Click here to switch to the map view.

The map label for this gene is rbcS [H]

Identifier: 126695915

GI number: 126695915

Start: 505109

End: 505450

Strand: Direct

Name: rbcS [H]

Synonym: P9301_05771

Alternate gene names: 126695915

Gene position: 505109-505450 (Clockwise)

Preceding gene: 126695914

Following gene: 126695916

Centisome position: 30.76

GC content: 40.94

Gene sequence:

>342_bases
ATGCCTTTCCAGAGCACAGTAAGCGACTATCAAACAGTTGCAACCCTGGAAACATTCGGTTTCTTACCACCGATGACCCA
GGAAGAAATATATGACCAAATTGCGTACATAATTGCTCAAGGTTGGAGTCCAGTTATTGAGCATGTTCATCCAAGTGGAT
GTATGCAAACTTATTGGTCTTATTGGAAACTCCCATTCTTTGGGGAAAAAGATCTTAACTTGATCGTGAGCGAATTAGAG
GCATGTCATAGAGCATACCCTGATCATCATGTAAGAATCATCGGATACGATGCTTACACTCAAAGTCAAGGAACAGCTTT
TGTAGTTTTCCAAGGACGTTAA

Upstream 100 bases:

>100_bases
TTCAGGGTTAATTCAAGTTTCGAAATTGAGGAGATTAATTCTCCTCAAAATTATTAAAATCTCGTTTTTACGAGTAATTT
CATTCACATTTTGATTAATT

Downstream 100 bases:

>100_bases
AGCTACTTATCGTAGTTAATATCTTTCTCCAAAAAAATTTTTGGAGAAAGTTTTTCAAAAAAGTTTTTAAAGAATTTCAA
ACTTGAAGATTATGTCAAAA

Product: ribulose bisphosphate carboxylase, small chain

Products: NA

Alternate protein names: RuBisCO small subunit [H]

Number of amino acids: Translated: 113; Mature: 112

Protein sequence:

>113_residues
MPFQSTVSDYQTVATLETFGFLPPMTQEEIYDQIAYIIAQGWSPVIEHVHPSGCMQTYWSYWKLPFFGEKDLNLIVSELE
ACHRAYPDHHVRIIGYDAYTQSQGTAFVVFQGR

Sequences:

>Translated_113_residues
MPFQSTVSDYQTVATLETFGFLPPMTQEEIYDQIAYIIAQGWSPVIEHVHPSGCMQTYWSYWKLPFFGEKDLNLIVSELE
ACHRAYPDHHVRIIGYDAYTQSQGTAFVVFQGR
>Mature_112_residues
PFQSTVSDYQTVATLETFGFLPPMTQEEIYDQIAYIIAQGWSPVIEHVHPSGCMQTYWSYWKLPFFGEKDLNLIVSELEA
CHRAYPDHHVRIIGYDAYTQSQGTAFVVFQGR

Specific function: RuBisCO catalyzes two reactions:the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the

COG id: COG4451

COG function: function code C; Ribulose bisphosphate carboxylase small subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RuBisCO small chain family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000894 [H]

Pfam domain/function: PF00101 RuBisCO_small [H]

EC number: =4.1.1.39 [H]

Molecular weight: Translated: 13042; Mature: 12911

Theoretical pI: Translated: 4.72; Mature: 4.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPFQSTVSDYQTVATLETFGFLPPMTQEEIYDQIAYIIAQGWSPVIEHVHPSGCMQTYWS
CCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHCCCCCHHHHHHHH
YWKLPFFGEKDLNLIVSELEACHRAYPDHHVRIIGYDAYTQSQGTAFVVFQGR
HHCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCEECCCCCEEEEEECC
>Mature Secondary Structure 
PFQSTVSDYQTVATLETFGFLPPMTQEEIYDQIAYIIAQGWSPVIEHVHPSGCMQTYWS
CCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHCCCCCHHHHHHHH
YWKLPFFGEKDLNLIVSELEACHRAYPDHHVRIIGYDAYTQSQGTAFVVFQGR
HHCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCEECCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9002609 [H]