Click here to switch to the map view.

The map label for this gene is rbcL

Identifier: 126695914

GI number: 126695914

Start: 503604

End: 505019

Strand: Direct

Name: rbcL

Synonym: P9301_05761

Alternate gene names: 126695914

Gene position: 503604-505019 (Clockwise)

Preceding gene: 126695913

Following gene: 126695915

Centisome position: 30.67

GC content: 40.61

Gene sequence:

>1416_bases
ATGAGTAAGAAGTATGACGCAGGGGTAAAGGAGTACAGAGATACCTACTGGACTCCAGAATATGTACCCCTAGACACCGA
TTTACTAGCCTGTTTCAAATGTACAGGTCAAGAAGGTGTCCCAAGAGAAGAAGTTGCAGCAGCTGTTGCCGCTGAATCTT
CAACAGGTACTTGGTCAACAGTTTGGTCCGAGTTACTTACAGACTTAGAATTTTATAAAGGACGTTGTTATCGAATCGAA
GACGTCCCTGGAGATCCTGAAGCTTTCTATGCTTTTATTGCATATCCTTTAGATCTTTTTGAAGAAGGCTCAATTACAAA
CGTATTAACATCTCTTGTAGGAAACGTTTTTGGATTTAAAGCTCTAAGGCATCTACGTCTAGAAGATATTAGATTCCCAA
TTGCTTTCATTAAAACTTGCGGTGGTCCACCAAACGGAATCGTAGTTGAAAGAGATCGACTTAACAAATACGGAAGACCT
CTACTTGGTTGTACCATCAAACCTAAATTAGGATTATCTGGTAAAAACTATGGTCGAGTTGTATATGAATGTCTTAGAGG
CGGTCTTGATTTAACGAAGGATGATGAGAATATCAATTCTCAACCATTCCAACGTTGGAGAGAAAGATTTGAGTTTGTTG
CAGAAGCAGTCAAGCTTGCTCAGCGAGAAACTGGAGAAGTTAAAGGTCACTACCTAAATTGTACTGCTAACACTCCTGAA
GAACTCTATGAAAGAGCTGAATTTGCAAAAGAGCTAGATATGCCAATCATCATGCATGATTATATAACTGGTGGTTTTAC
TGCAAATACTGGATTAGCTAATTGGTGTCGTAAAAATGGCATGCTTCTGCATATTCATAGAGCTATGCATGCTGTTATCG
ATAGACATCCAAAGCATGGTATTCACTTCAGAGTTCTTGCAAAATGTTTGAGACTATCTGGAGGAGACCAACTACATACT
GGAACCGTGGTTGGAAAACTAGAAGGTGATCGTCAAACAACTCTTGGTTATATTGACAACTTAAGAGAGTCATTTGTTCC
TGAAGATAGATCAAGAGGAAACTTCTTTGATCAAGATTGGGGTTCAATGCCTGGAGTATTTGCAGTTGCATCAGGTGGTA
TCCATGTTTGGCATATGCCTGCACTTCTTGCGATCTTTGGGGATGATTCTTGTCTTCAGTTCGGTGGAGGAACACATGGT
CATCCATGGGGTTCAGCTGCTGGAGCTGCAGCTAACAGAGTTGCTTTAGAAGCTTGTGTAAAAGCCCGTAATGCTGGTCG
CGAAATCGAAAAAGAGAGTAGAGACATTCTTATGGAAGCTGCTAAGCATAGTCCTGAATTAGCTATTGCTCTAGAAACTT
GGAAGGAAATTAAGTTCGAGTTTGACACTGTCGACAAGCTTGACGTTCAGGGTTAA

Upstream 100 bases:

>100_bases
TAATGGTGAATTTCTTGGTCAAAAGGACTAATTAAATAAAGCAAGATTTATAAATTTTGCAAAATAATTATTTTCCCTAC
ACAGACCTAAATTTATCCTT

Downstream 100 bases:

>100_bases
TTCAAGTTTCGAAATTGAGGAGATTAATTCTCCTCAAAATTATTAAAATCTCGTTTTTACGAGTAATTTCATTCACATTT
TGATTAATTATGCCTTTCCA

Product: ribulose bisophosphate carboxylase

Products: NA

Alternate protein names: RuBisCO large subunit

Number of amino acids: Translated: 471; Mature: 470

Protein sequence:

>471_residues
MSKKYDAGVKEYRDTYWTPEYVPLDTDLLACFKCTGQEGVPREEVAAAVAAESSTGTWSTVWSELLTDLEFYKGRCYRIE
DVPGDPEAFYAFIAYPLDLFEEGSITNVLTSLVGNVFGFKALRHLRLEDIRFPIAFIKTCGGPPNGIVVERDRLNKYGRP
LLGCTIKPKLGLSGKNYGRVVYECLRGGLDLTKDDENINSQPFQRWRERFEFVAEAVKLAQRETGEVKGHYLNCTANTPE
ELYERAEFAKELDMPIIMHDYITGGFTANTGLANWCRKNGMLLHIHRAMHAVIDRHPKHGIHFRVLAKCLRLSGGDQLHT
GTVVGKLEGDRQTTLGYIDNLRESFVPEDRSRGNFFDQDWGSMPGVFAVASGGIHVWHMPALLAIFGDDSCLQFGGGTHG
HPWGSAAGAAANRVALEACVKARNAGREIEKESRDILMEAAKHSPELAIALETWKEIKFEFDTVDKLDVQG

Sequences:

>Translated_471_residues
MSKKYDAGVKEYRDTYWTPEYVPLDTDLLACFKCTGQEGVPREEVAAAVAAESSTGTWSTVWSELLTDLEFYKGRCYRIE
DVPGDPEAFYAFIAYPLDLFEEGSITNVLTSLVGNVFGFKALRHLRLEDIRFPIAFIKTCGGPPNGIVVERDRLNKYGRP
LLGCTIKPKLGLSGKNYGRVVYECLRGGLDLTKDDENINSQPFQRWRERFEFVAEAVKLAQRETGEVKGHYLNCTANTPE
ELYERAEFAKELDMPIIMHDYITGGFTANTGLANWCRKNGMLLHIHRAMHAVIDRHPKHGIHFRVLAKCLRLSGGDQLHT
GTVVGKLEGDRQTTLGYIDNLRESFVPEDRSRGNFFDQDWGSMPGVFAVASGGIHVWHMPALLAIFGDDSCLQFGGGTHG
HPWGSAAGAAANRVALEACVKARNAGREIEKESRDILMEAAKHSPELAIALETWKEIKFEFDTVDKLDVQG
>Mature_470_residues
SKKYDAGVKEYRDTYWTPEYVPLDTDLLACFKCTGQEGVPREEVAAAVAAESSTGTWSTVWSELLTDLEFYKGRCYRIED
VPGDPEAFYAFIAYPLDLFEEGSITNVLTSLVGNVFGFKALRHLRLEDIRFPIAFIKTCGGPPNGIVVERDRLNKYGRPL
LGCTIKPKLGLSGKNYGRVVYECLRGGLDLTKDDENINSQPFQRWRERFEFVAEAVKLAQRETGEVKGHYLNCTANTPEE
LYERAEFAKELDMPIIMHDYITGGFTANTGLANWCRKNGMLLHIHRAMHAVIDRHPKHGIHFRVLAKCLRLSGGDQLHTG
TVVGKLEGDRQTTLGYIDNLRESFVPEDRSRGNFFDQDWGSMPGVFAVASGGIHVWHMPALLAIFGDDSCLQFGGGTHGH
PWGSAAGAAANRVALEACVKARNAGREIEKESRDILMEAAKHSPELAIALETWKEIKFEFDTVDKLDVQG

Specific function: RuBisCO catalyzes two reactions:the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultan

COG id: COG1850

COG function: function code G; Ribulose 1,5-bisphosphate carboxylase, large subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RuBisCO large chain family. Type I subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBL_PROM0 (A3PBS4)

Other databases:

- EMBL:   CP000576
- RefSeq:   YP_001090800.1
- ProteinModelPortal:   A3PBS4
- SMR:   A3PBS4
- STRING:   A3PBS4
- GeneID:   4911797
- GenomeReviews:   CP000576_GR
- KEGG:   pmg:P9301_05761
- eggNOG:   COG1850
- HOGENOM:   HBG405441
- OMA:   YTPDYTP
- ProtClustDB:   PRK04208
- BioCyc:   PMAR167546:P9301ORF_0590-MONOMER
- GO:   GO:0009536
- GO:   GO:0009853
- HAMAP:   MF_01338
- InterPro:   IPR020888
- InterPro:   IPR000685
- InterPro:   IPR017443
- InterPro:   IPR017444
- Gene3D:   G3DSA:3.20.20.110
- Gene3D:   G3DSA:3.30.70.150

Pfam domain/function: PF00016 RuBisCO_large; PF02788 RuBisCO_large_N; SSF51649 RuBisCO_large; SSF54966 RuBisCO_large

EC number: =4.1.1.39

Molecular weight: Translated: 52602; Mature: 52471

Theoretical pI: Translated: 6.13; Mature: 6.13

Prosite motif: PS00157 RUBISCO_LARGE

Important sites: ACT_SITE 167-167 ACT_SITE 286-286 BINDING 115-115 BINDING 165-165 BINDING 169-169 BINDING 287-287 BINDING 319-319 BINDING 371-371

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKKYDAGVKEYRDTYWTPEYVPLDTDLLACFKCTGQEGVPREEVAAAVAAESSTGTWST
CCCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHH
VWSELLTDLEFYKGRCYRIEDVPGDPEAFYAFIAYPLDLFEEGSITNVLTSLVGNVFGFK
HHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
ALRHLRLEDIRFPIAFIKTCGGPPNGIVVERDRLNKYGRPLLGCTIKPKLGLSGKNYGRV
HHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHCCCCEEEEEECCCCCCCCCCHHHH
VYECLRGGLDLTKDDENINSQPFQRWRERFEFVAEAVKLAQRETGEVKGHYLNCTANTPE
HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHH
ELYERAEFAKELDMPIIMHDYITGGFTANTGLANWCRKNGMLLHIHRAMHAVIDRHPKHG
HHHHHHHHHHHCCCCEEEHHHCCCCCCCCCCHHHHHHHCCEEEEHHHHHHHHHHCCCCCC
IHFRVLAKCLRLSGGDQLHTGTVVGKLEGDRQTTLGYIDNLRESFVPEDRSRGNFFDQDW
CHHHHHHHHHHCCCCCEEECCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
GSMPGVFAVASGGIHVWHMPALLAIFGDDSCLQFGGGTHGHPWGSAAGAAANRVALEACV
CCCCCEEEEECCCEEEEEHHHHHHHCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHH
KARNAGREIEKESRDILMEAAKHSPELAIALETWKEIKFEFDTVDKLDVQG
HHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHEEEECCCCCCCCCC
>Mature Secondary Structure 
SKKYDAGVKEYRDTYWTPEYVPLDTDLLACFKCTGQEGVPREEVAAAVAAESSTGTWST
CCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHH
VWSELLTDLEFYKGRCYRIEDVPGDPEAFYAFIAYPLDLFEEGSITNVLTSLVGNVFGFK
HHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
ALRHLRLEDIRFPIAFIKTCGGPPNGIVVERDRLNKYGRPLLGCTIKPKLGLSGKNYGRV
HHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHCCCCEEEEEECCCCCCCCCCHHHH
VYECLRGGLDLTKDDENINSQPFQRWRERFEFVAEAVKLAQRETGEVKGHYLNCTANTPE
HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHH
ELYERAEFAKELDMPIIMHDYITGGFTANTGLANWCRKNGMLLHIHRAMHAVIDRHPKHG
HHHHHHHHHHHCCCCEEEHHHCCCCCCCCCCHHHHHHHCCEEEEHHHHHHHHHHCCCCCC
IHFRVLAKCLRLSGGDQLHTGTVVGKLEGDRQTTLGYIDNLRESFVPEDRSRGNFFDQDW
CHHHHHHHHHHCCCCCEEECCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
GSMPGVFAVASGGIHVWHMPALLAIFGDDSCLQFGGGTHGHPWGSAAGAAANRVALEACV
CCCCCEEEEECCCEEEEEHHHHHHHCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHH
KARNAGREIEKESRDILMEAAKHSPELAIALETWKEIKFEFDTVDKLDVQG
HHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA