| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is gltX
Identifier: 126697617
GI number: 126697617
Start: 76997
End: 78478
Strand: Direct
Name: gltX
Synonym: CD0051
Alternate gene names: 126697617
Gene position: 76997-78478 (Clockwise)
Preceding gene: 126697616
Following gene: 126697618
Centisome position: 1.79
GC content: 30.36
Gene sequence:
>1482_bases ATGAATGTAAGAGTAAGGTTTGCACCAAGTCCAACAGGATTTGTACATATAGGTAGTTTGAGAACTGCTTTATATAACTA TTTATTTGCAAAAAAAATGGGCGGAGAATATATATTAAGAGTGGAAGATACAGACCAAAGTAGATTAGTAGAAGGTGCTA TAGAGAATATGCTTAATGCTATGAAATGGGCTGGGGTCAACCATAGTGAAGGTGTTATATTAGATGATAGTGGAAAAGTA GTACAAAAAGGAGAATATGGTCCATATATTCAATCTCAAAGATTAGATATATACCAAGAATATATAAAGCAACTTTTAGA TAGTGGAAAAGCTTATTACTGTTTCTGTACAAAAGAAAGACTGGATGAAGTAAGAGATGCTCAAAGAGCAGCAGGAGAAA CAGCTAAATATGATGGTCATTGTAAGAATCTTTCTAAAGAAGAAGTAGAAGCGAATATAAAAGCAGGAATACCATATGTT ATAAGATTAAGATTGCCAGAGAATCATACAATTAAGTTTACAGACTTAGTTAGAGGAGATATGGAATTTAATACTAATGA CTTAGATGACCAAGTATTAATGAAAACAGATGGATTTCCAACTTATCATTTTGCAGTAGTTGTTGATGACTATTTGATGA AAATTACACATGTTATAAGAGGAGAAGAATGGGTATCATCTACTCCAAAACATGTTTATTTATATGAAGCTTTTGGATGG GAAGCACCTGTATTTGTGCATTTACCAAATATACTTAATAAAGAAAAGAAAAAATTAAGTAAAAGACAAGGTGATGTAGC TGTTGAAGACTTTAAGAAAAAAGGATATTTACCAGAGGGATTAGTAAACTATGTAGCATTAGTTGGTTGGTCTCCTGAAG ATAATCAAGAATTGTTTACAATGGAGGAATTAGAAAAAGCCTTCTCTGTAGAAAGAGTCTCTAAAAGTGGTGGAGTATTT GATACTGAAAAATTAAATTGGGTTAATCAGCATTATATAAAAGATGGTGATGATGCTTATCTAACAGACTTAGCAATACC ATTTTTAATAGAAGATGGATTTATAACAGAAGAAGAAGCTACTAATAAATATGATTTCTTAAAGAGTATGATATCAGTAC TTAAAGAGAAATTACAATATGTAAAAGAAGTTACTGAACATGCAAGTATATTTTTTGGAGATAAAATAGAGGTAGAAACT GAAGAAGGAAGAGAGTTCTTAAGGTTAGAACATATACCTACTTTAATAGATGCTTTGAGAGAAAAAATAGAAAAAACAGA GGTATTAAATGCTGAGTTTGTTCAAGCTATGCTTAAAGAAATACAAAAAGAGTACAAAATAAAAGGGAAAAATTTATTTA TGGGCTCAAGAATAATTTTGACAGGGCAAATGCATGGTCCAGATTTACCAAAAGTAATGGAAGTTTTAGGAAAAGAAACT TGCTTAAATAGAATAGCTTATGTAAAAAATAATATATTATAG
Upstream 100 bases:
>100_bases AAGGATATTATTATTAGATTTGATTAAAAATAAACTTGCAAAACAATGTACTAGTTTAATATTATAGTTATATTGAATAA AATATCAGGAGGAAGTAAAA
Downstream 100 bases:
>100_bases TCATAAAAGTCCGCTAATTTAGAAGCGGACTTTTTTTGTGTTAGTATTTGGTGAAAATATCTGCTTAAGAAAATGAAGGT ATTTAAGGTAATAAATTTAA
Product: glutamyl-tRNA synthetase
Products: NA
Alternate protein names: Glutamate--tRNA ligase; GluRS
Number of amino acids: Translated: 493; Mature: 493
Protein sequence:
>493_residues MNVRVRFAPSPTGFVHIGSLRTALYNYLFAKKMGGEYILRVEDTDQSRLVEGAIENMLNAMKWAGVNHSEGVILDDSGKV VQKGEYGPYIQSQRLDIYQEYIKQLLDSGKAYYCFCTKERLDEVRDAQRAAGETAKYDGHCKNLSKEEVEANIKAGIPYV IRLRLPENHTIKFTDLVRGDMEFNTNDLDDQVLMKTDGFPTYHFAVVVDDYLMKITHVIRGEEWVSSTPKHVYLYEAFGW EAPVFVHLPNILNKEKKKLSKRQGDVAVEDFKKKGYLPEGLVNYVALVGWSPEDNQELFTMEELEKAFSVERVSKSGGVF DTEKLNWVNQHYIKDGDDAYLTDLAIPFLIEDGFITEEEATNKYDFLKSMISVLKEKLQYVKEVTEHASIFFGDKIEVET EEGREFLRLEHIPTLIDALREKIEKTEVLNAEFVQAMLKEIQKEYKIKGKNLFMGSRIILTGQMHGPDLPKVMEVLGKET CLNRIAYVKNNIL
Sequences:
>Translated_493_residues MNVRVRFAPSPTGFVHIGSLRTALYNYLFAKKMGGEYILRVEDTDQSRLVEGAIENMLNAMKWAGVNHSEGVILDDSGKV VQKGEYGPYIQSQRLDIYQEYIKQLLDSGKAYYCFCTKERLDEVRDAQRAAGETAKYDGHCKNLSKEEVEANIKAGIPYV IRLRLPENHTIKFTDLVRGDMEFNTNDLDDQVLMKTDGFPTYHFAVVVDDYLMKITHVIRGEEWVSSTPKHVYLYEAFGW EAPVFVHLPNILNKEKKKLSKRQGDVAVEDFKKKGYLPEGLVNYVALVGWSPEDNQELFTMEELEKAFSVERVSKSGGVF DTEKLNWVNQHYIKDGDDAYLTDLAIPFLIEDGFITEEEATNKYDFLKSMISVLKEKLQYVKEVTEHASIFFGDKIEVET EEGREFLRLEHIPTLIDALREKIEKTEVLNAEFVQAMLKEIQKEYKIKGKNLFMGSRIILTGQMHGPDLPKVMEVLGKET CLNRIAYVKNNIL >Mature_493_residues MNVRVRFAPSPTGFVHIGSLRTALYNYLFAKKMGGEYILRVEDTDQSRLVEGAIENMLNAMKWAGVNHSEGVILDDSGKV VQKGEYGPYIQSQRLDIYQEYIKQLLDSGKAYYCFCTKERLDEVRDAQRAAGETAKYDGHCKNLSKEEVEANIKAGIPYV IRLRLPENHTIKFTDLVRGDMEFNTNDLDDQVLMKTDGFPTYHFAVVVDDYLMKITHVIRGEEWVSSTPKHVYLYEAFGW EAPVFVHLPNILNKEKKKLSKRQGDVAVEDFKKKGYLPEGLVNYVALVGWSPEDNQELFTMEELEKAFSVERVSKSGGVF DTEKLNWVNQHYIKDGDDAYLTDLAIPFLIEDGFITEEEATNKYDFLKSMISVLKEKLQYVKEVTEHASIFFGDKIEVET EEGREFLRLEHIPTLIDALREKIEKTEVLNAEFVQAMLKEIQKEYKIKGKNLFMGSRIILTGQMHGPDLPKVMEVLGKET CLNRIAYVKNNIL
Specific function: Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction:glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
COG id: COG0008
COG function: function code J; Glutamyl- and glutaminyl-tRNA synthetases
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-I aminoacyl-tRNA synthetase family
Homologues:
Organism=Homo sapiens, GI134288884, Length=499, Percent_Identity=36.0721442885772, Blast_Score=310, Evalue=2e-84, Organism=Escherichia coli, GI1788743, Length=486, Percent_Identity=36.4197530864198, Blast_Score=334, Evalue=8e-93, Organism=Escherichia coli, GI226510925, Length=300, Percent_Identity=32.6666666666667, Blast_Score=157, Evalue=1e-39, Organism=Escherichia coli, GI1786895, Length=367, Percent_Identity=23.433242506812, Blast_Score=68, Evalue=1e-12, Organism=Caenorhabditis elegans, GI71993394, Length=488, Percent_Identity=35.2459016393443, Blast_Score=281, Evalue=4e-76, Organism=Saccharomyces cerevisiae, GI6324540, Length=497, Percent_Identity=38.2293762575453, Blast_Score=343, Evalue=4e-95, Organism=Saccharomyces cerevisiae, GI6321192, Length=316, Percent_Identity=25.3164556962025, Blast_Score=71, Evalue=4e-13, Organism=Drosophila melanogaster, GI24665321, Length=493, Percent_Identity=37.525354969574, Blast_Score=337, Evalue=1e-92,
Paralogues:
None
Copy number: 1,800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): SYE_CLOD6 (Q18CD6)
Other databases:
- EMBL: AM180355 - RefSeq: YP_001086514.1 - ProteinModelPortal: Q18CD6 - SMR: Q18CD6 - STRING: Q18CD6 - GeneID: 4916663 - GenomeReviews: AM180355_GR - KEGG: cdf:CD0051 - NMPDR: fig|1496.1.peg.98 - eggNOG: COG0008 - HOGENOM: HBG628189 - OMA: MANKIRV - ProtClustDB: PRK01406 - GO: GO:0005737 - HAMAP: MF_00022_B - InterPro: IPR008925 - InterPro: IPR020751 - InterPro: IPR004527 - InterPro: IPR000924 - InterPro: IPR020061 - InterPro: IPR020058 - InterPro: IPR014729 - Gene3D: G3DSA:1.10.1160.10 - Gene3D: G3DSA:3.40.50.620 - Gene3D: G3DSA:1.10.10.350 - PANTHER: PTHR10119 - PRINTS: PR00987 - TIGRFAMs: TIGR00464
Pfam domain/function: PF00749 tRNA-synt_1c; SSF48163 tRNA-synt_bind
EC number: =6.1.1.17
Molecular weight: Translated: 56612; Mature: 56612
Theoretical pI: Translated: 5.25; Mature: 5.25
Prosite motif: PS00178 AA_TRNA_LIGASE_I
Important sites: BINDING 261-261
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNVRVRFAPSPTGFVHIGSLRTALYNYLFAKKMGGEYILRVEDTDQSRLVEGAIENMLNA CCEEEEECCCCCCEEEEHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHH MKWAGVNHSEGVILDDSGKVVQKGEYGPYIQSQRLDIYQEYIKQLLDSGKAYYCFCTKER HHHCCCCCCCCEEECCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHH LDEVRDAQRAAGETAKYDGHCKNLSKEEVEANIKAGIPYVIRLRLPENHTIKFTDLVRGD HHHHHHHHHHCCCCCCCCCHHCCCCHHHHHHHHCCCCCEEEEEECCCCCCEEEHHHHCCC MEFNTNDLDDQVLMKTDGFPTYHFAVVVDDYLMKITHVIRGEEWVSSTPKHVYLYEAFGW CCCCCCCCCCCEEEECCCCCCEEEHHHHHHHHHHHHHHHCCCHHHCCCCCEEEEEEECCC EAPVFVHLPNILNKEKKKLSKRQGDVAVEDFKKKGYLPEGLVNYVALVGWSPEDNQELFT CCCEEEECCHHHCHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCEE MEELEKAFSVERVSKSGGVFDTEKLNWVNQHYIKDGDDAYLTDLAIPFLIEDGFITEEEA HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHEEECCCCCCHHC TNKYDFLKSMISVLKEKLQYVKEVTEHASIFFGDKIEVETEEGREFLRLEHIPTLIDALR CCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCEEEEEHHHCHHHHHHHHHHHHHHHHH EKIEKTEVLNAEFVQAMLKEIQKEYKIKGKNLFMGSRIILTGQMHGPDLPKVMEVLGKET HHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEECCEEEEEECCCCCCHHHHHHHHHHHH CLNRIAYVKNNIL HHHHHHHHHHCCC >Mature Secondary Structure MNVRVRFAPSPTGFVHIGSLRTALYNYLFAKKMGGEYILRVEDTDQSRLVEGAIENMLNA CCEEEEECCCCCCEEEEHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHH MKWAGVNHSEGVILDDSGKVVQKGEYGPYIQSQRLDIYQEYIKQLLDSGKAYYCFCTKER HHHCCCCCCCCEEECCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHH LDEVRDAQRAAGETAKYDGHCKNLSKEEVEANIKAGIPYVIRLRLPENHTIKFTDLVRGD HHHHHHHHHHCCCCCCCCCHHCCCCHHHHHHHHCCCCCEEEEEECCCCCCEEEHHHHCCC MEFNTNDLDDQVLMKTDGFPTYHFAVVVDDYLMKITHVIRGEEWVSSTPKHVYLYEAFGW CCCCCCCCCCCEEEECCCCCCEEEHHHHHHHHHHHHHHHCCCHHHCCCCCEEEEEEECCC EAPVFVHLPNILNKEKKKLSKRQGDVAVEDFKKKGYLPEGLVNYVALVGWSPEDNQELFT CCCEEEECCHHHCHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCEE MEELEKAFSVERVSKSGGVFDTEKLNWVNQHYIKDGDDAYLTDLAIPFLIEDGFITEEEA HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHEEECCCCCCHHC TNKYDFLKSMISVLKEKLQYVKEVTEHASIFFGDKIEVETEEGREFLRLEHIPTLIDALR CCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCEEEEEHHHCHHHHHHHHHHHHHHHHH EKIEKTEVLNAEFVQAMLKEIQKEYKIKGKNLFMGSRIILTGQMHGPDLPKVMEVLGKET HHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEECCEEEEEECCCCCCHHHHHHHHHHHH CLNRIAYVKNNIL HHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA