG
TATTCAAATTTAGGATATAAGCTAAATAAATTTAAACAAGAAGGGTTGTTGATAGAATAA

Upstream 100 bases:

>100_bases
TATAAAAATATAAAACTTTTCTACGATTATCATAGTTTTAATATATAAAATTATACTAACATTTAAATGGAGCGATTATT
AGTATTTTTAGGAGATAAAA

Downstream 100 bases:

>100_bases
ATATGAAAATATGCAATGATAATTTTATTAAGAATTTTAAAAATATGATTAATAAATGTTTGGATTTTATATATCCTGAG
AATATAAGTTGCATAATTTG

Product: DNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 739; Mature: 739

Protein sequence:

>739_residues
MEKLEGMISEIVFKNEDNGYTIAHLVNENDEIVVVGCMPTLAIGESIEVEGKWVNHKIYGTQFEVNSFMPVTPSSLEGIY
VYLSSGMIHGIGEKMAKRIIDKFGVDTLEVIQNSPEKLQEVEGIGSKKVKQIVKSYEEDRELRNIIIQLSPFGITPNYCL
KIYKKYKSSAIEVINKNPYQLAEDIRGIGFKVADSIASKIGIDKNSKDRICQGILYTLNKSLSNGHTYLPEHVLIQDSEK
LLELNGEIIKECVMMLVYNQKIHIEKVNNENLIYLMPYYLAENGVCSQIVKLSQYEFEDLKIDIDNEINVLEEDKKIKLA
EKQILAVKESVNSGVLIITGGPGTGKTTTINAIIDIFENNGKSVTLAAPTGRAAKRMSETSNKEAKTIHRLLEMGFSTDD
DLTFFKDEEDPINSDVIIVDEVSMVDIILMYNLLRAIKLGTRVILVGDSDQLPSVGAGNVLKDMINSNIINVVKLNEIFR
QAQESMIIVNAHKINNGEPLYLNTKGKDFFFIRKSTNEEILNEIIGLVNERLPKFYKVDKLKDIQVLSSMRKGELGVTNL
NIELQKYLNKKEKFKVEESFSKRLFRVGDKVMQVKNNYTKKWETEDQKESGEGIYNGDIGYVYHIDKDKKTIYILFDQTK
IVSYLYDELDEIDHSFCTTIHKSQGSEFPVVVLPIAWAPPMLLSRNLLYTAVTRAKKLVVLVGDVKYLEYMIKNNRVNQR
YSNLGYKLNKFKQEGLLIE

Sequences:

>Translated_739_residues
MEKLEGMISEIVFKNEDNGYTIAHLVNENDEIVVVGCMPTLAIGESIEVEGKWVNHKIYGTQFEVNSFMPVTPSSLEGIY
VYLSSGMIHGIGEKMAKRIIDKFGVDTLEVIQNSPEKLQEVEGIGSKKVKQIVKSYEEDRELRNIIIQLSPFGITPNYCL
KIYKKYKSSAIEVINKNPYQLAEDIRGIGFKVADSIASKIGIDKNSKDRICQGILYTLNKSLSNGHTYLPEHVLIQDSEK
LLELNGEIIKECVMMLVYNQKIHIEKVNNENLIYLMPYYLAENGVCSQIVKLSQYEFEDLKIDIDNEINVLEEDKKIKLA
EKQILAVKESVNSGVLIITGGPGTGKTTTINAIIDIFENNGKSVTLAAPTGRAAKRMSETSNKEAKTIHRLLEMGFSTDD
DLTFFKDEEDPINSDVIIVDEVSMVDIILMYNLLRAIKLGTRVILVGDSDQLPSVGAGNVLKDMINSNIINVVKLNEIFR
QAQESMIIVNAHKINNGEPLYLNTKGKDFFFIRKSTNEEILNEIIGLVNERLPKFYKVDKLKDIQVLSSMRKGELGVTNL
NIELQKYLNKKEKFKVEESFSKRLFRVGDKVMQVKNNYTKKWETEDQKESGEGIYNGDIGYVYHIDKDKKTIYILFDQTK
IVSYLYDELDEIDHSFCTTIHKSQGSEFPVVVLPIAWAPPMLLSRNLLYTAVTRAKKLVVLVGDVKYLEYMIKNNRVNQR
YSNLGYKLNKFKQEGLLIE
>Mature_739_residues
MEKLEGMISEIVFKNEDNGYTIAHLVNENDEIVVVGCMPTLAIGESIEVEGKWVNHKIYGTQFEVNSFMPVTPSSLEGIY
VYLSSGMIHGIGEKMAKRIIDKFGVDTLEVIQNSPEKLQEVEGIGSKKVKQIVKSYEEDRELRNIIIQLSPFGITPNYCL
KIYKKYKSSAIEVINKNPYQLAEDIRGIGFKVADSIASKIGIDKNSKDRICQGILYTLNKSLSNGHTYLPEHVLIQDSEK
LLELNGEIIKECVMMLVYNQKIHIEKVNNENLIYLMPYYLAENGVCSQIVKLSQYEFEDLKIDIDNEINVLEEDKKIKLA
EKQILAVKESVNSGVLIITGGPGTGKTTTINAIIDIFENNGKSVTLAAPTGRAAKRMSETSNKEAKTIHRLLEMGFSTDD
DLTFFKDEEDPINSDVIIVDEVSMVDIILMYNLLRAIKLGTRVILVGDSDQLPSVGAGNVLKDMINSNIINVVKLNEIFR
QAQESMIIVNAHKINNGEPLYLNTKGKDFFFIRKSTNEEILNEIIGLVNERLPKFYKVDKLKDIQVLSSMRKGELGVTNL
NIELQKYLNKKEKFKVEESFSKRLFRVGDKVMQVKNNYTKKWETEDQKESGEGIYNGDIGYVYHIDKDKKTIYILFDQTK
IVSYLYDELDEIDHSFCTTIHKSQGSEFPVVVLPIAWAPPMLLSRNLLYTAVTRAKKLVVLVGDVKYLEYMIKNNRVNQR
YSNLGYKLNKFKQEGLLIE

Specific function: Exhibits Several Catalytic Activities, Including ATP-Dependent Exonuclease, ATP-Stimulated Endonuclease, ATP-Dependent Unwinding And DNA-Dependent ATPase Activities. Strand Cleavage Occurs 5' To 3' During The Unwinding Of Duplex DNA At Chi Sequences, Whi

COG id: COG0507

COG function: function code L; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789182, Length=441, Percent_Identity=27.437641723356, Blast_Score=134, Evalue=2e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR006345 [H]

Pfam domain/function: NA

EC number: 3.1.11.5

Molecular weight: Translated: 83958; Mature: 83958

Theoretical pI: Translated: 5.92; Mature: 5.92

Prosite motif: PS00430 TONB_DEPENDENT_REC_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKLEGMISEIVFKNEDNGYTIAHLVNENDEIVVVGCMPTLAIGESIEVEGKWVNHKIYG
CCHHHHHHHHHHEECCCCCEEEEEEECCCCCEEEEECCCHHHCCCCEEECCEEEEEEEEE
TQFEVNSFMPVTPSSLEGIYVYLSSGMIHGIGEKMAKRIIDKFGVDTLEVIQNSPEKLQE
EEEEECCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHHH
VEGIGSKKVKQIVKSYEEDRELRNIIIQLSPFGITPNYCLKIYKKYKSSAIEVINKNPYQ
HHCCCHHHHHHHHHHHHHHHHHHEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCHHH
LAEDIRGIGFKVADSIASKIGIDKNSKDRICQGILYTLNKSLSNGHTYLPEHVLIQDSEK
HHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCHH
LLELNGEIIKECVMMLVYNQKIHIEKVNNENLIYLMPYYLAENGVCSQIVKLSQYEFEDL
HHHCCHHHHHHHHHHHHHCCEEEEEEECCCCEEEEEHHHHCCCCHHHHHHHHHCCCCCEE
KIDIDNEINVLEEDKKIKLAEKQILAVKESVNSGVLIITGGPGTGKTTTINAIIDIFENN
EEEECCCCCEECCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCEEEHEEEEEEEECC
GKSVTLAAPTGRAAKRMSETSNKEAKTIHRLLEMGFSTDDDLTFFKDEEDPINSDVIIVD
CCEEEEECCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEE
EVSMVDIILMYNLLRAIKLGTRVILVGDSDQLPSVGAGNVLKDMINSNIINVVKLNEIFR
CHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHCCCCEEEEHHHHHHH
QAQESMIIVNAHKINNGEPLYLNTKGKDFFFIRKSTNEEILNEIIGLVNERLPKFYKVDK
HHHCCEEEEEEEECCCCCEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHCCHHEECCC
LKDIQVLSSMRKGELGVTNLNIELQKYLNKKEKFKVEESFSKRLFRVGDKVMQVKNNYTK
CHHHHHHHHHHCCCCCEEEECCHHHHHCCHHHHEEHHHHHHHHHHHHHHHHHHHHCCCCC
KWETEDQKESGEGIYNGDIGYVYHIDKDKKTIYILFDQTKIVSYLYDELDEIDHSFCTTI
CCCCCCHHHCCCCEEECCEEEEEEEECCCEEEEEEEECHHHHHHHHHHHHHHHHHHHHHH
HKSQGSEFPVVVLPIAWAPPMLLSRNLLYTAVTRAKKLVVLVGDVKYLEYMIKNNRVNQR
HHCCCCCCCEEEEECCCCCHHHHHCCHHHHHHHHCCEEEEEECCHHHHHHHHHCCCHHHH
YSNLGYKLNKFKQEGLLIE
HHHCCCHHHHHHCCCCCCC
>Mature Secondary Structure
MEKLEGMISEIVFKNEDNGYTIAHLVNENDEIVVVGCMPTLAIGESIEVEGKWVNHKIYG
CCHHHHHHHHHHEECCCCCEEEEEEECCCCCEEEEECCCHHHCCCCEEECCEEEEEEEEE
TQFEVNSFMPVTPSSLEGIYVYLSSGMIHGIGEKMAKRIIDKFGVDTLEVIQNSPEKLQE
EEEEECCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHHH
VEGIGSKKVKQIVKSYEEDRELRNIIIQLSPFGITPNYCLKIYKKYKSSAIEVINKNPYQ
HHCCCHHHHHHHHHHHHHHHHHHEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCHHH
LAEDIRGIGFKVADSIASKIGIDKNSKDRICQGILYTLNKSLSNGHTYLPEHVLIQDSEK
HHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCHH
LLELNGEIIKECVMMLVYNQKIHIEKVNNENLIYLMPYYLAENGVCSQIVKLSQYEFEDL
HHHCCHHHHHHHHHHHHHCCEEEEEEECCCCEEEEEHHHHCCCCHHHHHHHHHCCCCCEE
KIDIDNEINVLEEDKKIKLAEKQILAVKESVNSGVLIITGGPGTGKTTTINAIIDIFENN
EEEECCCCCEECCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCEEEHEEEEEEEECC
GKSVTLAAPTGRAAKRMSETSNKEAKTIHRLLEMGFSTDDDLTFFKDEEDPINSDVIIVD
CCEEEEECCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEE
EVSMVDIILMYNLLRAIKLGTRVILVGDSDQLPSVGAGNVLKDMINSNIINVVKLNEIFR
CHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHCCCCEEEEHHHHHHH
QAQESMIIVNAHKINNGEPLYLNTKGKDFFFIRKSTNEEILNEIIGLVNERLPKFYKVDK
HHHCCEEEEEEEECCCCCEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHCCHHEECCC
LKDIQVLSSMRKGELGVTNLNIELQKYLNKKEKFKVEESFSKRLFRVGDKVMQVKNNYTK
CHHHHHHHHHHCCCCCEEEECCHHHHHCCHHHHEEHHHHHHHHHHHHHHHHHHHHCCCCC
KWETEDQKESGEGIYNGDIGYVYHIDKDKKTIYILFDQTKIVSYLYDELDEIDHSFCTTI
CCCCCCHHHCCCCEEECCEEEEEEEECCCEEEEEEEECHHHHHHHHHHHHHHHHHHHHHH
HKSQGSEFPVVVLPIAWAPPMLLSRNLLYTAVTRAKKLVVLVGDVKYLEYMIKNNRVNQR
HHCCCCCCCEEEEECCCCCHHHHHCCHHHHHHHHCCEEEEEECCHHHHHHHHHCCCHHHH
YSNLGYKLNKFKQEGLLIE
HHHCCCHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: DNA-dependent ATPase activity; Phosphoric ester hydrolysis [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]