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The map label for this gene is recD

Identifier: 126697584

GI number: 126697584

Start: 22529

End: 23128

Strand: Direct

Name: recD

Synonym: CD0018

Alternate gene names: 126697584

Gene position: 22529-23128 (Clockwise)

Preceding gene: 126697583

Following gene: 126697586

Centisome position: 0.53

GC content: 35.17

Gene sequence:

>600_bases
ATGCAAGTTTATACAGGTCCCATAACGAGACTTATAGAGGAATTTTCAAAGCTTCCTGGAGTAGGAAGAAAAACTGCTCA
AAGATTGGCTTTTCATATTATTAATATGAATACTAATGATGTGGAAGCTTTATCTAAAGCGATTATAGATGCAAAAAGAG
AAATAAGATATTGCTCAATTTGTTGTAATATAACAGATACAGACCCATGTAGCATGTGTTCAAATAAAAGTAGAGATTCA
AGTGTTATATGTGTTGTGGAAGATCCAAGAGATGTAGCAGCTATGGAGAGAACGAGAGAGTTTAAAGGACAGTATCATGT
ATTAAATGGAGTAATTTCTCCAATGGATGGAATTGGACCAGATATGTTAAAAATAAAGGAACTTATCCAAAGACTTGGCA
ATCAGGAAGTCAAAGAAATAATAATGGCAACAAATCCTACTATTGAAGGTGAAGCTACAGCCATGTATATTGCTAGGTTA
GTAAAACCAATGGGAATCAAAGTCACTCGGATAGCTCATGGTCTTCCTGTTGGAGGCGATTTAGAGTATGCAGATGAGGT
CACAATATCAAAAGCACTAGAAGGCAGAAGAGAAATATAA

Upstream 100 bases:

>100_bases
AAATCAAGCATTGAGAAATATTGATGATATACAAGCAAGTCAAATGAGTAAGGTAACTGGAGGTATGAATATACCTGGGT
TATTCTAGTAGGTGGTATTT

Downstream 100 bases:

>100_bases
AAATCGAGGTTAATACCTCGATTTTTGTAGTTTTTTGAGTTAAATTCAAATTAATTTTGATTTAGATTTATTGAATAAAT
TTCTTCTGTATTGTATAATT

Product: recombination protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 199; Mature: 199

Protein sequence:

>199_residues
MQVYTGPITRLIEEFSKLPGVGRKTAQRLAFHIINMNTNDVEALSKAIIDAKREIRYCSICCNITDTDPCSMCSNKSRDS
SVICVVEDPRDVAAMERTREFKGQYHVLNGVISPMDGIGPDMLKIKELIQRLGNQEVKEIIMATNPTIEGEATAMYIARL
VKPMGIKVTRIAHGLPVGGDLEYADEVTISKALEGRREI

Sequences:

>Translated_199_residues
MQVYTGPITRLIEEFSKLPGVGRKTAQRLAFHIINMNTNDVEALSKAIIDAKREIRYCSICCNITDTDPCSMCSNKSRDS
SVICVVEDPRDVAAMERTREFKGQYHVLNGVISPMDGIGPDMLKIKELIQRLGNQEVKEIIMATNPTIEGEATAMYIARL
VKPMGIKVTRIAHGLPVGGDLEYADEVTISKALEGRREI
>Mature_199_residues
MQVYTGPITRLIEEFSKLPGVGRKTAQRLAFHIINMNTNDVEALSKAIIDAKREIRYCSICCNITDTDPCSMCSNKSRDS
SVICVVEDPRDVAAMERTREFKGQYHVLNGVISPMDGIGPDMLKIKELIQRLGNQEVKEIIMATNPTIEGEATAMYIARL
VKPMGIKVTRIAHGLPVGGDLEYADEVTISKALEGRREI

Specific function: May play a role in DNA repair. It seems to be involved in an recBC-independent recombinational process of DNA repair. It may act with recF and recO

COG id: COG0353

COG function: function code L; Recombinational DNA repair protein (RecF pathway)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Toprim domain

Homologues:

Organism=Escherichia coli, GI1786678, Length=193, Percent_Identity=46.6321243523316, Blast_Score=184, Evalue=3e-48,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RECR_CLOD6 (Q18CA2)

Other databases:

- EMBL:   AM180355
- RefSeq:   YP_001086481.1
- ProteinModelPortal:   Q18CA2
- SMR:   Q18CA2
- STRING:   Q18CA2
- GeneID:   4916107
- GenomeReviews:   AM180355_GR
- KEGG:   cdf:CD0018
- NMPDR:   fig|1496.1.peg.3657
- eggNOG:   COG0353
- HOGENOM:   HBG571744
- OMA:   HGAISPM
- ProtClustDB:   CLSK2534338
- HAMAP:   MF_00017
- InterPro:   IPR003583
- InterPro:   IPR000093
- InterPro:   IPR006171
- InterPro:   IPR015967
- SMART:   SM00278
- SMART:   SM00493
- TIGRFAMs:   TIGR00615

Pfam domain/function: PF02132 RecR; PF01751 Toprim; SSF111304 RecR

EC number: NA

Molecular weight: Translated: 22084; Mature: 22084

Theoretical pI: Translated: 6.76; Mature: 6.76

Prosite motif: PS01300 RECR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
7.5 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
7.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQVYTGPITRLIEEFSKLPGVGRKTAQRLAFHIINMNTNDVEALSKAIIDAKREIRYCSI
CCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHEEEEE
CCNITDTDPCSMCSNKSRDSSVICVVEDPRDVAAMERTREFKGQYHVLNGVISPMDGIGP
EECCCCCCHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCH
DMLKIKELIQRLGNQEVKEIIMATNPTIEGEATAMYIARLVKPMGIKVTRIAHGLPVGGD
HHHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEHHHCCCCCCCC
LEYADEVTISKALEGRREI
CCHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MQVYTGPITRLIEEFSKLPGVGRKTAQRLAFHIINMNTNDVEALSKAIIDAKREIRYCSI
CCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHEEEEE
CCNITDTDPCSMCSNKSRDSSVICVVEDPRDVAAMERTREFKGQYHVLNGVISPMDGIGP
EECCCCCCHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCH
DMLKIKELIQRLGNQEVKEIIMATNPTIEGEATAMYIARLVKPMGIKVTRIAHGLPVGGD
HHHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEHHHCCCCCCCC
LEYADEVTISKALEGRREI
CCHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA